data_4I7Z
#
_model_server_result.job_id            xDIpsoQqFLeAYbFFLN6SVA 
_model_server_result.datetime_utc      '2024-11-26 02:17:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4i7z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":303}' 
#
_entry.id    4I7Z 
#
_exptl.entry_id    4I7Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              704.912 
_entity.id                          15 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-3-{[(R)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-2-[(6Z)-tridec-6-enoyloxy]propyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4I7Z 
_cell.length_a            159.451 
_cell.length_b            159.451 
_cell.length_c            362.746 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4I7Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.7255 138.088617 60.457667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 15 T N N 
? 15 W N N 
? 15 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 75 A GLU 75 1_555 Q CD CD . A CD 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc2 A NE2 HIS 86 A HIS 86 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc3 A NE2 HIS 100 A HIS 100 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc4 A NE2 HIS 187 A HIS 187 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc5 A NE2 HIS 202 A HIS 202 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc6 K FE HEM . A HEM 303 1_555 BA O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc7 Q CD CD . A CD 309 1_555 C NE2 HIS 143 C HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc8 Q CD CD . A CD 309 1_555 DA O HOH . C HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? 
metalc ? metalc9 B OD1 ASP 58 B ASP 58 1_555 S CD CD . B CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc10 R MG CLA . B CLA 201 1_555 CA O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc11 S CD CD . B CD 202 1_555 F OE2 GLU 4 F GLU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc12 C N TYR 1 C TYR 1 1_555 U FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc13 C NE2 HIS 26 C HIS 26 1_555 U FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
#
_chem_comp.formula           'C37 H69 O10 P' 
_chem_comp.formula_weight    704.912 
_chem_comp.id                OZ2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-3-{[(R)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-2-[(6Z)-tridec-6-enoyloxy]propyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OP1 P OZ2 doub 730 n n 
P OP3 OZ2 sing 731 n n 
P OP2 OZ2 sing 732 n n 
P O3G OZ2 sing 733 n n 
O1G C1 OZ2 sing 734 n n 
C2 C1 OZ2 sing 735 n n 
C1 O1 OZ2 doub 736 n n 
C3 C2 OZ2 sing 737 n n 
C2 H2 OZ2 sing 738 n n 
C2 H2A OZ2 sing 739 n n 
C3 C4 OZ2 sing 740 n n 
C3 H3 OZ2 sing 741 n n 
C3 H3A OZ2 sing 742 n n 
C5 C4 OZ2 sing 743 n n 
C4 H4 OZ2 sing 744 n n 
C4 H4A OZ2 sing 745 n n 
C5 C6 OZ2 sing 746 n n 
C5 H5 OZ2 sing 747 n n 
C5 H5A OZ2 sing 748 n n 
C7 C6 OZ2 sing 749 n n 
C6 H6 OZ2 sing 750 n n 
C6 H6A OZ2 sing 751 n n 
C7 C8 OZ2 sing 752 n n 
C7 H7 OZ2 sing 753 n n 
C7 H7A OZ2 sing 754 n n 
C9 C8 OZ2 sing 755 n n 
C8 H8 OZ2 sing 756 z n 
C8 H8A OZ2 sing 757 n n 
C9 C10 OZ2 doub 758 n n 
C9 H9 OZ2 sing 759 n n 
C10 C11 OZ2 sing 760 n n 
C10 H10 OZ2 sing 761 n n 
C11 C12 OZ2 sing 762 n n 
C11 H11 OZ2 sing 763 n n 
C11 H11A OZ2 sing 764 n n 
C13 C12 OZ2 sing 765 n n 
C12 H12 OZ2 sing 766 n n 
C12 H12A OZ2 sing 767 n n 
C13 C14 OZ2 sing 768 n n 
C13 H13 OZ2 sing 769 n n 
C13 H13A OZ2 sing 770 n n 
C15 C14 OZ2 sing 771 n n 
C14 H14 OZ2 sing 772 n n 
C14 H14A OZ2 sing 773 n n 
C15 C16 OZ2 sing 774 n n 
C15 H15 OZ2 sing 775 n n 
C15 H15A OZ2 sing 776 n n 
C16 C17 OZ2 sing 777 n n 
C16 H16 OZ2 sing 778 n n 
C16 H16A OZ2 sing 779 n n 
C17 C18 OZ2 sing 780 n n 
C17 H17 OZ2 sing 781 n n 
C17 H17A OZ2 sing 782 n n 
C18 H18 OZ2 sing 783 n n 
C18 H18A OZ2 sing 784 n n 
C18 H18B OZ2 sing 785 n n 
O2G C1B OZ2 sing 786 n n 
C1B O1B OZ2 doub 787 n n 
C1B C2B OZ2 sing 788 n n 
O1G C1G OZ2 sing 789 n n 
C1G C2G OZ2 sing 790 n n 
C1G H1G OZ2 sing 791 n n 
C1G H1GA OZ2 sing 792 n n 
C3B C2B OZ2 sing 793 n n 
C2B H2B OZ2 sing 794 n n 
C2B H2BA OZ2 sing 795 n n 
C2G C3G OZ2 sing 796 n n 
C2G O2G OZ2 sing 797 n n 
C2G H2G OZ2 sing 798 n n 
C3B C4B OZ2 sing 799 n n 
C3B H3B OZ2 sing 800 n n 
C3B H3BA OZ2 sing 801 n n 
O3G C3G OZ2 sing 802 n n 
C3G H3G OZ2 sing 803 n n 
C3G H3GA OZ2 sing 804 n n 
C5B C4B OZ2 sing 805 n n 
C4B H4B OZ2 sing 806 n n 
C4B H4BA OZ2 sing 807 n n 
C5B C6B OZ2 sing 808 n n 
C5B H5B OZ2 sing 809 n n 
C5B H5BA OZ2 sing 810 z n 
C6B C7B OZ2 doub 811 n n 
C6B H6B OZ2 sing 812 n n 
C8B C7B OZ2 sing 813 n n 
C7B H7B OZ2 sing 814 n n 
C8B C9B OZ2 sing 815 n n 
C8B H8B OZ2 sing 816 n n 
C8B H8BA OZ2 sing 817 n n 
C9B CB0 OZ2 sing 818 n n 
C9B H9B OZ2 sing 819 n n 
C9B H9BA OZ2 sing 820 n n 
CB0 CB1 OZ2 sing 821 n n 
CB0 HB0 OZ2 sing 822 n n 
CB0 HB0A OZ2 sing 823 n n 
CB1 CB2 OZ2 sing 824 n n 
CB1 HB1 OZ2 sing 825 n n 
CB1 HB1A OZ2 sing 826 n n 
CB2 CB3 OZ2 sing 827 n n 
CB2 HB2 OZ2 sing 828 n n 
CB2 HB2A OZ2 sing 829 n n 
CB3 HB3 OZ2 sing 830 n n 
CB3 HB3A OZ2 sing 831 n n 
CB3 HB3B OZ2 sing 832 n n 
CG2 CG1 OZ2 sing 833 n n 
CG1 OP3 OZ2 sing 834 n n 
CG1 HG1 OZ2 sing 835 n n 
CG1 HG1A OZ2 sing 836 n n 
CG3 CG2 OZ2 sing 837 n n 
OG2 CG2 OZ2 sing 838 n n 
CG2 HG2 OZ2 sing 839 n n 
OG2 HOG2 OZ2 sing 840 n n 
CG3 OG3 OZ2 sing 841 n n 
CG3 HG3 OZ2 sing 842 n n 
CG3 HG3A OZ2 sing 843 n n 
OG3 HOG3 OZ2 sing 844 n n 
OP2 HOP2 OZ2 sing 845 n n 
#
_atom_sites.entry_id                     4I7Z 
_atom_sites.fract_transf_matrix[1][1]    0.006272 
_atom_sites.fract_transf_matrix[1][2]    0.003621 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007242 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002757 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 9 HEM A 1 301 301 HEM HEM . 
J 9 HEM A 1 302 302 HEM HEM . 
K 9 HEM A 1 303 303 HEM HEM . 
L 10 MYS A 1 304 306 MYS MYS . 
M 11 8K6 A 1 305 308 8K6 8K6 . 
N 12 UMQ A 1 306 1102 UMQ UMQ . 
O 12 UMQ A 1 307 1103 UMQ UMQ . 
P 12 UMQ A 1 308 1104 UMQ UMQ . 
Q 13 CD A 1 309 1 CD CD . 
R 14 CLA B 1 201 201 CLA CLA . 
S 13 CD B 1 202 2 CD CD . 
T 15 OZ2 B 1 203 3 OZ2 OZ2 . 
U 9 HEM C 1 301 301 HEM HEM . 
V 13 CD C 1 302 3 CD CD . 
W 15 OZ2 C 1 303 1 OZ2 OZ2 . 
X 16 1E2 D 1 201 201 1E2 1E2 . 
Y 17 OCT F 1 101 102 OCT OCT . 
Z 18 BCR G 1 101 101 BCR BCR . 
AA 15 OZ2 G 1 102 2 OZ2 OZ2 . 
BA 19 HOH A 1 401 3 HOH HOH . 
BA 19 HOH A 2 402 4 HOH HOH . 
BA 19 HOH A 3 403 6 HOH HOH . 
BA 19 HOH A 4 404 8 HOH HOH . 
BA 19 HOH A 5 405 10 HOH HOH . 
BA 19 HOH A 6 406 11 HOH HOH . 
BA 19 HOH A 7 407 12 HOH HOH . 
BA 19 HOH A 8 408 13 HOH HOH . 
CA 19 HOH B 1 301 1 HOH HOH . 
CA 19 HOH B 2 302 2 HOH HOH . 
CA 19 HOH B 3 303 5 HOH HOH . 
CA 19 HOH B 4 304 9 HOH HOH . 
DA 19 HOH C 1 401 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P OZ2 . . . W 15 -68.175 81.3 16.996 1 186.26 ? P OZ2 303 C 1 
HETATM 2 C C1 OZ2 . . . W 15 -64.715 86.019 16.843 1 116.41 ? C1 OZ2 303 C 1 
HETATM 3 O O1 OZ2 . . . W 15 -64.443 85.292 17.791 1 116.34 ? O1 OZ2 303 C 1 
HETATM 4 C C2 OZ2 . . . W 15 -63.625 86.505 15.944 1 108.57 ? C2 OZ2 303 C 1 
HETATM 5 C C3 OZ2 . . . W 15 -62.287 86.8 16.533 1 100.47 ? C3 OZ2 303 C 1 
HETATM 6 C C4 OZ2 . . . W 15 -61.095 86.173 15.886 1 94.03 ? C4 OZ2 303 C 1 
HETATM 7 C C5 OZ2 . . . W 15 -59.753 86.766 16.164 1 88.59 ? C5 OZ2 303 C 1 
HETATM 8 C C6 OZ2 . . . W 15 -58.653 86.54 15.184 1 83.84 ? C6 OZ2 303 C 1 
HETATM 9 C C7 OZ2 . . . W 15 -57.473 87.453 15.249 1 82.41 ? C7 OZ2 303 C 1 
HETATM 10 C C8 OZ2 . . . W 15 -57.06 88.142 13.988 1 80.64 ? C8 OZ2 303 C 1 
HETATM 11 C C9 OZ2 . . . W 15 -56.043 89.233 14.07 1 76.36 ? C9 OZ2 303 C 1 
HETATM 12 C C10 OZ2 . . . W 15 -55.953 90.179 12.921 1 75.66 ? C10 OZ2 303 C 1 
HETATM 13 C C1B OZ2 . . . W 15 -65.046 83.396 14.021 1 115.75 ? C1B OZ2 303 C 1 
HETATM 14 O O1B OZ2 . . . W 15 -65.561 83.703 12.957 1 119.74 ? O1B OZ2 303 C 1 
HETATM 15 C C1G OZ2 . . . W 15 -66.892 85.083 16.446 1 125.6 ? C1G OZ2 303 C 1 
HETATM 16 O O1G OZ2 . . . W 15 -66.025 86.162 16.436 1 122.72 ? O1G OZ2 303 C 1 
HETATM 17 C C2B OZ2 . . . W 15 -63.565 83.263 14.114 1 104.45 ? C2B OZ2 303 C 1 
HETATM 18 C C2G OZ2 . . . W 15 -66.945 84.193 15.244 1 126.7 ? C2G OZ2 303 C 1 
HETATM 19 O O2G OZ2 . . . W 15 -65.784 83.453 15.179 1 122.35 ? O2G OZ2 303 C 1 
HETATM 20 C C3B OZ2 . . . W 15 -62.872 82.463 13.068 1 94.23 ? C3B OZ2 303 C 1 
HETATM 21 C C3G OZ2 . . . W 15 -68.106 83.259 15.352 1 129.56 ? C3G OZ2 303 C 1 
HETATM 22 O O3G OZ2 . . . W 15 -68.437 82.79 16.607 1 130.79 ? O3G OZ2 303 C 1 
HETATM 23 C C4B OZ2 . . . W 15 -61.436 82.135 13.305 1 85.1 ? C4B OZ2 303 C 1 
HETATM 24 C C5B OZ2 . . . W 15 -60.394 82.874 12.534 1 78.31 ? C5B OZ2 303 C 1 
HETATM 25 C C6B OZ2 . . . W 15 -59.013 82.898 13.103 1 72.83 ? C6B OZ2 303 C 1 
HETATM 26 C C7B OZ2 . . . W 15 -57.871 83.289 12.225 1 68.54 ? C7B OZ2 303 C 1 
HETATM 27 C C8B OZ2 . . . W 15 -56.488 82.99 12.704 1 65.1 ? C8B OZ2 303 C 1 
HETATM 28 C C9B OZ2 . . . W 15 -55.826 83.952 13.639 1 62.97 ? C9B OZ2 303 C 1 
HETATM 29 C CB0 OZ2 . . . W 15 -54.374 83.764 13.961 1 59.19 ? CB0 OZ2 303 C 1 
HETATM 30 C CB1 OZ2 . . . W 15 -54.005 83.069 15.236 1 54.5 ? CB1 OZ2 303 C 1 
HETATM 31 C CG1 OZ2 . . . W 15 -66.184 80.007 17.98 1 143.49 ? CG1 OZ2 303 C 1 
HETATM 32 C CG2 OZ2 . . . W 15 -65.255 79.497 16.926 1 141.02 ? CG2 OZ2 303 C 1 
HETATM 33 O OG2 OZ2 . . . W 15 -63.949 79.8 17.248 1 137.71 ? OG2 OZ2 303 C 1 
HETATM 34 C CG3 OZ2 . . . W 15 -65.414 78.021 16.758 1 140.8 ? CG3 OZ2 303 C 1 
HETATM 35 O OG3 OZ2 . . . W 15 -65.515 77.229 17.884 1 140.39 ? OG3 OZ2 303 C 1 
HETATM 36 O OP1 OZ2 . . . W 15 -69.278 80.823 17.912 1 186.47 ? OP1 OZ2 303 C 1 
HETATM 37 O OP2 OZ2 . . . W 15 -68.155 80.439 15.755 1 185.57 ? OP2 OZ2 303 C 1 
HETATM 38 O OP3 OZ2 . . . W 15 -66.798 81.219 17.731 1 145.98 ? OP3 OZ2 303 C 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           38 
#