data_4I7Z # _model_server_result.job_id L9PTGvvgFSEHFyJgRhRjkg _model_server_result.datetime_utc '2024-11-22 16:51:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i7z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":304}' # _entry.id 4I7Z # _exptl.entry_id 4I7Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 212.415 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PENTADECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4I7Z _cell.length_a 159.451 _cell.length_b 159.451 _cell.length_c 362.746 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I7Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -79.7255 138.088617 60.457667 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 75 A GLU 75 1_555 Q CD CD . A CD 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc2 A NE2 HIS 86 A HIS 86 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc3 A NE2 HIS 100 A HIS 100 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc4 A NE2 HIS 187 A HIS 187 1_555 I FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc5 A NE2 HIS 202 A HIS 202 1_555 J FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc6 K FE HEM . A HEM 303 1_555 BA O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc7 Q CD CD . A CD 309 1_555 C NE2 HIS 143 C HIS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc8 Q CD CD . A CD 309 1_555 DA O HOH . C HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc9 B OD1 ASP 58 B ASP 58 1_555 S CD CD . B CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc10 R MG CLA . B CLA 201 1_555 CA O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc11 S CD CD . B CD 202 1_555 F OE2 GLU 4 F GLU 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc12 C N TYR 1 C TYR 1 1_555 U FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc13 C NE2 HIS 26 C HIS 26 1_555 U FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? # _chem_comp.formula 'C15 H32' _chem_comp.formula_weight 212.415 _chem_comp.id MYS _chem_comp.mon_nstd_flag . _chem_comp.name PENTADECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MYS sing 659 n n C1 H11 MYS sing 660 n n C1 H12 MYS sing 661 n n C1 H13 MYS sing 662 n n C2 C3 MYS sing 663 n n C2 H21 MYS sing 664 n n C2 H22 MYS sing 665 n n C3 C4 MYS sing 666 n n C3 H31 MYS sing 667 n n C3 H32 MYS sing 668 n n C4 C5 MYS sing 669 n n C4 H41 MYS sing 670 n n C4 H42 MYS sing 671 n n C5 C6 MYS sing 672 n n C5 H51 MYS sing 673 n n C5 H52 MYS sing 674 n n C6 C7 MYS sing 675 n n C6 H61 MYS sing 676 n n C6 H62 MYS sing 677 n n C7 C8 MYS sing 678 n n C7 H71 MYS sing 679 n n C7 H72 MYS sing 680 n n C8 C9 MYS sing 681 n n C8 H81 MYS sing 682 n n C8 H82 MYS sing 683 n n C9 C10 MYS sing 684 n n C9 H91 MYS sing 685 n n C9 H92 MYS sing 686 n n C10 C11 MYS sing 687 n n C10 H101 MYS sing 688 n n C10 H102 MYS sing 689 n n C11 C12 MYS sing 690 n n C11 H111 MYS sing 691 n n C11 H112 MYS sing 692 n n C12 C13 MYS sing 693 n n C12 H121 MYS sing 694 n n C12 H122 MYS sing 695 n n C13 C14 MYS sing 696 n n C13 H131 MYS sing 697 n n C13 H132 MYS sing 698 n n C14 C15 MYS sing 699 n n C14 H141 MYS sing 700 n n C14 H142 MYS sing 701 n n C15 H151 MYS sing 702 n n C15 H152 MYS sing 703 n n C15 H153 MYS sing 704 n n # _atom_sites.entry_id 4I7Z _atom_sites.fract_transf_matrix[1][1] 0.006272 _atom_sites.fract_transf_matrix[1][2] 0.003621 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007242 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 9 HEM A 1 301 301 HEM HEM . J 9 HEM A 1 302 302 HEM HEM . K 9 HEM A 1 303 303 HEM HEM . L 10 MYS A 1 304 306 MYS MYS . M 11 8K6 A 1 305 308 8K6 8K6 . N 12 UMQ A 1 306 1102 UMQ UMQ . O 12 UMQ A 1 307 1103 UMQ UMQ . P 12 UMQ A 1 308 1104 UMQ UMQ . Q 13 CD A 1 309 1 CD CD . R 14 CLA B 1 201 201 CLA CLA . S 13 CD B 1 202 2 CD CD . T 15 OZ2 B 1 203 3 OZ2 OZ2 . U 9 HEM C 1 301 301 HEM HEM . V 13 CD C 1 302 3 CD CD . W 15 OZ2 C 1 303 1 OZ2 OZ2 . X 16 1E2 D 1 201 201 1E2 1E2 . Y 17 OCT F 1 101 102 OCT OCT . Z 18 BCR G 1 101 101 BCR BCR . AA 15 OZ2 G 1 102 2 OZ2 OZ2 . BA 19 HOH A 1 401 3 HOH HOH . BA 19 HOH A 2 402 4 HOH HOH . BA 19 HOH A 3 403 6 HOH HOH . BA 19 HOH A 4 404 8 HOH HOH . BA 19 HOH A 5 405 10 HOH HOH . BA 19 HOH A 6 406 11 HOH HOH . BA 19 HOH A 7 407 12 HOH HOH . BA 19 HOH A 8 408 13 HOH HOH . CA 19 HOH B 1 301 1 HOH HOH . CA 19 HOH B 2 302 2 HOH HOH . CA 19 HOH B 3 303 5 HOH HOH . CA 19 HOH B 4 304 9 HOH HOH . DA 19 HOH C 1 401 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYS . . . L 10 -35.706 56.852 20.929 1 80.29 ? C1 MYS 304 A 1 HETATM 2 C C2 MYS . . . L 10 -37.175 56.982 21.133 1 78.79 ? C2 MYS 304 A 1 HETATM 3 C C3 MYS . . . L 10 -37.608 56.142 22.286 1 78.8 ? C3 MYS 304 A 1 HETATM 4 C C4 MYS . . . L 10 -39.033 56.447 22.604 1 77.6 ? C4 MYS 304 A 1 HETATM 5 C C5 MYS . . . L 10 -39.569 55.443 23.566 1 77.72 ? C5 MYS 304 A 1 HETATM 6 C C6 MYS . . . L 10 -40.893 55.907 24.075 1 78.34 ? C6 MYS 304 A 1 HETATM 7 C C7 MYS . . . L 10 -41.713 54.778 24.612 1 80.86 ? C7 MYS 304 A 1 HETATM 8 C C8 MYS . . . L 10 -42.851 54.467 23.693 1 82.32 ? C8 MYS 304 A 1 HETATM 9 C C9 MYS . . . L 10 -42.345 53.9 22.413 1 85.62 ? C9 MYS 304 A 1 HETATM 10 C C10 MYS . . . L 10 -42.373 54.898 21.302 1 83.36 ? C10 MYS 304 A 1 HETATM 11 C C11 MYS . . . L 10 -42.035 54.169 20.045 1 85.13 ? C11 MYS 304 A 1 HETATM 12 C C12 MYS . . . L 10 -41.841 55.117 18.917 1 82.01 ? C12 MYS 304 A 1 HETATM 13 C C13 MYS . . . L 10 -41.453 54.361 17.692 1 81.27 ? C13 MYS 304 A 1 HETATM 14 C C14 MYS . . . L 10 -41.062 55.341 16.637 1 81.9 ? C14 MYS 304 A 1 HETATM 15 C C15 MYS . . . L 10 -40.51 54.635 15.446 1 81.83 ? C15 MYS 304 A 1 HETATM 16 H H11 MYS . . . L 10 -35.242 57.142 21.73 1 96.35 ? H11 MYS 304 A 1 HETATM 17 H H12 MYS . . . L 10 -35.433 57.404 20.18 1 96.35 ? H12 MYS 304 A 1 HETATM 18 H H13 MYS . . . L 10 -35.485 55.926 20.745 1 96.35 ? H13 MYS 304 A 1 HETATM 19 H H21 MYS . . . L 10 -37.391 57.91 21.314 1 94.55 ? H21 MYS 304 A 1 HETATM 20 H H22 MYS . . . L 10 -37.64 56.694 20.331 1 94.55 ? H22 MYS 304 A 1 HETATM 21 H H31 MYS . . . L 10 -37.52 55.204 22.053 1 94.56 ? H31 MYS 304 A 1 HETATM 22 H H32 MYS . . . L 10 -37.054 56.337 23.059 1 94.56 ? H32 MYS 304 A 1 HETATM 23 H H41 MYS . . . L 10 -39.558 56.421 21.789 1 93.12 ? H41 MYS 304 A 1 HETATM 24 H H42 MYS . . . L 10 -39.09 57.332 22.996 1 93.12 ? H42 MYS 304 A 1 HETATM 25 H H51 MYS . . . L 10 -38.955 55.34 24.31 1 93.27 ? H51 MYS 304 A 1 HETATM 26 H H52 MYS . . . L 10 -39.676 54.592 23.113 1 93.27 ? H52 MYS 304 A 1 HETATM 27 H H61 MYS . . . L 10 -41.383 56.335 23.355 1 94.01 ? H61 MYS 304 A 1 HETATM 28 H H62 MYS . . . L 10 -40.746 56.555 24.782 1 94.01 ? H62 MYS 304 A 1 HETATM 29 H H71 MYS . . . L 10 -41.155 53.992 24.72 1 97.03 ? H71 MYS 304 A 1 HETATM 30 H H72 MYS . . . L 10 -42.071 55.041 25.475 1 97.03 ? H72 MYS 304 A 1 HETATM 31 H H81 MYS . . . L 10 -43.458 53.837 24.112 1 98.78 ? H81 MYS 304 A 1 HETATM 32 H H82 MYS . . . L 10 -43.326 55.292 23.505 1 98.78 ? H82 MYS 304 A 1 HETATM 33 H H91 MYS . . . L 10 -42.904 53.146 22.166 1 102.75 ? H91 MYS 304 A 1 HETATM 34 H H92 MYS . . . L 10 -41.435 53.588 22.541 1 102.75 ? H92 MYS 304 A 1 HETATM 35 H H101 MYS . . . L 10 -41.718 55.594 21.468 1 100.03 ? H101 MYS 304 A 1 HETATM 36 H H102 MYS . . . L 10 -43.258 55.288 21.229 1 100.03 ? H102 MYS 304 A 1 HETATM 37 H H111 MYS . . . L 10 -41.218 53.662 20.174 1 102.16 ? H111 MYS 304 A 1 HETATM 38 H H112 MYS . . . L 10 -42.751 53.553 19.824 1 102.16 ? H112 MYS 304 A 1 HETATM 39 H H121 MYS . . . L 10 -42.665 55.601 18.749 1 98.41 ? H121 MYS 304 A 1 HETATM 40 H H122 MYS . . . L 10 -41.142 55.753 19.137 1 98.41 ? H122 MYS 304 A 1 HETATM 41 H H131 MYS . . . L 10 -42.2 53.827 17.381 1 97.52 ? H131 MYS 304 A 1 HETATM 42 H H132 MYS . . . L 10 -40.703 53.778 17.886 1 97.52 ? H132 MYS 304 A 1 HETATM 43 H H141 MYS . . . L 10 -41.84 55.856 16.374 1 98.27 ? H141 MYS 304 A 1 HETATM 44 H H142 MYS . . . L 10 -40.387 55.94 16.993 1 98.27 ? H142 MYS 304 A 1 HETATM 45 H H151 MYS . . . L 10 -40.262 55.285 14.771 1 98.19 ? H151 MYS 304 A 1 HETATM 46 H H152 MYS . . . L 10 -41.181 54.034 15.086 1 98.19 ? H152 MYS 304 A 1 HETATM 47 H H153 MYS . . . L 10 -39.727 54.125 15.707 1 98.19 ? H153 MYS 304 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 47 #