data_4I8Q # _model_server_result.job_id n68xNNh1URj4QqbGQfxgug _model_server_result.datetime_utc '2024-11-05 16:48:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i8q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4I8Q # _exptl.entry_id 4I8Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4I8Q _cell.length_a 98.04 _cell.length_b 118.07 _cell.length_c 128.21 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I8Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-y+1/2,z -1 0 0 0 -1 0 0 0 1 0 59.035 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id LEU _struct_conn.ptnr1_label_seq_id 202 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LEU _struct_conn.ptnr1_auth_seq_id 189 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id M _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 612 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.262 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 246 n n PA O2A NAD sing 247 n n PA O5B NAD sing 248 n n PA O3 NAD sing 249 n n O2A HOA2 NAD sing 250 n n O5B C5B NAD sing 251 n n C5B C4B NAD sing 252 n n C5B H51A NAD sing 253 n n C5B H52A NAD sing 254 n n C4B O4B NAD sing 255 n n C4B C3B NAD sing 256 n n C4B H4B NAD sing 257 n n O4B C1B NAD sing 258 n n C3B O3B NAD sing 259 n n C3B C2B NAD sing 260 n n C3B H3B NAD sing 261 n n O3B HO3A NAD sing 262 n n C2B O2B NAD sing 263 n n C2B C1B NAD sing 264 n n C2B H2B NAD sing 265 n n O2B HO2A NAD sing 266 n n C1B N9A NAD sing 267 n n C1B H1B NAD sing 268 n n N9A C8A NAD sing 269 n y N9A C4A NAD sing 270 n y C8A N7A NAD doub 271 n y C8A H8A NAD sing 272 n n N7A C5A NAD sing 273 n y C5A C6A NAD sing 274 n y C5A C4A NAD doub 275 n y C6A N6A NAD sing 276 n n C6A N1A NAD doub 277 n y N6A H61A NAD sing 278 n n N6A H62A NAD sing 279 n n N1A C2A NAD sing 280 n y C2A N3A NAD doub 281 n y C2A H2A NAD sing 282 n n N3A C4A NAD sing 283 n y O3 PN NAD sing 284 n n PN O1N NAD doub 285 n n PN O2N NAD sing 286 n n PN O5D NAD sing 287 n n O5D C5D NAD sing 288 n n C5D C4D NAD sing 289 n n C5D H51N NAD sing 290 n n C5D H52N NAD sing 291 n n C4D O4D NAD sing 292 n n C4D C3D NAD sing 293 n n C4D H4D NAD sing 294 n n O4D C1D NAD sing 295 n n C3D O3D NAD sing 296 n n C3D C2D NAD sing 297 n n C3D H3D NAD sing 298 n n O3D HO3N NAD sing 299 n n C2D O2D NAD sing 300 n n C2D C1D NAD sing 301 n n C2D H2D NAD sing 302 n n O2D HO2N NAD sing 303 n n C1D N1N NAD sing 304 n n C1D H1D NAD sing 305 n n N1N C2N NAD sing 306 n y N1N C6N NAD doub 307 n y C2N C3N NAD doub 308 n y C2N H2N NAD sing 309 n n C3N C7N NAD sing 310 n n C3N C4N NAD sing 311 n y C7N O7N NAD doub 312 n n C7N N7N NAD sing 313 n n N7N H71N NAD sing 314 n n N7N H72N NAD sing 315 n n C4N C5N NAD doub 316 n y C4N H4N NAD sing 317 n n C5N C6N NAD sing 318 n y C5N H5N NAD sing 319 n n C6N H6N NAD sing 320 n n # _atom_sites.entry_id 4I8Q _atom_sites.fract_transf_matrix[1][1] 0.0102 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00847 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 601 1 NAD NAD . C 3 EDO A 1 602 1 EDO EDO . D 3 EDO A 1 603 2 EDO EDO . E 3 EDO A 1 604 3 EDO EDO . F 3 EDO A 1 605 4 EDO EDO . G 3 EDO A 1 606 5 EDO EDO . H 4 PEG A 1 607 1 PEG PEG . I 3 EDO A 1 608 1 EDO EDO . J 3 EDO A 1 609 2 EDO EDO . K 4 PEG A 1 610 1 PEG PEG . L 4 PEG A 1 611 2 PEG PEG . M 5 NA A 1 612 1 NA NA . N 6 HOH A 1 701 1 HOH HOH . N 6 HOH A 2 702 2 HOH HOH . N 6 HOH A 3 703 3 HOH HOH . N 6 HOH A 4 704 4 HOH HOH . N 6 HOH A 5 705 5 HOH HOH . N 6 HOH A 6 706 6 HOH HOH . N 6 HOH A 7 707 7 HOH HOH . N 6 HOH A 8 708 8 HOH HOH . N 6 HOH A 9 709 9 HOH HOH . N 6 HOH A 10 710 10 HOH HOH . N 6 HOH A 11 711 11 HOH HOH . N 6 HOH A 12 712 12 HOH HOH . N 6 HOH A 13 713 13 HOH HOH . N 6 HOH A 14 714 14 HOH HOH . N 6 HOH A 15 715 15 HOH HOH . N 6 HOH A 16 716 16 HOH HOH . N 6 HOH A 17 717 17 HOH HOH . N 6 HOH A 18 718 18 HOH HOH . N 6 HOH A 19 719 20 HOH HOH . N 6 HOH A 20 720 21 HOH HOH . N 6 HOH A 21 722 24 HOH HOH . N 6 HOH A 22 723 25 HOH HOH . N 6 HOH A 23 724 26 HOH HOH . N 6 HOH A 24 725 27 HOH HOH . N 6 HOH A 25 726 28 HOH HOH . N 6 HOH A 26 727 29 HOH HOH . N 6 HOH A 27 728 32 HOH HOH . N 6 HOH A 28 729 33 HOH HOH . N 6 HOH A 29 730 34 HOH HOH . N 6 HOH A 30 731 35 HOH HOH . N 6 HOH A 31 732 36 HOH HOH . N 6 HOH A 32 733 37 HOH HOH . N 6 HOH A 33 734 38 HOH HOH . N 6 HOH A 34 735 39 HOH HOH . N 6 HOH A 35 736 40 HOH HOH . N 6 HOH A 36 737 41 HOH HOH . N 6 HOH A 37 738 42 HOH HOH . N 6 HOH A 38 739 43 HOH HOH . N 6 HOH A 39 740 44 HOH HOH . N 6 HOH A 40 741 45 HOH HOH . N 6 HOH A 41 742 46 HOH HOH . N 6 HOH A 42 743 47 HOH HOH . N 6 HOH A 43 744 48 HOH HOH . N 6 HOH A 44 745 49 HOH HOH . N 6 HOH A 45 746 50 HOH HOH . N 6 HOH A 46 747 51 HOH HOH . N 6 HOH A 47 748 52 HOH HOH . N 6 HOH A 48 749 53 HOH HOH . N 6 HOH A 49 750 54 HOH HOH . N 6 HOH A 50 751 55 HOH HOH . N 6 HOH A 51 752 56 HOH HOH . N 6 HOH A 52 753 57 HOH HOH . N 6 HOH A 53 754 58 HOH HOH . N 6 HOH A 54 755 59 HOH HOH . N 6 HOH A 55 756 60 HOH HOH . N 6 HOH A 56 757 61 HOH HOH . N 6 HOH A 57 758 62 HOH HOH . N 6 HOH A 58 759 63 HOH HOH . N 6 HOH A 59 760 64 HOH HOH . N 6 HOH A 60 761 65 HOH HOH . N 6 HOH A 61 762 66 HOH HOH . N 6 HOH A 62 763 67 HOH HOH . N 6 HOH A 63 764 68 HOH HOH . N 6 HOH A 64 765 69 HOH HOH . N 6 HOH A 65 766 70 HOH HOH . N 6 HOH A 66 767 71 HOH HOH . N 6 HOH A 67 768 72 HOH HOH . N 6 HOH A 68 769 73 HOH HOH . N 6 HOH A 69 770 74 HOH HOH . N 6 HOH A 70 771 75 HOH HOH . N 6 HOH A 71 772 76 HOH HOH . N 6 HOH A 72 773 77 HOH HOH . N 6 HOH A 73 774 78 HOH HOH . N 6 HOH A 74 775 80 HOH HOH . N 6 HOH A 75 776 81 HOH HOH . N 6 HOH A 76 777 82 HOH HOH . N 6 HOH A 77 778 83 HOH HOH . N 6 HOH A 78 779 84 HOH HOH . N 6 HOH A 79 780 86 HOH HOH . N 6 HOH A 80 781 87 HOH HOH . N 6 HOH A 81 782 88 HOH HOH . N 6 HOH A 82 783 89 HOH HOH . N 6 HOH A 83 784 90 HOH HOH . N 6 HOH A 84 785 92 HOH HOH . N 6 HOH A 85 786 93 HOH HOH . N 6 HOH A 86 787 94 HOH HOH . N 6 HOH A 87 788 95 HOH HOH . N 6 HOH A 88 789 96 HOH HOH . N 6 HOH A 89 790 97 HOH HOH . N 6 HOH A 90 791 98 HOH HOH . N 6 HOH A 91 792 99 HOH HOH . N 6 HOH A 92 793 100 HOH HOH . N 6 HOH A 93 794 102 HOH HOH . N 6 HOH A 94 795 103 HOH HOH . N 6 HOH A 95 796 104 HOH HOH . N 6 HOH A 96 797 106 HOH HOH . N 6 HOH A 97 798 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 -16.531 25.8 -8.668 1 39.27 ? PA NAD 601 A 1 HETATM 2 O O1A NAD . . . B 2 -15.372 26.689 -8.433 1 39.28 ? O1A NAD 601 A 1 HETATM 3 O O2A NAD . . . B 2 -17.452 25.702 -7.409 1 38.2 ? O2A NAD 601 A 1 HETATM 4 O O5B NAD . . . B 2 -16.018 24.353 -9.071 1 31.65 ? O5B NAD 601 A 1 HETATM 5 C C5B NAD . . . B 2 -15.667 23.902 -10.394 1 28.49 ? C5B NAD 601 A 1 HETATM 6 C C4B NAD . . . B 2 -15.019 22.546 -10.25 1 30.52 ? C4B NAD 601 A 1 HETATM 7 O O4B NAD . . . B 2 -13.905 22.62 -9.324 1 36.44 ? O4B NAD 601 A 1 HETATM 8 C C3B NAD . . . B 2 -15.902 21.412 -9.743 1 28.24 ? C3B NAD 601 A 1 HETATM 9 O O3B NAD . . . B 2 -15.591 20.242 -10.494 1 28 ? O3B NAD 601 A 1 HETATM 10 C C2B NAD . . . B 2 -15.548 21.348 -8.25 1 25.13 ? C2B NAD 601 A 1 HETATM 11 O O2B NAD . . . B 2 -15.822 20.092 -7.649 1 21.9 ? O2B NAD 601 A 1 HETATM 12 C C1B NAD . . . B 2 -14.057 21.649 -8.306 1 32.46 ? C1B NAD 601 A 1 HETATM 13 N N9A NAD . . . B 2 -13.446 22.164 -7.08 1 37.77 ? N9A NAD 601 A 1 HETATM 14 C C8A NAD . . . B 2 -14.047 22.885 -6.079 1 38.07 ? C8A NAD 601 A 1 HETATM 15 N N7A NAD . . . B 2 -13.251 23.182 -5.082 1 35.99 ? N7A NAD 601 A 1 HETATM 16 C C5A NAD . . . B 2 -12.041 22.608 -5.445 1 36.07 ? C5A NAD 601 A 1 HETATM 17 C C6A NAD . . . B 2 -10.795 22.526 -4.792 1 39.35 ? C6A NAD 601 A 1 HETATM 18 N N6A NAD . . . B 2 -10.573 22.987 -3.556 1 39.33 ? N6A NAD 601 A 1 HETATM 19 N N1A NAD . . . B 2 -9.78 21.916 -5.448 1 44.12 ? N1A NAD 601 A 1 HETATM 20 C C2A NAD . . . B 2 -10.012 21.401 -6.662 1 43.4 ? C2A NAD 601 A 1 HETATM 21 N N3A NAD . . . B 2 -11.154 21.379 -7.357 1 41.68 ? N3A NAD 601 A 1 HETATM 22 C C4A NAD . . . B 2 -12.139 22.002 -6.686 1 38.31 ? C4A NAD 601 A 1 HETATM 23 O O3 NAD . . . B 2 -17.428 26.382 -9.867 1 38.28 ? O3 NAD 601 A 1 HETATM 24 P PN NAD . . . B 2 -18.85 25.898 -10.429 1 34.2 ? PN NAD 601 A 1 HETATM 25 O O1N NAD . . . B 2 -18.765 24.433 -10.642 1 30.35 ? O1N NAD 601 A 1 HETATM 26 O O2N NAD . . . B 2 -19.907 26.427 -9.537 1 34.37 ? O2N NAD 601 A 1 HETATM 27 O O5D NAD . . . B 2 -18.916 26.667 -11.828 1 34.6 ? O5D NAD 601 A 1 HETATM 28 C C5D NAD . . . B 2 -19.553 27.94 -12.042 1 35.11 ? C5D NAD 601 A 1 HETATM 29 C C4D NAD . . . B 2 -18.485 28.98 -12.277 1 38 ? C4D NAD 601 A 1 HETATM 30 O O4D NAD . . . B 2 -17.711 28.62 -13.442 1 42.18 ? O4D NAD 601 A 1 HETATM 31 C C3D NAD . . . B 2 -18.968 30.401 -12.552 1 36.42 ? C3D NAD 601 A 1 HETATM 32 O O3D NAD . . . B 2 -18.144 31.338 -11.868 1 34.26 ? O3D NAD 601 A 1 HETATM 33 C C2D NAD . . . B 2 -18.799 30.5 -14.069 1 40.26 ? C2D NAD 601 A 1 HETATM 34 O O2D NAD . . . B 2 -18.759 31.812 -14.617 1 38.87 ? O2D NAD 601 A 1 HETATM 35 C C1D NAD . . . B 2 -17.491 29.697 -14.31 1 42.91 ? C1D NAD 601 A 1 HETATM 36 N N1N NAD . . . B 2 -17.452 29.116 -15.734 1 43.03 ? N1N NAD 601 A 1 HETATM 37 C C2N NAD . . . B 2 -16.48 29.669 -16.568 1 44.81 ? C2N NAD 601 A 1 HETATM 38 C C3N NAD . . . B 2 -16.352 29.231 -17.876 1 45.62 ? C3N NAD 601 A 1 HETATM 39 C C7N NAD . . . B 2 -15.367 29.874 -18.826 1 40.15 ? C7N NAD 601 A 1 HETATM 40 O O7N NAD . . . B 2 -15.251 29.433 -19.96 1 39.4 ? O7N NAD 601 A 1 HETATM 41 N N7N NAD . . . B 2 -14.65 30.904 -18.386 1 37.19 ? N7N NAD 601 A 1 HETATM 42 C C4N NAD . . . B 2 -17.205 28.226 -18.33 1 49.03 ? C4N NAD 601 A 1 HETATM 43 C C5N NAD . . . B 2 -18.164 27.685 -17.484 1 48.91 ? C5N NAD 601 A 1 HETATM 44 C C6N NAD . . . B 2 -18.27 28.145 -16.181 1 45.12 ? C6N NAD 601 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #