data_4I8V # _model_server_result.job_id X-VfVrOKE1GfUrV5MICUDQ _model_server_result.datetime_utc '2024-10-16 21:31:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4i8v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":602}' # _entry.id 4I8V # _exptl.entry_id 4I8V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 272.297 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-PHENYL-4H-BENZO[H]CHROMEN-4-ONE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4I8V _cell.length_a 65.003 _cell.length_b 195.491 _cell.length_c 235.855 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4I8V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,P 1 1 B,I,J,K,Q 2 1 C,L,M,R 3 1 D,N,O,S 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 J N N ? 3 M N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 430 A CYS 457 1_555 E FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc2 B SG CYS 430 B CYS 457 1_555 I FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc3 C SG CYS 430 C CYS 457 1_555 L FE HEM . C HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc4 D SG CYS 430 D CYS 457 1_555 N FE HEM . D HEM 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? # _chem_comp.formula 'C19 H12 O2' _chem_comp.formula_weight 272.297 _chem_comp.id BHF _chem_comp.mon_nstd_flag . _chem_comp.name 2-PHENYL-4H-BENZO[H]CHROMEN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7,8-BENZOFLAVONE;ALPHA-NAPHTHOFLAVONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C9 BHF sing 70 n y C8 C7 BHF doub 71 n y C8 H8 BHF sing 72 n n C9 O2 BHF doub 73 n n C9 C10 BHF sing 74 n y C10 C11 BHF sing 75 n y C10 C19 BHF doub 76 n y C11 C12 BHF doub 77 n y C11 H11 BHF sing 78 n n C12 C13 BHF sing 79 n y C12 H12 BHF sing 80 n n C13 C14 BHF doub 81 n y C13 C18 BHF sing 82 n y C14 C15 BHF sing 83 n y C14 H14 BHF sing 84 n n C15 C16 BHF doub 85 n y C15 H15 BHF sing 86 n n C16 C17 BHF sing 87 n y C16 H16 BHF sing 88 n n C17 C18 BHF doub 89 n y C17 H17 BHF sing 90 n n C18 C19 BHF sing 91 n y C19 O1 BHF sing 92 n y O1 C7 BHF sing 93 n y C7 C1 BHF sing 94 n y C1 C2 BHF doub 95 n y C1 C6 BHF sing 96 n y C2 C3 BHF sing 97 n y C2 H2 BHF sing 98 n n C3 C4 BHF doub 99 n y C3 H3 BHF sing 100 n n C4 C5 BHF sing 101 n y C4 H4 BHF sing 102 n n C5 C6 BHF doub 103 n y C5 H5 BHF sing 104 n n C6 H6 BHF sing 105 n n # _atom_sites.entry_id 4I8V _atom_sites.fract_transf_matrix[1][1] 0.015384 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005115 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00424 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 601 600 HEM HEM . F 3 BHF A 1 602 601 BHF BHF . G 4 NO3 A 1 603 711 NO3 NO3 . H 4 NO3 A 1 604 712 NO3 NO3 . I 2 HEM B 1 601 600 HEM HEM . J 3 BHF B 1 602 601 BHF BHF . K 4 NO3 B 1 603 713 NO3 NO3 . L 2 HEM C 1 600 600 HEM HEM . M 3 BHF C 1 601 601 BHF BHF . N 2 HEM D 1 600 600 HEM HEM . O 3 BHF D 1 601 601 BHF BHF . P 5 HOH A 1 701 1 HOH HOH . P 5 HOH A 2 702 2 HOH HOH . P 5 HOH A 3 703 3 HOH HOH . P 5 HOH A 4 704 4 HOH HOH . P 5 HOH A 5 705 7 HOH HOH . P 5 HOH A 6 706 8 HOH HOH . P 5 HOH A 7 707 9 HOH HOH . P 5 HOH A 8 708 10 HOH HOH . P 5 HOH A 9 709 11 HOH HOH . P 5 HOH A 10 710 15 HOH HOH . P 5 HOH A 11 711 16 HOH HOH . P 5 HOH A 12 712 17 HOH HOH . P 5 HOH A 13 713 18 HOH HOH . P 5 HOH A 14 714 21 HOH HOH . P 5 HOH A 15 715 22 HOH HOH . P 5 HOH A 16 716 24 HOH HOH . P 5 HOH A 17 717 25 HOH HOH . P 5 HOH A 18 718 27 HOH HOH . P 5 HOH A 19 719 31 HOH HOH . P 5 HOH A 20 720 34 HOH HOH . P 5 HOH A 21 721 36 HOH HOH . P 5 HOH A 22 722 38 HOH HOH . P 5 HOH A 23 723 43 HOH HOH . P 5 HOH A 24 724 45 HOH HOH . P 5 HOH A 25 725 46 HOH HOH . P 5 HOH A 26 726 49 HOH HOH . P 5 HOH A 27 727 50 HOH HOH . P 5 HOH A 28 728 53 HOH HOH . P 5 HOH A 29 729 57 HOH HOH . P 5 HOH A 30 730 58 HOH HOH . P 5 HOH A 31 731 60 HOH HOH . P 5 HOH A 32 732 63 HOH HOH . P 5 HOH A 33 733 66 HOH HOH . P 5 HOH A 34 734 68 HOH HOH . P 5 HOH A 35 735 71 HOH HOH . P 5 HOH A 36 736 74 HOH HOH . P 5 HOH A 37 737 81 HOH HOH . P 5 HOH A 38 738 91 HOH HOH . P 5 HOH A 39 739 92 HOH HOH . P 5 HOH A 40 740 94 HOH HOH . P 5 HOH A 41 741 95 HOH HOH . P 5 HOH A 42 742 99 HOH HOH . P 5 HOH A 43 743 100 HOH HOH . P 5 HOH A 44 744 106 HOH HOH . P 5 HOH A 45 745 119 HOH HOH . P 5 HOH A 46 746 121 HOH HOH . P 5 HOH A 47 747 124 HOH HOH . P 5 HOH A 48 748 126 HOH HOH . P 5 HOH A 49 749 131 HOH HOH . P 5 HOH A 50 750 144 HOH HOH . P 5 HOH A 51 751 146 HOH HOH . P 5 HOH A 52 752 147 HOH HOH . P 5 HOH A 53 753 152 HOH HOH . P 5 HOH A 54 754 157 HOH HOH . P 5 HOH A 55 755 161 HOH HOH . P 5 HOH A 56 756 162 HOH HOH . P 5 HOH A 57 757 167 HOH HOH . P 5 HOH A 58 758 168 HOH HOH . P 5 HOH A 59 759 171 HOH HOH . P 5 HOH A 60 760 181 HOH HOH . P 5 HOH A 61 761 195 HOH HOH . P 5 HOH A 62 762 197 HOH HOH . P 5 HOH A 63 763 200 HOH HOH . P 5 HOH A 64 764 205 HOH HOH . P 5 HOH A 65 765 214 HOH HOH . P 5 HOH A 66 766 220 HOH HOH . P 5 HOH A 67 767 222 HOH HOH . P 5 HOH A 68 768 232 HOH HOH . P 5 HOH A 69 769 239 HOH HOH . P 5 HOH A 70 770 245 HOH HOH . P 5 HOH A 71 771 246 HOH HOH . P 5 HOH A 72 772 263 HOH HOH . P 5 HOH A 73 773 270 HOH HOH . P 5 HOH A 74 774 275 HOH HOH . P 5 HOH A 75 775 283 HOH HOH . P 5 HOH A 76 776 285 HOH HOH . P 5 HOH A 77 777 288 HOH HOH . P 5 HOH A 78 778 297 HOH HOH . P 5 HOH A 79 779 302 HOH HOH . P 5 HOH A 80 780 304 HOH HOH . P 5 HOH A 81 781 318 HOH HOH . P 5 HOH A 82 782 319 HOH HOH . P 5 HOH A 83 783 320 HOH HOH . P 5 HOH A 84 784 330 HOH HOH . P 5 HOH A 85 785 344 HOH HOH . P 5 HOH A 86 786 353 HOH HOH . P 5 HOH A 87 787 374 HOH HOH . Q 5 HOH B 1 701 5 HOH HOH . Q 5 HOH B 2 702 6 HOH HOH . Q 5 HOH B 3 703 12 HOH HOH . Q 5 HOH B 4 704 13 HOH HOH . Q 5 HOH B 5 705 14 HOH HOH . Q 5 HOH B 6 706 19 HOH HOH . Q 5 HOH B 7 707 23 HOH HOH . Q 5 HOH B 8 708 26 HOH HOH . Q 5 HOH B 9 709 28 HOH HOH . Q 5 HOH B 10 710 30 HOH HOH . Q 5 HOH B 11 711 32 HOH HOH . Q 5 HOH B 12 712 33 HOH HOH . Q 5 HOH B 13 713 39 HOH HOH . Q 5 HOH B 14 714 40 HOH HOH . Q 5 HOH B 15 715 41 HOH HOH . Q 5 HOH B 16 716 42 HOH HOH . Q 5 HOH B 17 717 44 HOH HOH . Q 5 HOH B 18 718 48 HOH HOH . Q 5 HOH B 19 719 52 HOH HOH . Q 5 HOH B 20 720 54 HOH HOH . Q 5 HOH B 21 721 56 HOH HOH . Q 5 HOH B 22 722 62 HOH HOH . Q 5 HOH B 23 723 64 HOH HOH . Q 5 HOH B 24 724 65 HOH HOH . Q 5 HOH B 25 725 67 HOH HOH . Q 5 HOH B 26 726 69 HOH HOH . Q 5 HOH B 27 727 77 HOH HOH . Q 5 HOH B 28 728 78 HOH HOH . Q 5 HOH B 29 729 80 HOH HOH . Q 5 HOH B 30 730 82 HOH HOH . Q 5 HOH B 31 731 87 HOH HOH . Q 5 HOH B 32 732 96 HOH HOH . Q 5 HOH B 33 733 97 HOH HOH . Q 5 HOH B 34 734 101 HOH HOH . Q 5 HOH B 35 735 103 HOH HOH . Q 5 HOH B 36 736 108 HOH HOH . Q 5 HOH B 37 737 109 HOH HOH . Q 5 HOH B 38 738 112 HOH HOH . Q 5 HOH B 39 739 115 HOH HOH . Q 5 HOH B 40 740 116 HOH HOH . Q 5 HOH B 41 741 118 HOH HOH . Q 5 HOH B 42 742 122 HOH HOH . Q 5 HOH B 43 743 129 HOH HOH . Q 5 HOH B 44 744 130 HOH HOH . Q 5 HOH B 45 745 138 HOH HOH . Q 5 HOH B 46 746 139 HOH HOH . Q 5 HOH B 47 747 151 HOH HOH . Q 5 HOH B 48 748 153 HOH HOH . Q 5 HOH B 49 749 154 HOH HOH . Q 5 HOH B 50 750 160 HOH HOH . Q 5 HOH B 51 751 163 HOH HOH . Q 5 HOH B 52 752 164 HOH HOH . Q 5 HOH B 53 753 165 HOH HOH . Q 5 HOH B 54 754 169 HOH HOH . Q 5 HOH B 55 755 174 HOH HOH . Q 5 HOH B 56 756 175 HOH HOH . Q 5 HOH B 57 757 178 HOH HOH . Q 5 HOH B 58 758 192 HOH HOH . Q 5 HOH B 59 759 194 HOH HOH . Q 5 HOH B 60 760 199 HOH HOH . Q 5 HOH B 61 761 201 HOH HOH . Q 5 HOH B 62 762 204 HOH HOH . Q 5 HOH B 63 763 211 HOH HOH . Q 5 HOH B 64 764 238 HOH HOH . Q 5 HOH B 65 765 251 HOH HOH . Q 5 HOH B 66 766 254 HOH HOH . Q 5 HOH B 67 767 262 HOH HOH . Q 5 HOH B 68 768 266 HOH HOH . Q 5 HOH B 69 769 272 HOH HOH . Q 5 HOH B 70 770 290 HOH HOH . Q 5 HOH B 71 771 295 HOH HOH . Q 5 HOH B 72 772 329 HOH HOH . Q 5 HOH B 73 773 332 HOH HOH . Q 5 HOH B 74 774 333 HOH HOH . Q 5 HOH B 75 775 334 HOH HOH . Q 5 HOH B 76 776 335 HOH HOH . R 5 HOH C 1 701 37 HOH HOH . R 5 HOH C 2 702 176 HOH HOH . R 5 HOH C 3 703 180 HOH HOH . R 5 HOH C 4 704 216 HOH HOH . R 5 HOH C 5 705 219 HOH HOH . R 5 HOH C 6 706 264 HOH HOH . R 5 HOH C 7 707 279 HOH HOH . R 5 HOH C 8 708 287 HOH HOH . R 5 HOH C 9 709 323 HOH HOH . R 5 HOH C 10 710 363 HOH HOH . S 5 HOH D 1 701 47 HOH HOH . S 5 HOH D 2 702 76 HOH HOH . S 5 HOH D 3 703 107 HOH HOH . S 5 HOH D 4 704 114 HOH HOH . S 5 HOH D 5 705 149 HOH HOH . S 5 HOH D 6 706 218 HOH HOH . S 5 HOH D 7 707 242 HOH HOH . S 5 HOH D 8 708 310 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 BHF . . . J 3 -27.456 85.288 -3.139 1 66.19 ? C8 BHF 602 B 1 HETATM 2 C C9 BHF . . . J 3 -27.912 85.759 -1.884 1 67.79 ? C9 BHF 602 B 1 HETATM 3 O O2 BHF . . . J 3 -27.442 86.8 -1.338 1 79.35 ? O2 BHF 602 B 1 HETATM 4 C C10 BHF . . . J 3 -28.988 84.968 -1.212 1 62.35 ? C10 BHF 602 B 1 HETATM 5 C C11 BHF . . . J 3 -29.547 85.288 0.027 1 60.43 ? C11 BHF 602 B 1 HETATM 6 C C12 BHF . . . J 3 -30.543 84.435 0.55 1 67.61 ? C12 BHF 602 B 1 HETATM 7 C C13 BHF . . . J 3 -31.016 83.269 -0.126 1 63.27 ? C13 BHF 602 B 1 HETATM 8 C C14 BHF . . . J 3 -31.985 82.416 0.373 1 61.97 ? C14 BHF 602 B 1 HETATM 9 C C15 BHF . . . J 3 -32.383 81.282 -0.35 1 61.25 ? C15 BHF 602 B 1 HETATM 10 C C16 BHF . . . J 3 -31.841 80.934 -1.588 1 61.05 ? C16 BHF 602 B 1 HETATM 11 C C17 BHF . . . J 3 -30.874 81.754 -2.139 1 62.69 ? C17 BHF 602 B 1 HETATM 12 C C18 BHF . . . J 3 -30.48 82.883 -1.425 1 59.69 ? C18 BHF 602 B 1 HETATM 13 C C19 BHF . . . J 3 -29.459 83.755 -1.942 1 62.44 ? C19 BHF 602 B 1 HETATM 14 O O1 BHF . . . J 3 -28.978 83.363 -3.126 1 59.78 ? O1 BHF 602 B 1 HETATM 15 C C7 BHF . . . J 3 -28.014 84.1 -3.726 1 63.46 ? C7 BHF 602 B 1 HETATM 16 C C1 BHF . . . J 3 -27.648 83.444 -5.009 1 58.73 ? C1 BHF 602 B 1 HETATM 17 C C2 BHF . . . J 3 -28.351 82.27 -5.321 1 62.87 ? C2 BHF 602 B 1 HETATM 18 C C3 BHF . . . J 3 -28.044 81.594 -6.475 1 61.72 ? C3 BHF 602 B 1 HETATM 19 C C4 BHF . . . J 3 -27.044 82.109 -7.311 1 67.25 ? C4 BHF 602 B 1 HETATM 20 C C5 BHF . . . J 3 -26.332 83.272 -7.006 1 68.93 ? C5 BHF 602 B 1 HETATM 21 C C6 BHF . . . J 3 -26.631 83.932 -5.829 1 65.78 ? C6 BHF 602 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #