data_4IA0 # _model_server_result.job_id OqB5iQd0JiWdT537QTX1tg _model_server_result.datetime_utc '2025-02-18 09:24:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ia0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 4IA0 # _exptl.entry_id 4IA0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 569.555 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-bromo-2-{2-ethoxy-5-[(4-methylpiperazin-1-yl)sulfonyl]phenyl}-6-octylpyrimidin-4(3H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IA0 _cell.length_a 74.43 _cell.length_b 74.43 _cell.length_c 131.26 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IA0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 164 A CYS 677 1_555 A SG CYS 164 A CYS 677 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc1 A NE2 HIS 104 A HIS 617 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc2 A NE2 HIS 140 A HIS 653 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc3 A OD1 ASP 141 A ASP 654 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc4 A OD2 ASP 141 A ASP 654 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc5 A OD2 ASP 251 A ASP 764 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc6 C ZN ZN . A ZN 902 1_555 E O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc7 C ZN ZN . A ZN 902 1_555 E O HOH . A HOH 1067 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc8 D MG MG . A MG 903 1_555 E O HOH . A HOH 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc9 D MG MG . A MG 903 1_555 E O HOH . A HOH 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc10 D MG MG . A MG 903 1_555 E O HOH . A HOH 1060 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc11 D MG MG . A MG 903 1_555 E O HOH . A HOH 1067 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc12 D MG MG . A MG 903 1_555 E O HOH . A HOH 1068 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? # _chem_comp.formula 'C25 H37 Br N4 O4 S' _chem_comp.formula_weight 569.555 _chem_comp.id 5BB _chem_comp.mon_nstd_flag . _chem_comp.name 5-bromo-2-{2-ethoxy-5-[(4-methylpiperazin-1-yl)sulfonyl]phenyl}-6-octylpyrimidin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAK 5BB sing 1 n n CAK CAM 5BB sing 2 n n BR CBC 5BB sing 3 n n CAM CAN 5BB sing 4 n n CAN CAO 5BB sing 5 n n CAP CAO 5BB sing 6 n n CAP CAQ 5BB sing 7 n n CAQ CAR 5BB sing 8 n n CAR CBB 5BB sing 9 n n CBC CBB 5BB doub 10 n n CBC CBF 5BB sing 11 n n OAD CBF 5BB doub 12 n n CBB NAW 5BB sing 13 n n CBF NAX 5BB sing 14 n n NAW CBE 5BB doub 15 n n NAX CBE 5BB sing 16 n n CBE CBD 5BB sing 17 n n CAB CAL 5BB sing 18 n n OAY CAL 5BB sing 19 n n OAY CBA 5BB sing 20 n n CBD CBA 5BB doub 21 n y CBD CAJ 5BB sing 22 n y CBA CAI 5BB sing 23 n y CAJ CAZ 5BB doub 24 n y CAI CAH 5BB doub 25 n y CAZ CAH 5BB sing 26 n y CAZ SBI 5BB sing 27 n n OAF SBI 5BB doub 28 n n CAU CAS 5BB sing 29 n n CAU NBH 5BB sing 30 n n CAS NBG 5BB sing 31 n n CAC NBG 5BB sing 32 n n SBI NBH 5BB sing 33 n n SBI OAE 5BB doub 34 n n NBG CAT 5BB sing 35 n n NBH CAV 5BB sing 36 n n CAV CAT 5BB sing 37 n n CAU H1 5BB sing 38 n n CAU H2 5BB sing 39 n n CAS H3 5BB sing 40 n n CAS H4 5BB sing 41 n n CAC H6 5BB sing 42 n n CAC H7 5BB sing 43 n n CAC H8 5BB sing 44 n n CAT H9 5BB sing 45 n n CAT H10 5BB sing 46 n n CAV H11 5BB sing 47 n n CAV H12 5BB sing 48 n n CAJ H13 5BB sing 49 n n CAH H14 5BB sing 50 n n CAI H15 5BB sing 51 n n CAL H16 5BB sing 52 n n CAL H17 5BB sing 53 n n CAB H18 5BB sing 54 n n CAB H19 5BB sing 55 n n CAB H20 5BB sing 56 n n NAX H21 5BB sing 57 n n CAR H22 5BB sing 58 n n CAR H23 5BB sing 59 n n CAQ H24 5BB sing 60 n n CAP H25 5BB sing 61 n n CAO H26 5BB sing 62 n n CAN H27 5BB sing 63 n n CAM H28 5BB sing 64 n n CAM H29 5BB sing 65 n n CAK H30 5BB sing 66 n n CAK H31 5BB sing 67 n n CAA H32 5BB sing 68 n n CAA H33 5BB sing 69 n n CAA H34 5BB sing 70 n n CAQ H5 5BB sing 71 n n CAP H35 5BB sing 72 n n CAO H36 5BB sing 73 n n CAN H37 5BB sing 74 n n # _atom_sites.entry_id 4IA0 _atom_sites.fract_transf_matrix[1][1] 0.013435 _atom_sites.fract_transf_matrix[1][2] 0.007757 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007618 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5BB A 1 901 1 5BB DRG . C 3 ZN A 1 902 1 ZN ZN . D 4 MG A 1 903 1 MG MG . E 5 HOH A 1 1001 1 HOH HOH . E 5 HOH A 2 1002 2 HOH HOH . E 5 HOH A 3 1003 3 HOH HOH . E 5 HOH A 4 1004 4 HOH HOH . E 5 HOH A 5 1005 5 HOH HOH . E 5 HOH A 6 1006 6 HOH HOH . E 5 HOH A 7 1007 7 HOH HOH . E 5 HOH A 8 1008 8 HOH HOH . E 5 HOH A 9 1009 9 HOH HOH . E 5 HOH A 10 1010 10 HOH HOH . E 5 HOH A 11 1011 11 HOH HOH . E 5 HOH A 12 1012 12 HOH HOH . E 5 HOH A 13 1013 13 HOH HOH . E 5 HOH A 14 1014 14 HOH HOH . E 5 HOH A 15 1015 15 HOH HOH . E 5 HOH A 16 1016 16 HOH HOH . E 5 HOH A 17 1017 17 HOH HOH . E 5 HOH A 18 1018 18 HOH HOH . E 5 HOH A 19 1019 19 HOH HOH . E 5 HOH A 20 1020 20 HOH HOH . E 5 HOH A 21 1021 21 HOH HOH . E 5 HOH A 22 1022 22 HOH HOH . E 5 HOH A 23 1023 23 HOH HOH . E 5 HOH A 24 1024 24 HOH HOH . E 5 HOH A 25 1025 25 HOH HOH . E 5 HOH A 26 1026 26 HOH HOH . E 5 HOH A 27 1027 27 HOH HOH . E 5 HOH A 28 1028 28 HOH HOH . E 5 HOH A 29 1029 29 HOH HOH . E 5 HOH A 30 1030 30 HOH HOH . E 5 HOH A 31 1031 31 HOH HOH . E 5 HOH A 32 1032 32 HOH HOH . E 5 HOH A 33 1033 33 HOH HOH . E 5 HOH A 34 1034 34 HOH HOH . E 5 HOH A 35 1035 35 HOH HOH . E 5 HOH A 36 1036 36 HOH HOH . E 5 HOH A 37 1037 37 HOH HOH . E 5 HOH A 38 1038 38 HOH HOH . E 5 HOH A 39 1039 39 HOH HOH . E 5 HOH A 40 1040 40 HOH HOH . E 5 HOH A 41 1041 41 HOH HOH . E 5 HOH A 42 1042 42 HOH HOH . E 5 HOH A 43 1043 43 HOH HOH . E 5 HOH A 44 1044 44 HOH HOH . E 5 HOH A 45 1045 45 HOH HOH . E 5 HOH A 46 1046 46 HOH HOH . E 5 HOH A 47 1047 47 HOH HOH . E 5 HOH A 48 1048 48 HOH HOH . E 5 HOH A 49 1049 49 HOH HOH . E 5 HOH A 50 1050 50 HOH HOH . E 5 HOH A 51 1051 51 HOH HOH . E 5 HOH A 52 1052 52 HOH HOH . E 5 HOH A 53 1053 53 HOH HOH . E 5 HOH A 54 1054 54 HOH HOH . E 5 HOH A 55 1055 55 HOH HOH . E 5 HOH A 56 1056 56 HOH HOH . E 5 HOH A 57 1057 57 HOH HOH . E 5 HOH A 58 1058 58 HOH HOH . E 5 HOH A 59 1059 59 HOH HOH . E 5 HOH A 60 1060 60 HOH HOH . E 5 HOH A 61 1061 61 HOH HOH . E 5 HOH A 62 1062 62 HOH HOH . E 5 HOH A 63 1063 63 HOH HOH . E 5 HOH A 64 1064 64 HOH HOH . E 5 HOH A 65 1065 65 HOH HOH . E 5 HOH A 66 1066 66 HOH HOH . E 5 HOH A 67 1067 67 HOH HOH . E 5 HOH A 68 1068 68 HOH HOH . E 5 HOH A 69 1069 69 HOH HOH . E 5 HOH A 70 1070 70 HOH HOH . E 5 HOH A 71 1071 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAU 5BB . . . B 2 -24.983 20.724 23.129 1 59.13 ? CAU 5BB 901 A 1 HETATM 2 C CAS 5BB . . . B 2 -23.528 21.045 23.329 1 54.55 ? CAS 5BB 901 A 1 HETATM 3 N NBG 5BB . . . B 2 -22.822 19.968 23.963 1 57.34 ? NBG 5BB 901 A 1 HETATM 4 C CAC 5BB . . . B 2 -21.387 19.817 23.832 1 47.04 ? CAC 5BB 901 A 1 HETATM 5 C CAT 5BB . . . B 2 -23.431 19.541 25.191 1 58.12 ? CAT 5BB 901 A 1 HETATM 6 C CAV 5BB . . . B 2 -24.883 19.182 24.997 1 59.21 ? CAV 5BB 901 A 1 HETATM 7 N NBH 5BB . . . B 2 -25.682 20.162 24.276 1 55.4 ? NBH 5BB 901 A 1 HETATM 8 S SBI 5BB . . . B 2 -27.335 20.212 23.926 1 51.96 ? SBI 5BB 901 A 1 HETATM 9 O OAE 5BB . . . B 2 -28.226 20.216 25.1 1 51.27 ? OAE 5BB 901 A 1 HETATM 10 O OAF 5BB . . . B 2 -27.653 21.368 23.11 1 54.23 ? OAF 5BB 901 A 1 HETATM 11 C CAZ 5BB . . . B 2 -27.7 18.727 23.013 1 48.97 ? CAZ 5BB 901 A 1 HETATM 12 C CAJ 5BB . . . B 2 -28.043 18.833 21.648 1 43.14 ? CAJ 5BB 901 A 1 HETATM 13 C CAH 5BB . . . B 2 -27.619 17.484 23.631 1 46.41 ? CAH 5BB 901 A 1 HETATM 14 C CAI 5BB . . . B 2 -27.901 16.318 22.902 1 47.74 ? CAI 5BB 901 A 1 HETATM 15 C CBA 5BB . . . B 2 -28.24 16.423 21.54 1 44.97 ? CBA 5BB 901 A 1 HETATM 16 O OAY 5BB . . . B 2 -28.53 15.299 20.761 1 41.1 ? OAY 5BB 901 A 1 HETATM 17 C CAL 5BB . . . B 2 -28.254 13.97 21.161 1 42.27 ? CAL 5BB 901 A 1 HETATM 18 C CAB 5BB . . . B 2 -28.932 12.892 20.304 1 40.2 ? CAB 5BB 901 A 1 HETATM 19 C CBD 5BB . . . B 2 -28.306 17.687 20.921 1 45.66 ? CBD 5BB 901 A 1 HETATM 20 C CBE 5BB . . . B 2 -28.693 17.836 19.466 1 41.96 ? CBE 5BB 901 A 1 HETATM 21 N NAW 5BB . . . B 2 -28.058 18.733 18.695 1 42.96 ? NAW 5BB 901 A 1 HETATM 22 N NAX 5BB . . . B 2 -29.693 17.079 18.976 1 41.25 ? NAX 5BB 901 A 1 HETATM 23 C CBF 5BB . . . B 2 -30.079 17.191 17.687 1 40.05 ? CBF 5BB 901 A 1 HETATM 24 O OAD 5BB . . . B 2 -31.116 16.371 17.218 1 36.58 ? OAD 5BB 901 A 1 HETATM 25 C CBC 5BB . . . B 2 -29.439 18.121 16.855 1 39.37 ? CBC 5BB 901 A 1 HETATM 26 BR BR 5BB . . . B 2 -30.019 18.278 15.007 1 57.34 ? BR 5BB 901 A 1 HETATM 27 C CBB 5BB . . . B 2 -28.39 18.906 17.394 1 42.63 ? CBB 5BB 901 A 1 HETATM 28 C CAR 5BB . . . B 2 -27.608 19.968 16.586 1 40.7 ? CAR 5BB 901 A 1 HETATM 29 C CAQ 5BB . . . B 2 -26.14 19.742 16.147 1 43.13 ? CAQ 5BB 901 A 1 HETATM 30 C CAP 5BB . . . B 2 -25.231 20.932 16.008 1 43.63 ? CAP 5BB 901 A 1 HETATM 31 C CAO 5BB . . . B 2 -25.847 22.312 16.043 1 44.62 ? CAO 5BB 901 A 1 HETATM 32 C CAN 5BB . . . B 2 -25.22 23.395 15.203 1 43.72 ? CAN 5BB 901 A 1 HETATM 33 C CAM 5BB . . . B 2 -25.943 24.759 15.105 1 45.43 ? CAM 5BB 901 A 1 HETATM 34 C CAK 5BB . . . B 2 -27.256 24.844 14.377 1 43.27 ? CAK 5BB 901 A 1 HETATM 35 C CAA 5BB . . . B 2 -27.52 26.019 13.455 1 41.43 ? CAA 5BB 901 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #