data_4IA2 # _model_server_result.job_id Gv3ljn6FCNH8d0eMh_3JcA _model_server_result.datetime_utc '2024-11-25 06:59:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ia2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4IA2 # _exptl.entry_id 4IA2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 502.769 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 21-NOR-9,10-SECOCHOLESTA-5,7,10(19)-TRIENE-1,3,25-TRIOL,20-(4-HYDROXY-4-METHYLPENTYL)-,(1A,3B,5Z,7E) _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IA2 _cell.length_a 65.77 _cell.length_b 65.77 _cell.length_c 266.421 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IA2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 32.885 56.958491 44.4035 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H54 O4' _chem_comp.formula_weight 502.769 _chem_comp.id BIV _chem_comp.mon_nstd_flag . _chem_comp.name '21-NOR-9,10-SECOCHOLESTA-5,7,10(19)-TRIENE-1,3,25-TRIOL, 20-(4-HYDROXY-4-METHYLPENTYL)-, (1A,3B,5Z,7E)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GEMINI # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C3 BIV sing 70 n n O2 HO2 BIV sing 71 n n O3 C25 BIV sing 72 n n O3 HO3 BIV sing 73 n n C1 C2 BIV sing 74 n n C1 C10 BIV sing 75 n n C1 O1 BIV sing 76 n n C1 H1 BIV sing 77 n n C2 C3 BIV sing 78 n n C2 H21 BIV sing 79 n n C2 H22 BIV sing 80 n n C3 C4 BIV sing 81 n n C3 H3 BIV sing 82 n n C4 C5 BIV sing 83 n n C4 H41 BIV sing 84 n n C4 H42 BIV sing 85 n n C5 C6 BIV doub 86 z n C5 C10 BIV sing 87 n n C6 C7 BIV sing 88 n n C6 H6 BIV sing 89 n n C7 C8 BIV doub 90 e n C7 H7 BIV sing 91 n n C8 C9 BIV sing 92 n n C8 C14 BIV sing 93 n n C9 C11 BIV sing 94 n n C9 H91 BIV sing 95 n n C9 H92 BIV sing 96 n n C10 C19 BIV doub 97 n n C11 C12 BIV sing 98 n n C11 H111 BIV sing 99 n n C11 H112 BIV sing 100 n n C12 C13 BIV sing 101 n n C12 H121 BIV sing 102 n n C12 H122 BIV sing 103 n n C13 C14 BIV sing 104 n n C13 C17 BIV sing 105 n n C13 C18 BIV sing 106 n n C14 C15 BIV sing 107 n n C14 H14 BIV sing 108 n n C15 C16 BIV sing 109 n n C15 H151 BIV sing 110 n n C15 H152 BIV sing 111 n n C16 C17 BIV sing 112 n n C16 H161 BIV sing 113 n n C16 H162 BIV sing 114 n n C17 C20 BIV sing 115 n n C17 H17 BIV sing 116 n n C18 H181 BIV sing 117 n n C18 H182 BIV sing 118 n n C18 H183 BIV sing 119 n n C19 H191 BIV sing 120 n n C19 H192 BIV sing 121 n n C20 C22 BIV sing 122 n n C20 C21 BIV sing 123 n n C20 H20 BIV sing 124 n n C22 C23 BIV sing 125 n n C22 H221 BIV sing 126 n n C22 H222 BIV sing 127 n n C23 C24 BIV sing 128 n n C23 H231 BIV sing 129 n n C23 H232 BIV sing 130 n n C24 C25 BIV sing 131 n n C24 H241 BIV sing 132 n n C24 H242 BIV sing 133 n n C25 C26 BIV sing 134 n n C25 C27 BIV sing 135 n n C26 H261 BIV sing 136 n n C26 H262 BIV sing 137 n n C26 H263 BIV sing 138 n n C27 H271 BIV sing 139 n n C27 H272 BIV sing 140 n n C27 H273 BIV sing 141 n n O1 HO1 BIV sing 142 n n C21 C28 BIV sing 143 n n C21 H211 BIV sing 144 n n C21 H212 BIV sing 145 n n C28 C29 BIV sing 146 n n C28 H281 BIV sing 147 n n C28 H282 BIV sing 148 n n C29 C30 BIV sing 149 n n C29 H291 BIV sing 150 n n C29 H292 BIV sing 151 n n C30 O4 BIV sing 152 n n C30 C32 BIV sing 153 n n C30 C33 BIV sing 154 n n O4 HO4 BIV sing 155 n n C32 H321 BIV sing 156 n n C32 H322 BIV sing 157 n n C32 H323 BIV sing 158 n n C33 H331 BIV sing 159 n n C33 H332 BIV sing 160 n n C33 H333 BIV sing 161 n n # _atom_sites.entry_id 4IA2 _atom_sites.fract_transf_matrix[1][1] 0.015205 _atom_sites.fract_transf_matrix[1][2] 0.008778 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017557 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BIV A 1 501 525 BIV LI8 . D 4 HOH A 1 601 1 HOH TIP . D 4 HOH A 2 602 2 HOH TIP . D 4 HOH A 3 603 3 HOH TIP . D 4 HOH A 4 604 4 HOH TIP . D 4 HOH A 5 605 6 HOH TIP . D 4 HOH A 6 606 7 HOH TIP . D 4 HOH A 7 607 8 HOH TIP . D 4 HOH A 8 608 9 HOH TIP . D 4 HOH A 9 609 11 HOH TIP . D 4 HOH A 10 610 12 HOH TIP . D 4 HOH A 11 611 13 HOH TIP . D 4 HOH A 12 612 14 HOH TIP . D 4 HOH A 13 613 15 HOH TIP . D 4 HOH A 14 614 16 HOH TIP . D 4 HOH A 15 615 17 HOH TIP . D 4 HOH A 16 616 18 HOH TIP . D 4 HOH A 17 617 19 HOH TIP . D 4 HOH A 18 618 20 HOH TIP . D 4 HOH A 19 619 21 HOH TIP . D 4 HOH A 20 620 22 HOH TIP . D 4 HOH A 21 621 23 HOH TIP . D 4 HOH A 22 622 24 HOH TIP . D 4 HOH A 23 623 25 HOH TIP . D 4 HOH A 24 624 26 HOH TIP . D 4 HOH A 25 625 27 HOH TIP . D 4 HOH A 26 626 29 HOH TIP . D 4 HOH A 27 627 30 HOH TIP . D 4 HOH A 28 628 31 HOH TIP . D 4 HOH A 29 629 32 HOH TIP . D 4 HOH A 30 630 33 HOH TIP . D 4 HOH A 31 631 34 HOH TIP . D 4 HOH A 32 632 35 HOH TIP . D 4 HOH A 33 633 36 HOH TIP . D 4 HOH A 34 634 37 HOH TIP . D 4 HOH A 35 635 39 HOH TIP . D 4 HOH A 36 636 40 HOH TIP . D 4 HOH A 37 637 41 HOH TIP . D 4 HOH A 38 638 42 HOH TIP . D 4 HOH A 39 639 43 HOH TIP . D 4 HOH A 40 640 44 HOH TIP . D 4 HOH A 41 641 45 HOH TIP . D 4 HOH A 42 642 46 HOH TIP . D 4 HOH A 43 643 47 HOH TIP . D 4 HOH A 44 644 48 HOH TIP . D 4 HOH A 45 645 49 HOH TIP . D 4 HOH A 46 646 50 HOH TIP . D 4 HOH A 47 647 51 HOH TIP . D 4 HOH A 48 648 52 HOH TIP . D 4 HOH A 49 649 53 HOH TIP . D 4 HOH A 50 650 54 HOH TIP . D 4 HOH A 51 651 55 HOH TIP . D 4 HOH A 52 652 57 HOH TIP . D 4 HOH A 53 653 58 HOH TIP . E 4 HOH B 1 701 5 HOH TIP . E 4 HOH B 2 702 10 HOH TIP . E 4 HOH B 3 703 28 HOH TIP . E 4 HOH B 4 704 38 HOH TIP . E 4 HOH B 5 705 56 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 BIV . . . C 3 0.853 39.762 40.383 1 63.98 ? O2 BIV 501 A 1 HETATM 2 O O3 BIV . . . C 3 5.516 26.417 34.104 1 70.32 ? O3 BIV 501 A 1 HETATM 3 C C1 BIV . . . C 3 3.247 38.493 39.002 1 66.72 ? C1 BIV 501 A 1 HETATM 4 C C2 BIV . . . C 3 2.509 39.818 38.594 1 66.66 ? C2 BIV 501 A 1 HETATM 5 C C3 BIV . . . C 3 0.952 39.751 38.965 1 66.26 ? C3 BIV 501 A 1 HETATM 6 C C4 BIV . . . C 3 0.247 38.433 38.398 1 66.18 ? C4 BIV 501 A 1 HETATM 7 C C5 BIV . . . C 3 1.003 37.082 38.615 1 65.18 ? C5 BIV 501 A 1 HETATM 8 C C6 BIV . . . C 3 0.406 35.888 39.037 1 63.58 ? C6 BIV 501 A 1 HETATM 9 C C7 BIV . . . C 3 0.953 34.528 39.292 1 61.91 ? C7 BIV 501 A 1 HETATM 10 C C8 BIV . . . C 3 0.501 33.345 39.056 1 61.7 ? C8 BIV 501 A 1 HETATM 11 C C9 BIV . . . C 3 -0.915 33.001 38.355 1 61.68 ? C9 BIV 501 A 1 HETATM 12 C C10 BIV . . . C 3 2.561 37.261 38.278 1 66.32 ? C10 BIV 501 A 1 HETATM 13 C C11 BIV . . . C 3 -0.757 32.154 36.994 1 62.37 ? C11 BIV 501 A 1 HETATM 14 C C12 BIV . . . C 3 0.26 30.894 37.223 1 62.34 ? C12 BIV 501 A 1 HETATM 15 C C13 BIV . . . C 3 1.689 31.159 38.083 1 62.89 ? C13 BIV 501 A 1 HETATM 16 C C14 BIV . . . C 3 1.28 32.046 39.423 1 62.08 ? C14 BIV 501 A 1 HETATM 17 C C15 BIV . . . C 3 2.802 32.187 40.171 1 62.42 ? C15 BIV 501 A 1 HETATM 18 C C16 BIV . . . C 3 3.461 30.803 39.77 1 63.36 ? C16 BIV 501 A 1 HETATM 19 C C17 BIV . . . C 3 2.363 30.068 38.928 1 63.92 ? C17 BIV 501 A 1 HETATM 20 C C18 BIV . . . C 3 2.601 32.081 36.911 1 62.58 ? C18 BIV 501 A 1 HETATM 21 C C19 BIV . . . C 3 3.248 36.422 37.416 1 64.87 ? C19 BIV 501 A 1 HETATM 22 C C20 BIV . . . C 3 2.954 28.871 37.983 1 66.35 ? C20 BIV 501 A 1 HETATM 23 C C22 BIV . . . C 3 4.16 28.922 36.959 1 67.75 ? C22 BIV 501 A 1 HETATM 24 C C23 BIV . . . C 3 3.664 28.641 35.517 1 66.99 ? C23 BIV 501 A 1 HETATM 25 C C24 BIV . . . C 3 4.633 28.671 34.429 1 68.84 ? C24 BIV 501 A 1 HETATM 26 C C25 BIV . . . C 3 5.006 27.548 33.445 1 70.29 ? C25 BIV 501 A 1 HETATM 27 C C26 BIV . . . C 3 3.797 27.163 32.597 1 69.79 ? C26 BIV 501 A 1 HETATM 28 C C27 BIV . . . C 3 6.117 28.045 32.446 1 70.35 ? C27 BIV 501 A 1 HETATM 29 O O1 BIV . . . C 3 4.698 38.61 38.626 1 68.3 ? O1 BIV 501 A 1 HETATM 30 C C21 BIV . . . C 3 3.274 27.707 38.833 1 67.87 ? C21 BIV 501 A 1 HETATM 31 C C28 BIV . . . C 3 4.172 26.564 39.196 1 69.38 ? C28 BIV 501 A 1 HETATM 32 C C29 BIV . . . C 3 4.027 26.29 40.701 1 72.92 ? C29 BIV 501 A 1 HETATM 33 C C30 BIV . . . C 3 3.366 24.902 41.055 1 73.88 ? C30 BIV 501 A 1 HETATM 34 O O4 BIV . . . C 3 3.532 23.846 39.922 1 73.93 ? O4 BIV 501 A 1 HETATM 35 C C32 BIV . . . C 3 1.864 25.116 41.336 1 73.43 ? C32 BIV 501 A 1 HETATM 36 C C33 BIV . . . C 3 4.044 24.349 42.327 1 73.3 ? C33 BIV 501 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 36 #