data_4IAH # _model_server_result.job_id YwZePK0daLgypXnd5AFHdA _model_server_result.datetime_utc '2024-11-22 13:39:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4iah # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 4IAH # _exptl.entry_id 4IAH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IAH _cell.length_a 122.573 _cell.length_b 122.573 _cell.length_c 122.573 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IAH _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA trimeric 3 software_defined_assembly 3 PISA trimeric 3 software_defined_assembly 4 PISA hexameric 6 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 A,C,D,G 3 1,2,3 B,E,F,H 4 1,2,3 A,B,C,D,E,F,G,H 5 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_454 -z-1/2,-x,y-1/2 0 0 -1 -1 0 0 0 1 0 -61.2865 0 -61.2865 3 'crystal symmetry operation' 10_554 -y,z+1/2,-x-1/2 0 -1 0 0 0 1 -1 0 0 0 61.2865 -61.2865 4 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 5 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 121 A GLU 121 1_555 A N SNC 122 A SNC 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C SNC 122 A SNC 122 1_555 A N GLN 123 A GLN 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B C GLU 121 B GLU 121 1_555 B N SNC 122 B SNC 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C SNC 122 B SNC 122 1_555 B N GLN 123 B GLN 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 318 n n C1 C3 MLI sing 319 n n C1 H11 MLI sing 320 n n C1 H12 MLI sing 321 n n C2 O6 MLI doub 322 n n C2 O7 MLI sing 323 n n C3 O8 MLI doub 324 n n C3 O9 MLI sing 325 n n # _atom_sites.entry_id 4IAH _atom_sites.fract_transf_matrix[1][1] 0.008158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1DX A 1 201 1 1DX 1DX . D 3 MLI A 1 202 1 MLI MLI . E 2 1DX B 1 201 2 1DX 1DX . F 3 MLI B 1 202 2 MLI MLI . G 4 HOH A 1 301 2 HOH HOH . G 4 HOH A 2 302 6 HOH HOH . G 4 HOH A 3 303 12 HOH HOH . G 4 HOH A 4 304 15 HOH HOH . G 4 HOH A 5 305 18 HOH HOH . G 4 HOH A 6 306 21 HOH HOH . G 4 HOH A 7 307 22 HOH HOH . G 4 HOH A 8 308 23 HOH HOH . G 4 HOH A 9 309 25 HOH HOH . G 4 HOH A 10 310 26 HOH HOH . G 4 HOH A 11 311 29 HOH HOH . G 4 HOH A 12 312 30 HOH HOH . G 4 HOH A 13 313 32 HOH HOH . G 4 HOH A 14 314 35 HOH HOH . G 4 HOH A 15 315 39 HOH HOH . H 4 HOH B 1 301 3 HOH HOH . H 4 HOH B 2 302 4 HOH HOH . H 4 HOH B 3 303 5 HOH HOH . H 4 HOH B 4 304 7 HOH HOH . H 4 HOH B 5 305 8 HOH HOH . H 4 HOH B 6 306 9 HOH HOH . H 4 HOH B 7 307 10 HOH HOH . H 4 HOH B 8 308 11 HOH HOH . H 4 HOH B 9 309 13 HOH HOH . H 4 HOH B 10 310 14 HOH HOH . H 4 HOH B 11 311 16 HOH HOH . H 4 HOH B 12 312 19 HOH HOH . H 4 HOH B 13 313 24 HOH HOH . H 4 HOH B 14 314 28 HOH HOH . H 4 HOH B 15 315 31 HOH HOH . H 4 HOH B 16 316 33 HOH HOH . H 4 HOH B 17 317 34 HOH HOH . H 4 HOH B 18 318 36 HOH HOH . H 4 HOH B 19 319 37 HOH HOH . H 4 HOH B 20 320 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . D 3 -24.356 14.168 -8.98 1 55.37 ? C1 MLI 202 A 1 HETATM 2 C C2 MLI . . . D 3 -23.321 15.129 -8.453 1 55.33 ? C2 MLI 202 A 1 HETATM 3 C C3 MLI . . . D 3 -25.625 14.942 -9.239 1 55.5 ? C3 MLI 202 A 1 HETATM 4 O O6 MLI . . . D 3 -22.954 16.064 -9.2 1 55.3 ? O6 MLI 202 A 1 HETATM 5 O O7 MLI . . . D 3 -22.929 14.992 -7.274 1 55.09 ? O7 MLI 202 A 1 HETATM 6 O O8 MLI . . . D 3 -25.595 15.862 -10.088 1 55.45 ? O8 MLI 202 A 1 HETATM 7 O O9 MLI . . . D 3 -26.634 14.673 -8.55 1 55.48 ? O9 MLI 202 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #