data_4IAO # _model_server_result.job_id IP6KG91yAW9bQMPniJRDnQ _model_server_result.datetime_utc '2025-02-05 17:54:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4iao # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 4IAO # _exptl.entry_id 4IAO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.316 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE-5-DIPHOSPHORIBOSE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IAO _cell.length_a 166.406 _cell.length_b 178.752 _cell.length_c 121.564 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IAO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,K 1 1 B,D,G,H,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 302 A CYS 372 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc2 A SG CYS 305 A CYS 375 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc3 A SG CYS 326 A CYS 396 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc4 A SG CYS 329 A CYS 399 1_555 E ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc5 B SG CYS 302 B CYS 372 1_555 G ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc6 B SG CYS 305 B CYS 375 1_555 G ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc7 B SG CYS 326 B CYS 396 1_555 G ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc8 B SG CYS 329 B CYS 399 1_555 G ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? # _chem_comp.formula 'C15 H23 N5 O14 P2' _chem_comp.formula_weight 559.316 _chem_comp.id APR _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE-5-DIPHOSPHORIBOSE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 APR sing 13 n y N1 C6 APR doub 14 n y C2 N3 APR doub 15 n y C2 H2 APR sing 16 n n N3 C4 APR sing 17 n y C4 C5 APR doub 18 n y C4 N9 APR sing 19 n y C5 C6 APR sing 20 n y C5 N7 APR sing 21 n y C6 N6 APR sing 22 n n N6 H61 APR sing 23 n n N6 H62 APR sing 24 n n N7 C8 APR doub 25 n y C8 N9 APR sing 26 n y C8 H8 APR sing 27 n n N9 C1' APR sing 28 n n C1' C2' APR sing 29 n n C1' O4' APR sing 30 n n C1' "H'1" APR sing 31 n n C2' O2' APR sing 32 n n C2' C3' APR sing 33 n n C2' "H'2" APR sing 34 n n O2' "HO'2" APR sing 35 n n C3' O3' APR sing 36 n n C3' C4' APR sing 37 n n C3' "H'3" APR sing 38 n n O3' "HO'3" APR sing 39 n n O4' C4' APR sing 40 n n C4' C5' APR sing 41 n n C4' "H'4" APR sing 42 n n C5' O5' APR sing 43 n n C5' "H5'1" APR sing 44 n n C5' "H5'2" APR sing 45 n n O5' PA APR sing 46 n n PA O1A APR doub 47 n n PA O2A APR sing 48 n n PA O3A APR sing 49 n n O2A HOA2 APR sing 50 n n O3A PB APR sing 51 n n PB O1B APR doub 52 n n PB O2B APR sing 53 n n PB O5D APR sing 54 n n O2B HOB2 APR sing 55 n n O5D C5D APR sing 56 n n C5D C4D APR sing 57 n n C5D H5R1 APR sing 58 n n C5D H5R2 APR sing 59 n n O4D C1D APR sing 60 n n O4D C4D APR sing 61 n n O1D C1D APR sing 62 n n O1D HOR1 APR sing 63 n n C1D C2D APR sing 64 n n C1D "HR'1" APR sing 65 n n O2D C2D APR sing 66 n n O2D HOR2 APR sing 67 n n C2D C3D APR sing 68 n n C2D "HR'2" APR sing 69 n n O3D C3D APR sing 70 n n O3D HOR3 APR sing 71 n n C3D C4D APR sing 72 n n C3D "HR'3" APR sing 73 n n C4D "HR'4" APR sing 74 n n # _atom_sites.entry_id 4IAO _atom_sites.fract_transf_matrix[1][1] 0.006009 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 601 1 ZN ZN . F 4 APR A 1 602 1682 APR APR . G 3 ZN B 1 601 2 ZN ZN . H 4 APR B 1 602 1683 APR APR . I 5 HOH A 1 701 1 HOH HOH . I 5 HOH A 2 702 2 HOH HOH . I 5 HOH A 3 703 15 HOH HOH . I 5 HOH A 4 704 16 HOH HOH . I 5 HOH A 5 705 17 HOH HOH . I 5 HOH A 6 706 18 HOH HOH . I 5 HOH A 7 707 21 HOH HOH . I 5 HOH A 8 708 22 HOH HOH . I 5 HOH A 9 709 23 HOH HOH . I 5 HOH A 10 710 24 HOH HOH . I 5 HOH A 11 711 31 HOH HOH . I 5 HOH A 12 712 32 HOH HOH . I 5 HOH A 13 713 33 HOH HOH . I 5 HOH A 14 714 40 HOH HOH . I 5 HOH A 15 715 41 HOH HOH . I 5 HOH A 16 716 42 HOH HOH . I 5 HOH A 17 717 43 HOH HOH . I 5 HOH A 18 718 44 HOH HOH . I 5 HOH A 19 719 50 HOH HOH . I 5 HOH A 20 720 54 HOH HOH . I 5 HOH A 21 721 55 HOH HOH . I 5 HOH A 22 722 58 HOH HOH . I 5 HOH A 23 723 59 HOH HOH . I 5 HOH A 24 724 61 HOH HOH . I 5 HOH A 25 725 63 HOH HOH . I 5 HOH A 26 726 64 HOH HOH . I 5 HOH A 27 727 67 HOH HOH . I 5 HOH A 28 728 68 HOH HOH . I 5 HOH A 29 729 70 HOH HOH . I 5 HOH A 30 730 71 HOH HOH . I 5 HOH A 31 731 72 HOH HOH . I 5 HOH A 32 732 77 HOH HOH . I 5 HOH A 33 733 78 HOH HOH . I 5 HOH A 34 734 79 HOH HOH . I 5 HOH A 35 735 82 HOH HOH . I 5 HOH A 36 736 85 HOH HOH . I 5 HOH A 37 737 86 HOH HOH . I 5 HOH A 38 738 94 HOH HOH . I 5 HOH A 39 739 96 HOH HOH . I 5 HOH A 40 740 100 HOH HOH . I 5 HOH A 41 741 104 HOH HOH . I 5 HOH A 42 742 105 HOH HOH . I 5 HOH A 43 743 106 HOH HOH . I 5 HOH A 44 744 107 HOH HOH . I 5 HOH A 45 745 108 HOH HOH . I 5 HOH A 46 746 109 HOH HOH . I 5 HOH A 47 747 65 HOH HOH . J 5 HOH B 1 701 4 HOH HOH . J 5 HOH B 2 702 5 HOH HOH . J 5 HOH B 3 703 7 HOH HOH . J 5 HOH B 4 704 8 HOH HOH . J 5 HOH B 5 705 9 HOH HOH . J 5 HOH B 6 706 11 HOH HOH . J 5 HOH B 7 707 12 HOH HOH . J 5 HOH B 8 708 13 HOH HOH . J 5 HOH B 9 709 19 HOH HOH . J 5 HOH B 10 710 25 HOH HOH . J 5 HOH B 11 711 26 HOH HOH . J 5 HOH B 12 712 27 HOH HOH . J 5 HOH B 13 713 34 HOH HOH . J 5 HOH B 14 714 35 HOH HOH . J 5 HOH B 15 715 36 HOH HOH . J 5 HOH B 16 716 37 HOH HOH . J 5 HOH B 17 717 38 HOH HOH . J 5 HOH B 18 718 39 HOH HOH . J 5 HOH B 19 719 45 HOH HOH . J 5 HOH B 20 720 46 HOH HOH . J 5 HOH B 21 721 47 HOH HOH . J 5 HOH B 22 722 51 HOH HOH . J 5 HOH B 23 723 56 HOH HOH . J 5 HOH B 24 724 57 HOH HOH . J 5 HOH B 25 725 60 HOH HOH . J 5 HOH B 26 726 66 HOH HOH . J 5 HOH B 27 727 73 HOH HOH . J 5 HOH B 28 728 74 HOH HOH . J 5 HOH B 29 729 75 HOH HOH . J 5 HOH B 30 730 76 HOH HOH . J 5 HOH B 31 731 80 HOH HOH . J 5 HOH B 32 732 84 HOH HOH . J 5 HOH B 33 733 87 HOH HOH . J 5 HOH B 34 734 89 HOH HOH . J 5 HOH B 35 735 90 HOH HOH . J 5 HOH B 36 736 91 HOH HOH . J 5 HOH B 37 737 92 HOH HOH . J 5 HOH B 38 738 93 HOH HOH . J 5 HOH B 39 739 95 HOH HOH . J 5 HOH B 40 740 97 HOH HOH . J 5 HOH B 41 741 99 HOH HOH . J 5 HOH B 42 742 101 HOH HOH . J 5 HOH B 43 743 103 HOH HOH . J 5 HOH B 44 744 110 HOH HOH . K 5 HOH C 1 901 14 HOH HOH . K 5 HOH C 2 902 20 HOH HOH . K 5 HOH C 3 903 28 HOH HOH . K 5 HOH C 4 904 29 HOH HOH . K 5 HOH C 5 905 52 HOH HOH . K 5 HOH C 6 906 81 HOH HOH . K 5 HOH C 7 907 98 HOH HOH . L 5 HOH D 1 901 3 HOH HOH . L 5 HOH D 2 902 6 HOH HOH . L 5 HOH D 3 903 10 HOH HOH . L 5 HOH D 4 904 30 HOH HOH . L 5 HOH D 5 905 48 HOH HOH . L 5 HOH D 6 906 49 HOH HOH . L 5 HOH D 7 907 53 HOH HOH . L 5 HOH D 8 908 62 HOH HOH . L 5 HOH D 9 909 69 HOH HOH . L 5 HOH D 10 910 83 HOH HOH . L 5 HOH D 11 911 88 HOH HOH . L 5 HOH D 12 912 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 APR . . . F 4 97.276 56.086 65.904 1 66.45 ? N1 APR 602 A 1 HETATM 2 C C2 APR . . . F 4 98.334 56.593 66.573 1 70.75 ? C2 APR 602 A 1 HETATM 3 N N3 APR . . . F 4 98.481 57.913 66.695 1 66.46 ? N3 APR 602 A 1 HETATM 4 C C4 APR . . . F 4 97.592 58.772 66.163 1 67.97 ? C4 APR 602 A 1 HETATM 5 C C5 APR . . . F 4 96.491 58.271 65.466 1 62.4 ? C5 APR 602 A 1 HETATM 6 C C6 APR . . . F 4 96.351 56.89 65.349 1 64.93 ? C6 APR 602 A 1 HETATM 7 N N6 APR . . . F 4 95.247 56.332 64.65 1 69.05 ? N6 APR 602 A 1 HETATM 8 N N7 APR . . . F 4 95.787 59.346 65.055 1 66.19 ? N7 APR 602 A 1 HETATM 9 C C8 APR . . . F 4 96.413 60.461 65.47 1 67.24 ? C8 APR 602 A 1 HETATM 10 N N9 APR . . . F 4 97.518 60.112 66.134 1 58.87 ? N9 APR 602 A 1 HETATM 11 C C1' APR . . . F 4 98.513 60.962 66.822 1 62.6 ? C1' APR 602 A 1 HETATM 12 C C2' APR . . . F 4 99.003 62.152 66.132 1 66.95 ? C2' APR 602 A 1 HETATM 13 O O2' APR . . . F 4 100.2 61.829 65.478 1 70.4 ? O2' APR 602 A 1 HETATM 14 C C3' APR . . . F 4 99.284 63.061 67.174 1 75.14 ? C3' APR 602 A 1 HETATM 15 O O3' APR . . . F 4 100.657 63.056 67.52 1 61.15 ? O3' APR 602 A 1 HETATM 16 O O4' APR . . . F 4 97.942 61.418 68.022 1 60.14 ? O4' APR 602 A 1 HETATM 17 C C4' APR . . . F 4 98.469 62.655 68.319 1 62.02 ? C4' APR 602 A 1 HETATM 18 C C5' APR . . . F 4 97.338 63.609 68.459 1 72.83 ? C5' APR 602 A 1 HETATM 19 O O5' APR . . . F 4 97.005 64.12 69.712 1 69.2 ? O5' APR 602 A 1 HETATM 20 P PA APR . . . F 4 96.538 65.627 69.789 1 55.46 ? PA APR 602 A 1 HETATM 21 O O1A APR . . . F 4 95.935 66.036 68.467 1 60.99 ? O1A APR 602 A 1 HETATM 22 O O2A APR . . . F 4 97.693 66.477 70.062 1 49.84 ? O2A APR 602 A 1 HETATM 23 O O3A APR . . . F 4 95.508 65.759 70.92 1 65.7 ? O3A APR 602 A 1 HETATM 24 P PB APR . . . F 4 95.736 65.088 72.343 1 49.06 ? PB APR 602 A 1 HETATM 25 O O1B APR . . . F 4 97.203 64.992 72.666 1 43.78 ? O1B APR 602 A 1 HETATM 26 O O2B APR . . . F 4 95.083 63.733 72.363 1 56.74 ? O2B APR 602 A 1 HETATM 27 O O5D APR . . . F 4 95.005 65.946 73.444 1 57.02 ? O5D APR 602 A 1 HETATM 28 C C5D APR . . . F 4 95.4 67.253 73.77 1 50.62 ? C5D APR 602 A 1 HETATM 29 O O4D APR . . . F 4 94.449 69.409 73.868 1 65.58 ? O4D APR 602 A 1 HETATM 30 O O1D APR . . . F 4 92.983 71.016 73.199 1 45.04 ? O1D APR 602 A 1 HETATM 31 C C1D APR . . . F 4 93.194 69.973 74.072 1 57.21 ? C1D APR 602 A 1 HETATM 32 O O2D APR . . . F 4 91.21 68.95 74.772 1 65.82 ? O2D APR 602 A 1 HETATM 33 C C2D APR . . . F 4 92.268 68.896 73.808 1 54.48 ? C2D APR 602 A 1 HETATM 34 O O3D APR . . . F 4 92.467 66.853 74.976 1 60.64 ? O3D APR 602 A 1 HETATM 35 C C3D APR . . . F 4 93.029 67.695 73.964 1 51.8 ? C3D APR 602 A 1 HETATM 36 C C4D APR . . . F 4 94.345 68.132 74.38 1 49.7 ? C4D APR 602 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #