data_4IAW
#
_model_server_result.job_id            XVKS-8Z3txTMstwFle2gvg 
_model_server_result.datetime_utc      '2024-10-18 08:29:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4iaw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":202}' 
#
_entry.id    4IAW 
#
_exptl.entry_id    4IAW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.906 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'YTTRIUM (III) ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4IAW 
_cell.length_a            113.26 
_cell.length_b            113.26 
_cell.length_c            119.98 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4IAW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,J 1 1 
B,F,G,K 2 1 
C,H,I,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 76 A CYS 76 1_555 A SG CYS 175 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
disulf ? disulf2 B SG CYS 76 B CYS 76 1_555 B SG CYS 175 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf3 C SG CYS 76 C CYS 76 1_555 C SG CYS 175 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc1 D O4 LIZ . A LIZ 201 1_555 E Y YT3 . A YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc2 D O10 LIZ . A LIZ 201 1_555 E Y YT3 . A YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc3 D O6 LIZ . A LIZ 201 1_555 E Y YT3 . A YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc4 D O8 LIZ . A LIZ 201 1_555 E Y YT3 . A YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc5 D O2 LIZ . A LIZ 201 1_555 E Y YT3 . A YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? 
metalc ? metalc6 D N3 LIZ . A LIZ 201 1_555 E Y YT3 . A YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? 
metalc ? metalc7 D N1 LIZ . A LIZ 201 1_555 E Y YT3 . A YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
metalc ? metalc8 D N2 LIZ . A LIZ 201 1_555 E Y YT3 . A YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? 
metalc ? metalc9 E Y YT3 . A YT3 202 1_555 J O HOH . A HOH 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc10 F O8 LIZ . B LIZ 201 1_555 G Y YT3 . B YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc11 F O6 LIZ . B LIZ 201 1_555 G Y YT3 . B YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc12 F O4 LIZ . B LIZ 201 1_555 G Y YT3 . B YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc13 F O2 LIZ . B LIZ 201 1_555 G Y YT3 . B YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc14 F O10 LIZ . B LIZ 201 1_555 G Y YT3 . B YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
metalc ? metalc15 F N2 LIZ . B LIZ 201 1_555 G Y YT3 . B YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc16 F N3 LIZ . B LIZ 201 1_555 G Y YT3 . B YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc17 F N1 LIZ . B LIZ 201 1_555 G Y YT3 . B YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? 
metalc ? metalc18 G Y YT3 . B YT3 202 1_555 K O HOH . B HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc19 H O8 LIZ . C LIZ 201 1_555 I Y YT3 . C YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc20 H O10 LIZ . C LIZ 201 1_555 I Y YT3 . C YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc21 H O6 LIZ . C LIZ 201 1_555 I Y YT3 . C YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc22 H O2 LIZ . C LIZ 201 1_555 I Y YT3 . C YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc23 H N1 LIZ . C LIZ 201 1_555 I Y YT3 . C YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? 
metalc ? metalc24 H N2 LIZ . C LIZ 201 1_555 I Y YT3 . C YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc25 H O4 LIZ . C LIZ 201 1_555 I Y YT3 . C YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? 
metalc ? metalc26 H N3 LIZ . C LIZ 201 1_555 I Y YT3 . C YT3 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? 
#
_chem_comp.formula           'Y 3' 
_chem_comp.formula_weight    88.906 
_chem_comp.id                YT3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'YTTRIUM (III) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4IAW 
_atom_sites.fract_transf_matrix[1][1]    0.008829 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008829 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008335 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 LIZ A 1 201 189 LIZ LIG . 
E 3 YT3 A 1 202 190 YT3 YT3 . 
F 2 LIZ B 1 201 189 LIZ LIG . 
G 3 YT3 B 1 202 190 YT3 YT3 . 
H 2 LIZ C 1 201 189 LIZ LIG . 
I 3 YT3 C 1 202 190 YT3 YT3 . 
J 4 HOH A 1 301 3 HOH HOH . 
J 4 HOH A 2 302 4 HOH HOH . 
J 4 HOH A 3 303 5 HOH HOH . 
J 4 HOH A 4 304 6 HOH HOH . 
J 4 HOH A 5 305 7 HOH HOH . 
J 4 HOH A 6 306 8 HOH HOH . 
J 4 HOH A 7 307 9 HOH HOH . 
J 4 HOH A 8 308 11 HOH HOH . 
J 4 HOH A 9 309 12 HOH HOH . 
J 4 HOH A 10 310 13 HOH HOH . 
J 4 HOH A 11 311 15 HOH HOH . 
J 4 HOH A 12 312 17 HOH HOH . 
J 4 HOH A 13 313 18 HOH HOH . 
J 4 HOH A 14 314 20 HOH HOH . 
J 4 HOH A 15 315 21 HOH HOH . 
J 4 HOH A 16 316 22 HOH HOH . 
J 4 HOH A 17 317 26 HOH HOH . 
J 4 HOH A 18 318 29 HOH HOH . 
J 4 HOH A 19 319 31 HOH HOH . 
J 4 HOH A 20 320 32 HOH HOH . 
J 4 HOH A 21 321 34 HOH HOH . 
J 4 HOH A 22 322 37 HOH HOH . 
J 4 HOH A 23 323 38 HOH HOH . 
J 4 HOH A 24 324 39 HOH HOH . 
J 4 HOH A 25 325 40 HOH HOH . 
J 4 HOH A 26 326 43 HOH HOH . 
J 4 HOH A 27 327 45 HOH HOH . 
J 4 HOH A 28 328 48 HOH HOH . 
J 4 HOH A 29 329 49 HOH HOH . 
J 4 HOH A 30 330 51 HOH HOH . 
J 4 HOH A 31 331 54 HOH HOH . 
J 4 HOH A 32 332 55 HOH HOH . 
J 4 HOH A 33 333 56 HOH HOH . 
J 4 HOH A 34 334 59 HOH HOH . 
J 4 HOH A 35 335 61 HOH HOH . 
J 4 HOH A 36 336 62 HOH HOH . 
J 4 HOH A 37 337 63 HOH HOH . 
J 4 HOH A 38 338 65 HOH HOH . 
J 4 HOH A 39 339 66 HOH HOH . 
J 4 HOH A 40 340 67 HOH HOH . 
J 4 HOH A 41 341 69 HOH HOH . 
J 4 HOH A 42 342 71 HOH HOH . 
J 4 HOH A 43 343 73 HOH HOH . 
J 4 HOH A 44 344 74 HOH HOH . 
J 4 HOH A 45 345 75 HOH HOH . 
J 4 HOH A 46 346 77 HOH HOH . 
J 4 HOH A 47 347 81 HOH HOH . 
J 4 HOH A 48 348 82 HOH HOH . 
J 4 HOH A 49 349 83 HOH HOH . 
J 4 HOH A 50 350 84 HOH HOH . 
J 4 HOH A 51 351 85 HOH HOH . 
J 4 HOH A 52 352 87 HOH HOH . 
J 4 HOH A 53 353 89 HOH HOH . 
J 4 HOH A 54 354 91 HOH HOH . 
J 4 HOH A 55 355 93 HOH HOH . 
J 4 HOH A 56 356 94 HOH HOH . 
J 4 HOH A 57 357 95 HOH HOH . 
J 4 HOH A 58 358 96 HOH HOH . 
J 4 HOH A 59 359 97 HOH HOH . 
J 4 HOH A 60 360 98 HOH HOH . 
J 4 HOH A 61 361 99 HOH HOH . 
J 4 HOH A 62 362 100 HOH HOH . 
J 4 HOH A 63 363 102 HOH HOH . 
J 4 HOH A 64 364 103 HOH HOH . 
J 4 HOH A 65 365 104 HOH HOH . 
J 4 HOH A 66 366 105 HOH HOH . 
J 4 HOH A 67 367 106 HOH HOH . 
J 4 HOH A 68 368 107 HOH HOH . 
J 4 HOH A 69 369 108 HOH HOH . 
J 4 HOH A 70 370 109 HOH HOH . 
J 4 HOH A 71 371 111 HOH HOH . 
J 4 HOH A 72 372 112 HOH HOH . 
J 4 HOH A 73 373 113 HOH HOH . 
J 4 HOH A 74 374 114 HOH HOH . 
J 4 HOH A 75 375 116 HOH HOH . 
J 4 HOH A 76 376 118 HOH HOH . 
J 4 HOH A 77 377 122 HOH HOH . 
J 4 HOH A 78 378 128 HOH HOH . 
J 4 HOH A 79 379 129 HOH HOH . 
J 4 HOH A 80 380 130 HOH HOH . 
J 4 HOH A 81 381 132 HOH HOH . 
J 4 HOH A 82 382 133 HOH HOH . 
J 4 HOH A 83 383 134 HOH HOH . 
J 4 HOH A 84 384 135 HOH HOH . 
J 4 HOH A 85 385 137 HOH HOH . 
J 4 HOH A 86 386 138 HOH HOH . 
J 4 HOH A 87 387 140 HOH HOH . 
J 4 HOH A 88 388 141 HOH HOH . 
J 4 HOH A 89 389 142 HOH HOH . 
J 4 HOH A 90 390 146 HOH HOH . 
J 4 HOH A 91 391 149 HOH HOH . 
J 4 HOH A 92 392 151 HOH HOH . 
J 4 HOH A 93 393 152 HOH HOH . 
K 4 HOH B 1 301 1 HOH HOH . 
K 4 HOH B 2 302 2 HOH HOH . 
K 4 HOH B 3 303 10 HOH HOH . 
K 4 HOH B 4 304 14 HOH HOH . 
K 4 HOH B 5 305 16 HOH HOH . 
K 4 HOH B 6 306 19 HOH HOH . 
K 4 HOH B 7 307 23 HOH HOH . 
K 4 HOH B 8 308 24 HOH HOH . 
K 4 HOH B 9 309 25 HOH HOH . 
K 4 HOH B 10 310 27 HOH HOH . 
K 4 HOH B 11 311 28 HOH HOH . 
K 4 HOH B 12 312 30 HOH HOH . 
K 4 HOH B 13 313 33 HOH HOH . 
K 4 HOH B 14 314 35 HOH HOH . 
K 4 HOH B 15 315 36 HOH HOH . 
K 4 HOH B 16 316 41 HOH HOH . 
K 4 HOH B 17 317 42 HOH HOH . 
K 4 HOH B 18 318 44 HOH HOH . 
K 4 HOH B 19 319 46 HOH HOH . 
K 4 HOH B 20 320 47 HOH HOH . 
K 4 HOH B 21 321 50 HOH HOH . 
K 4 HOH B 22 322 52 HOH HOH . 
K 4 HOH B 23 323 53 HOH HOH . 
K 4 HOH B 24 324 57 HOH HOH . 
K 4 HOH B 25 325 58 HOH HOH . 
K 4 HOH B 26 326 60 HOH HOH . 
K 4 HOH B 27 327 64 HOH HOH . 
K 4 HOH B 28 328 68 HOH HOH . 
K 4 HOH B 29 329 76 HOH HOH . 
K 4 HOH B 30 330 78 HOH HOH . 
K 4 HOH B 31 331 79 HOH HOH . 
K 4 HOH B 32 332 80 HOH HOH . 
K 4 HOH B 33 333 86 HOH HOH . 
K 4 HOH B 34 334 88 HOH HOH . 
K 4 HOH B 35 335 90 HOH HOH . 
K 4 HOH B 36 336 92 HOH HOH . 
K 4 HOH B 37 337 101 HOH HOH . 
K 4 HOH B 38 338 110 HOH HOH . 
K 4 HOH B 39 339 115 HOH HOH . 
K 4 HOH B 40 340 120 HOH HOH . 
K 4 HOH B 41 341 123 HOH HOH . 
K 4 HOH B 42 342 124 HOH HOH . 
K 4 HOH B 43 343 125 HOH HOH . 
K 4 HOH B 44 344 126 HOH HOH . 
K 4 HOH B 45 345 127 HOH HOH . 
K 4 HOH B 46 346 131 HOH HOH . 
K 4 HOH B 47 347 136 HOH HOH . 
K 4 HOH B 48 348 139 HOH HOH . 
K 4 HOH B 49 349 143 HOH HOH . 
K 4 HOH B 50 350 144 HOH HOH . 
K 4 HOH B 51 351 145 HOH HOH . 
K 4 HOH B 52 352 147 HOH HOH . 
K 4 HOH B 53 353 148 HOH HOH . 
K 4 HOH B 54 354 150 HOH HOH . 
L 4 HOH C 1 301 72 HOH HOH . 
L 4 HOH C 2 302 117 HOH HOH . 
L 4 HOH C 3 303 119 HOH HOH . 
L 4 HOH C 4 304 121 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           Y 
_atom_site.label_atom_id         Y 
_atom_site.label_comp_id         YT3 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               9.171 
_atom_site.Cartn_y               -15.355 
_atom_site.Cartn_z               -10.824 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        14.98 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          Y 
_atom_site.auth_comp_id          YT3 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#