data_4IB4 # _model_server_result.job_id '_rdiVcv0M2i8c3O0659dNg' _model_server_result.datetime_utc '2024-11-21 14:05:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ib4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 4IB4 # _exptl.entry_id 4IB4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 581.661 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Ergotamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IB4 _cell.length_a 60.571 _cell.length_b 119.75 _cell.length_c 170.607 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IB4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 128 1_555 A SG CYS 182 A CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 366 A CYS 350 1_555 A SG CYS 369 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A SG CYS 413 A CYS 397 1_555 C C1 PLM . A PLM 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.658 ? # _chem_comp.formula 'C33 H35 N5 O5' _chem_comp.formula_weight 581.661 _chem_comp.id ERM _chem_comp.mon_nstd_flag . _chem_comp.name Ergotamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C22 ERM sing 160 n n C23 C24 ERM sing 161 n n C26 C17 ERM sing 162 n n C22 C21 ERM sing 163 n n O2 C17 ERM sing 164 n n O2 C25 ERM sing 165 n n C24 C25 ERM sing 166 n n C24 N5 ERM sing 167 n n C21 N5 ERM sing 168 n n C17 N3 ERM sing 169 n n C17 C18 ERM sing 170 n n C25 O5 ERM sing 171 n n C25 N4 ERM sing 172 n n N3 C16 ERM sing 173 n n N5 C20 ERM sing 174 n n C5 N2 ERM sing 175 n n C5 C6 ERM sing 176 n n C15 N2 ERM sing 177 n n C18 N4 ERM sing 178 n n C18 O3 ERM doub 179 n n C16 C6 ERM sing 180 n n C16 O1 ERM doub 181 n n N4 C19 ERM sing 182 n n N2 C4 ERM sing 183 n n C6 C7 ERM sing 184 n n C20 O4 ERM doub 185 n n C20 C19 ERM sing 186 n n C19 C27 ERM sing 187 n n C7 C8 ERM doub 188 n n C4 C3 ERM sing 189 n n C4 C8 ERM sing 190 n n C3 C2 ERM sing 191 n n C8 C9 ERM sing 192 n n C27 C28 ERM sing 193 n n C2 C1 ERM doub 194 n y C2 C14 ERM sing 195 n y C28 C29 ERM doub 196 n y C28 C33 ERM sing 197 n y C9 C14 ERM doub 198 n y C9 C10 ERM sing 199 n y C29 C30 ERM sing 200 n y C33 C32 ERM doub 201 n y C1 N1 ERM sing 202 n y C14 C13 ERM sing 203 n y C30 C31 ERM doub 204 n y C10 C11 ERM doub 205 n y C32 C31 ERM sing 206 n y N1 C13 ERM sing 207 n y C13 C12 ERM doub 208 n y C11 C12 ERM sing 209 n y C1 H1 ERM sing 210 n n N1 H2 ERM sing 211 n n C10 H3 ERM sing 212 n n C11 H4 ERM sing 213 n n C12 H5 ERM sing 214 n n C15 H6 ERM sing 215 n n C15 H7 ERM sing 216 n n C15 H8 ERM sing 217 n n C19 H9 ERM sing 218 n n C21 H11 ERM sing 219 n n C21 H12 ERM sing 220 n n C22 H13 ERM sing 221 n n C22 H14 ERM sing 222 n n C23 H15 ERM sing 223 n n C23 H16 ERM sing 224 n n C24 H17 ERM sing 225 n n C26 H18 ERM sing 226 n n C26 H19 ERM sing 227 n n C26 H20 ERM sing 228 n n C27 H21 ERM sing 229 n n C27 H22 ERM sing 230 n n C29 H23 ERM sing 231 n n C3 H24 ERM sing 232 n n C3 H25 ERM sing 233 n n N3 H26 ERM sing 234 n n C30 H27 ERM sing 235 n n C31 H28 ERM sing 236 n n C32 H29 ERM sing 237 n n C33 H30 ERM sing 238 n n C4 H31 ERM sing 239 n n C5 H32 ERM sing 240 n n C5 H33 ERM sing 241 n n O5 H34 ERM sing 242 n n C6 H35 ERM sing 243 n n C7 H36 ERM sing 244 n n # _atom_sites.entry_id 4IB4 _atom_sites.fract_transf_matrix[1][1] 0.01651 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008351 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005861 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ERM A 1 2001 2001 ERM EGM . C 3 PLM A 1 2002 2002 PLM PLM . D 4 CLR A 1 2003 2003 CLR CLR . E 5 OLC A 1 2004 2004 OLC OLC . F 6 OLB A 1 2005 2005 OLB OLB . G 6 OLB A 1 2006 2006 OLB OLB . H 6 OLB A 1 2007 2007 OLB OLB . I 7 OLA A 1 2008 2008 OLA OLA . J 7 OLA A 1 2009 2009 OLA OLA . K 8 PEG A 1 2010 2010 PEG PEG . L 8 PEG A 1 2011 2011 PEG PEG . M 9 HOH A 1 2012 2012 HOH HOH . M 9 HOH A 2 2013 2013 HOH HOH . M 9 HOH A 3 2014 2014 HOH HOH . M 9 HOH A 4 2015 2015 HOH HOH . M 9 HOH A 5 2016 2016 HOH HOH . M 9 HOH A 6 2017 2017 HOH HOH . M 9 HOH A 7 2018 2018 HOH HOH . M 9 HOH A 8 2019 2019 HOH HOH . M 9 HOH A 9 2020 2020 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ERM . . . B 2 23.443 14.527 4.822 1 54.3 ? C1 ERM 2001 A 1 HETATM 2 N N1 ERM . . . B 2 24.198 13.556 5.387 1 55.27 ? N1 ERM 2001 A 1 HETATM 3 O O1 ERM . . . B 2 21.825 18.775 11.405 1 55.79 ? O1 ERM 2001 A 1 HETATM 4 C C10 ERM . . . B 2 23.821 14.673 9.347 1 54.17 ? C10 ERM 2001 A 1 HETATM 5 C C11 ERM . . . B 2 24.633 13.531 9.134 1 54.11 ? C11 ERM 2001 A 1 HETATM 6 C C12 ERM . . . B 2 24.845 13.05 7.801 1 53.56 ? C12 ERM 2001 A 1 HETATM 7 C C13 ERM . . . B 2 24.248 13.712 6.779 1 55.14 ? C13 ERM 2001 A 1 HETATM 8 C C14 ERM . . . B 2 23.433 14.833 6.998 1 55.54 ? C14 ERM 2001 A 1 HETATM 9 C C15 ERM . . . B 2 21.48 19.656 6.214 1 54.58 ? C15 ERM 2001 A 1 HETATM 10 C C16 ERM . . . B 2 20.714 18.621 10.929 1 56.28 ? C16 ERM 2001 A 1 HETATM 11 C C17 ERM . . . B 2 19.482 19.617 12.891 1 58.3 ? C17 ERM 2001 A 1 HETATM 12 C C18 ERM . . . B 2 20.316 18.935 13.956 1 58.34 ? C18 ERM 2001 A 1 HETATM 13 C C19 ERM . . . B 2 22.346 19.519 15.212 1 60.25 ? C19 ERM 2001 A 1 HETATM 14 N N2 ERM . . . B 2 21.2 18.505 7.119 1 53.99 ? N2 ERM 2001 A 1 HETATM 15 C C2 ERM . . . B 2 22.941 15.353 5.782 1 54.63 ? C2 ERM 2001 A 1 HETATM 16 O O2 ERM . . . B 2 20.068 20.921 12.81 1 60.03 ? O2 ERM 2001 A 1 HETATM 17 C C20 ERM . . . B 2 22.747 20.825 15.923 1 61.6 ? C20 ERM 2001 A 1 HETATM 18 C C21 ERM . . . B 2 22.511 23.314 16.11 1 60.03 ? C21 ERM 2001 A 1 HETATM 19 C C22 ERM . . . B 2 21.807 24.351 15.264 1 59.55 ? C22 ERM 2001 A 1 HETATM 20 C C23 ERM . . . B 2 21.484 23.632 13.93 1 60.2 ? C23 ERM 2001 A 1 HETATM 21 C C24 ERM . . . B 2 21.254 22.226 14.501 1 61.08 ? C24 ERM 2001 A 1 HETATM 22 C C25 ERM . . . B 2 21.302 21.063 13.519 1 60.41 ? C25 ERM 2001 A 1 HETATM 23 C C26 ERM . . . B 2 17.997 19.623 13.245 1 56.32 ? C26 ERM 2001 A 1 HETATM 24 C C27 ERM . . . B 2 23.515 18.804 14.566 1 60.01 ? C27 ERM 2001 A 1 HETATM 25 C C28 ERM . . . B 2 24.425 18.071 15.538 1 60.75 ? C28 ERM 2001 A 1 HETATM 26 C C29 ERM . . . B 2 23.938 17.027 16.345 1 61.76 ? C29 ERM 2001 A 1 HETATM 27 C C3 ERM . . . B 2 22.027 16.545 5.777 1 53.77 ? C3 ERM 2001 A 1 HETATM 28 N N3 ERM . . . B 2 19.566 18.969 11.569 1 57.16 ? N3 ERM 2001 A 1 HETATM 29 O O3 ERM . . . B 2 20.125 17.834 14.423 1 58.48 ? O3 ERM 2001 A 1 HETATM 30 C C30 ERM . . . B 2 24.787 16.353 17.239 1 61.67 ? C30 ERM 2001 A 1 HETATM 31 C C31 ERM . . . B 2 26.147 16.703 17.305 1 61.35 ? C31 ERM 2001 A 1 HETATM 32 C C32 ERM . . . B 2 26.649 17.724 16.483 1 60.93 ? C32 ERM 2001 A 1 HETATM 33 C C33 ERM . . . B 2 25.791 18.4 15.595 1 60.95 ? C33 ERM 2001 A 1 HETATM 34 C C4 ERM . . . B 2 22.257 17.419 7.063 1 53.89 ? C4 ERM 2001 A 1 HETATM 35 N N4 ERM . . . B 2 21.31 19.79 14.237 1 59.56 ? N4 ERM 2001 A 1 HETATM 36 O O4 ERM . . . B 2 23.568 20.788 16.855 1 63.04 ? O4 ERM 2001 A 1 HETATM 37 C C5 ERM . . . B 2 20.91 19.087 8.477 1 54.03 ? C5 ERM 2001 A 1 HETATM 38 N N5 ERM . . . B 2 22.225 21.994 15.554 1 61.05 ? N5 ERM 2001 A 1 HETATM 39 O O5 ERM . . . B 2 22.378 21.154 12.635 1 60.18 ? O5 ERM 2001 A 1 HETATM 40 C C6 ERM . . . B 2 20.596 18.011 9.5 1 55.14 ? C6 ERM 2001 A 1 HETATM 41 C C7 ERM . . . B 2 21.432 16.761 9.339 1 55.1 ? C7 ERM 2001 A 1 HETATM 42 C C8 ERM . . . B 2 22.307 16.589 8.351 1 54.79 ? C8 ERM 2001 A 1 HETATM 43 C C9 ERM . . . B 2 23.206 15.363 8.294 1 54.83 ? C9 ERM 2001 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #