data_4IB4 # _model_server_result.job_id Uu9KjPSk5URUEfSpPEsTow _model_server_result.datetime_utc '2024-11-21 13:46:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ib4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2004}' # _entry.id 4IB4 # _exptl.entry_id 4IB4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IB4 _cell.length_a 60.571 _cell.length_b 119.75 _cell.length_c 170.607 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IB4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 128 1_555 A SG CYS 182 A CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 366 A CYS 350 1_555 A SG CYS 369 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A SG CYS 413 A CYS 397 1_555 C C1 PLM . A PLM 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.658 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 516 n n C10 C9 OLC doub 517 n n C10 C11 OLC sing 518 n n C9 C8 OLC sing 519 n n C17 C16 OLC sing 520 z n C11 C12 OLC sing 521 n n C8 C7 OLC sing 522 n n C24 C22 OLC sing 523 n n C24 O25 OLC sing 524 n n C16 C15 OLC sing 525 n n C12 C13 OLC sing 526 n n C7 C6 OLC sing 527 n n C15 C14 OLC sing 528 n n C13 C14 OLC sing 529 n n C6 C5 OLC sing 530 n n C5 C4 OLC sing 531 n n C4 C3 OLC sing 532 n n C3 C2 OLC sing 533 n n C2 C1 OLC sing 534 n n C21 C22 OLC sing 535 n n C21 O20 OLC sing 536 n n C1 O19 OLC doub 537 n n C1 O20 OLC sing 538 n n C22 O23 OLC sing 539 n n C18 H18 OLC sing 540 n n C18 H18A OLC sing 541 n n C18 H18B OLC sing 542 n n C10 H10 OLC sing 543 n n C9 H9 OLC sing 544 n n C17 H17 OLC sing 545 n n C17 H17A OLC sing 546 n n C11 H11 OLC sing 547 n n C11 H11A OLC sing 548 n n C8 H8 OLC sing 549 n n C8 H8A OLC sing 550 n n C24 H24 OLC sing 551 n n C24 H24A OLC sing 552 n n C16 H16 OLC sing 553 n n C16 H16A OLC sing 554 n n C12 H12 OLC sing 555 n n C12 H12A OLC sing 556 n n C7 H7 OLC sing 557 n n C7 H7A OLC sing 558 n n C15 H15 OLC sing 559 n n C15 H15A OLC sing 560 n n C13 H13 OLC sing 561 n n C13 H13A OLC sing 562 n n C6 H6 OLC sing 563 n n C6 H6A OLC sing 564 n n C14 H14 OLC sing 565 n n C14 H14A OLC sing 566 n n C5 H5 OLC sing 567 n n C5 H5A OLC sing 568 n n C4 H4 OLC sing 569 n n C4 H4A OLC sing 570 n n C3 H3 OLC sing 571 n n C3 H3A OLC sing 572 n n C2 H2 OLC sing 573 n n C2 H2A OLC sing 574 n n C21 H21 OLC sing 575 n n C21 H21A OLC sing 576 n n C22 H22 OLC sing 577 n n O25 HO25 OLC sing 578 n n O23 HO23 OLC sing 579 n n # _atom_sites.entry_id 4IB4 _atom_sites.fract_transf_matrix[1][1] 0.01651 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008351 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005861 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ERM A 1 2001 2001 ERM EGM . C 3 PLM A 1 2002 2002 PLM PLM . D 4 CLR A 1 2003 2003 CLR CLR . E 5 OLC A 1 2004 2004 OLC OLC . F 6 OLB A 1 2005 2005 OLB OLB . G 6 OLB A 1 2006 2006 OLB OLB . H 6 OLB A 1 2007 2007 OLB OLB . I 7 OLA A 1 2008 2008 OLA OLA . J 7 OLA A 1 2009 2009 OLA OLA . K 8 PEG A 1 2010 2010 PEG PEG . L 8 PEG A 1 2011 2011 PEG PEG . M 9 HOH A 1 2012 2012 HOH HOH . M 9 HOH A 2 2013 2013 HOH HOH . M 9 HOH A 3 2014 2014 HOH HOH . M 9 HOH A 4 2015 2015 HOH HOH . M 9 HOH A 5 2016 2016 HOH HOH . M 9 HOH A 6 2017 2017 HOH HOH . M 9 HOH A 7 2018 2018 HOH HOH . M 9 HOH A 8 2019 2019 HOH HOH . M 9 HOH A 9 2020 2020 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . E 5 41.401 18.821 -2.791 1 70.53 ? C10 OLC 2004 A 1 HETATM 2 C C9 OLC . . . E 5 42.25 18.634 -3.817 1 69.4 ? C9 OLC 2004 A 1 HETATM 3 C C11 OLC . . . E 5 40.055 19.51 -2.873 1 70.85 ? C11 OLC 2004 A 1 HETATM 4 C C8 OLC . . . E 5 42.026 19.078 -5.247 1 67.15 ? C8 OLC 2004 A 1 HETATM 5 C C24 OLC . . . E 5 34.969 13.631 -13.636 1 70.92 ? C24 OLC 2004 A 1 HETATM 6 C C12 OLC . . . E 5 39.302 19.713 -1.596 1 70.67 ? C12 OLC 2004 A 1 HETATM 7 C C7 OLC . . . E 5 41.507 18.076 -6.247 1 65.79 ? C7 OLC 2004 A 1 HETATM 8 C C6 OLC . . . E 5 40.355 18.513 -7.13 1 65.04 ? C6 OLC 2004 A 1 HETATM 9 C C5 OLC . . . E 5 38.975 17.979 -6.785 1 65.16 ? C5 OLC 2004 A 1 HETATM 10 C C4 OLC . . . E 5 37.789 18.495 -7.586 1 65.83 ? C4 OLC 2004 A 1 HETATM 11 C C3 OLC . . . E 5 36.571 17.583 -7.721 1 66.67 ? C3 OLC 2004 A 1 HETATM 12 C C2 OLC . . . E 5 35.758 17.702 -9.003 1 68.57 ? C2 OLC 2004 A 1 HETATM 13 C C21 OLC . . . E 5 35.472 14.868 -11.554 1 70.09 ? C21 OLC 2004 A 1 HETATM 14 C C1 OLC . . . E 5 35.239 16.434 -9.657 1 70.7 ? C1 OLC 2004 A 1 HETATM 15 C C22 OLC . . . E 5 35.818 14.711 -13.006 1 71.19 ? C22 OLC 2004 A 1 HETATM 16 O O19 OLC . . . E 5 34.208 15.965 -9.198 1 72.04 ? O19 OLC 2004 A 1 HETATM 17 O O25 OLC . . . E 5 34.702 13.671 -14.999 1 70.07 ? O25 OLC 2004 A 1 HETATM 18 O O23 OLC . . . E 5 35.676 15.918 -13.662 1 72.06 ? O23 OLC 2004 A 1 HETATM 19 O O20 OLC . . . E 5 35.617 16.146 -10.983 1 70.45 ? O20 OLC 2004 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #