data_4IB4
#
_model_server_result.job_id            8d0NtucsJme8vOVtQOYWTQ 
_model_server_result.datetime_utc      '2024-11-21 13:46:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ib4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":2005}' 
#
_entry.id    4IB4 
#
_exptl.entry_id    4IB4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4IB4 
_cell.length_a            60.571 
_cell.length_b            119.75 
_cell.length_c            170.607 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4IB4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
? 6 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 103 A CYS 128 1_555 A SG CYS 182 A CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 A SG CYS 366 A CYS 350 1_555 A SG CYS 369 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 A SG CYS 413 A CYS 397 1_555 C C1 PLM . A PLM 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.658 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLB 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O19 OLB doub 452 n n 
C1 O20 OLB sing 453 n n 
C2 C1 OLB sing 454 n n 
C3 C2 OLB sing 455 n n 
C4 C3 OLB sing 456 n n 
C5 C4 OLB sing 457 n n 
C5 C6 OLB sing 458 n n 
O20 C21 OLB sing 459 n n 
C21 C22 OLB sing 460 n n 
C22 C24 OLB sing 461 n n 
O23 C22 OLB sing 462 n n 
C24 O25 OLB sing 463 n n 
C6 C7 OLB sing 464 n n 
C7 C8 OLB sing 465 n n 
C8 C9 OLB sing 466 n n 
C9 C10 OLB doub 467 z n 
C10 C11 OLB sing 468 n n 
C2 H2 OLB sing 469 n n 
C2 H2A OLB sing 470 n n 
C3 H3 OLB sing 471 n n 
C3 H3A OLB sing 472 n n 
C4 H4 OLB sing 473 n n 
C4 H4A OLB sing 474 n n 
C5 H5 OLB sing 475 n n 
C5 H5A OLB sing 476 n n 
C21 H21 OLB sing 477 n n 
C21 H21A OLB sing 478 n n 
C22 H22 OLB sing 479 n n 
O23 HO23 OLB sing 480 n n 
C24 H24 OLB sing 481 n n 
C24 H24A OLB sing 482 n n 
O25 HO25 OLB sing 483 n n 
C6 H16 OLB sing 484 n n 
C6 H17 OLB sing 485 n n 
C7 H18 OLB sing 486 n n 
C7 H19 OLB sing 487 n n 
C8 H20 OLB sing 488 n n 
C8 H211 OLB sing 489 n n 
C9 H221 OLB sing 490 n n 
C10 H23 OLB sing 491 n n 
C11 H241 OLB sing 492 n n 
C11 H25 OLB sing 493 n n 
C11 C12 OLB sing 494 n n 
C12 H26 OLB sing 495 n n 
C12 C13 OLB sing 496 n n 
C12 H27 OLB sing 497 n n 
C13 C14 OLB sing 498 n n 
C13 H28 OLB sing 499 n n 
C13 H29 OLB sing 500 n n 
C14 H30 OLB sing 501 n n 
C14 H31 OLB sing 502 n n 
C14 C15 OLB sing 503 n n 
C15 C16 OLB sing 504 n n 
C15 H32 OLB sing 505 n n 
C15 H33 OLB sing 506 n n 
C16 H34 OLB sing 507 n n 
C16 H35 OLB sing 508 n n 
C16 C17 OLB sing 509 n n 
C17 C18 OLB sing 510 n n 
C17 H36 OLB sing 511 n n 
C17 H37 OLB sing 512 n n 
C18 H38 OLB sing 513 n n 
C18 H39 OLB sing 514 n n 
C18 H40 OLB sing 515 n n 
#
_atom_sites.entry_id                     4IB4 
_atom_sites.fract_transf_matrix[1][1]    0.01651 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008351 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005861 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ERM A 1 2001 2001 ERM EGM . 
C 3 PLM A 1 2002 2002 PLM PLM . 
D 4 CLR A 1 2003 2003 CLR CLR . 
E 5 OLC A 1 2004 2004 OLC OLC . 
F 6 OLB A 1 2005 2005 OLB OLB . 
G 6 OLB A 1 2006 2006 OLB OLB . 
H 6 OLB A 1 2007 2007 OLB OLB . 
I 7 OLA A 1 2008 2008 OLA OLA . 
J 7 OLA A 1 2009 2009 OLA OLA . 
K 8 PEG A 1 2010 2010 PEG PEG . 
L 8 PEG A 1 2011 2011 PEG PEG . 
M 9 HOH A 1 2012 2012 HOH HOH . 
M 9 HOH A 2 2013 2013 HOH HOH . 
M 9 HOH A 3 2014 2014 HOH HOH . 
M 9 HOH A 4 2015 2015 HOH HOH . 
M 9 HOH A 5 2016 2016 HOH HOH . 
M 9 HOH A 6 2017 2017 HOH HOH . 
M 9 HOH A 7 2018 2018 HOH HOH . 
M 9 HOH A 8 2019 2019 HOH HOH . 
M 9 HOH A 9 2020 2020 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OLB . . . F 6 11.059 2.716 13.97 1 94.59 ? C1 OLB 2005 A 1 
HETATM 2 C C2 OLB . . . F 6 12.064 2.969 12.856 1 94.7 ? C2 OLB 2005 A 1 
HETATM 3 C C3 OLB . . . F 6 11.776 2.408 11.466 1 94.33 ? C3 OLB 2005 A 1 
HETATM 4 C C4 OLB . . . F 6 12.166 3.256 10.256 1 93.84 ? C4 OLB 2005 A 1 
HETATM 5 C C5 OLB . . . F 6 11.122 3.496 9.176 1 93.18 ? C5 OLB 2005 A 1 
HETATM 6 O O19 OLB . . . F 6 9.863 2.858 13.75 1 95.44 ? O19 OLB 2005 A 1 
HETATM 7 O O20 OLB . . . F 6 11.499 2.342 15.248 1 93.41 ? O20 OLB 2005 A 1 
HETATM 8 C C21 OLB . . . F 6 11.381 3.238 16.324 1 92.74 ? C21 OLB 2005 A 1 
HETATM 9 C C22 OLB . . . F 6 11.917 2.821 17.661 1 92.72 ? C22 OLB 2005 A 1 
HETATM 10 O O23 OLB . . . F 6 13.141 3.409 17.89 1 92.58 ? O23 OLB 2005 A 1 
HETATM 11 C C24 OLB . . . F 6 10.954 3.233 18.739 1 93.27 ? C24 OLB 2005 A 1 
HETATM 12 O O25 OLB . . . F 6 10.984 4.547 19.176 1 93.55 ? O25 OLB 2005 A 1 
HETATM 13 C C6 OLB . . . F 6 11.482 4.452 8.049 1 92.52 ? C6 OLB 2005 A 1 
HETATM 14 C C7 OLB . . . F 6 10.903 4.178 6.677 1 92.07 ? C7 OLB 2005 A 1 
HETATM 15 C C8 OLB . . . F 6 11.866 3.951 5.539 1 91.72 ? C8 OLB 2005 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           15 
#