data_4IB9 # _model_server_result.job_id MTn5wGfWIG8H3TbRoQs_Rg _model_server_result.datetime_utc '2024-11-25 23:31:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ib9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4IB9 # _exptl.entry_id 4IB9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE-TRIMETHYLAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IB9 _cell.length_a 53.03 _cell.length_b 53.03 _cell.length_c 109.32 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IB9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1,2 A,B,C,D 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 36.44 3 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 66 A CYS 66 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 106 A CYS 106 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C15 H34 N 1' _chem_comp.formula_weight 228.437 _chem_comp.id CAT _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE-TRIMETHYLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CAT sing 70 n n C1 NE1 CAT sing 71 n n C1 H11 CAT sing 72 n n C1 H12 CAT sing 73 n n C2 C3 CAT sing 74 n n C2 H21 CAT sing 75 n n C2 H22 CAT sing 76 n n C3 C4 CAT sing 77 n n C3 H31 CAT sing 78 n n C3 H32 CAT sing 79 n n C4 C5 CAT sing 80 n n C4 H41 CAT sing 81 n n C4 H42 CAT sing 82 n n C5 C6 CAT sing 83 n n C5 H51 CAT sing 84 n n C5 H52 CAT sing 85 n n C6 C7 CAT sing 86 n n C6 H61 CAT sing 87 n n C6 H62 CAT sing 88 n n C7 C8 CAT sing 89 n n C7 H71 CAT sing 90 n n C7 H72 CAT sing 91 n n C8 C9 CAT sing 92 n n C8 H81 CAT sing 93 n n C8 H82 CAT sing 94 n n C9 C10 CAT sing 95 n n C9 H91 CAT sing 96 n n C9 H92 CAT sing 97 n n C10 C11 CAT sing 98 n n C10 H101 CAT sing 99 n n C10 H102 CAT sing 100 n n C11 C12 CAT sing 101 n n C11 H111 CAT sing 102 n n C11 H112 CAT sing 103 n n C12 H121 CAT sing 104 n n C12 H122 CAT sing 105 n n C12 H123 CAT sing 106 n n CA1 NE1 CAT sing 107 n n CA1 HA11 CAT sing 108 n n CA1 HA12 CAT sing 109 n n CA1 HA13 CAT sing 110 n n CB1 NE1 CAT sing 111 n n CB1 HB11 CAT sing 112 n n CB1 HB12 CAT sing 113 n n CB1 HB13 CAT sing 114 n n CC1 NE1 CAT sing 115 n n CC1 HC11 CAT sing 116 n n CC1 HC12 CAT sing 117 n n CC1 HC13 CAT sing 118 n n # _atom_sites.entry_id 4IB9 _atom_sites.fract_transf_matrix[1][1] 0.018857 _atom_sites.fract_transf_matrix[1][2] 0.010887 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021774 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CAT A 1 201 2343 CAT CAT . C 3 GOL A 1 202 3968 GOL GOL . D 4 HOH A 1 301 2 HOH HOH . D 4 HOH A 2 302 3 HOH HOH . D 4 HOH A 3 303 4 HOH HOH . D 4 HOH A 4 304 5 HOH HOH . D 4 HOH A 5 305 6 HOH HOH . D 4 HOH A 6 306 8 HOH HOH . D 4 HOH A 7 307 9 HOH HOH . D 4 HOH A 8 308 10 HOH HOH . D 4 HOH A 9 309 11 HOH HOH . D 4 HOH A 10 310 12 HOH HOH . D 4 HOH A 11 311 13 HOH HOH . D 4 HOH A 12 312 14 HOH HOH . D 4 HOH A 13 313 15 HOH HOH . D 4 HOH A 14 314 16 HOH HOH . D 4 HOH A 15 315 17 HOH HOH . D 4 HOH A 16 316 18 HOH HOH . D 4 HOH A 17 317 19 HOH HOH . D 4 HOH A 18 318 20 HOH HOH . D 4 HOH A 19 319 21 HOH HOH . D 4 HOH A 20 320 22 HOH HOH . D 4 HOH A 21 321 23 HOH HOH . D 4 HOH A 22 322 24 HOH HOH . D 4 HOH A 23 323 25 HOH HOH . D 4 HOH A 24 324 26 HOH HOH . D 4 HOH A 25 325 27 HOH HOH . D 4 HOH A 26 326 28 HOH HOH . D 4 HOH A 27 327 29 HOH HOH . D 4 HOH A 28 328 30 HOH HOH . D 4 HOH A 29 329 31 HOH HOH . D 4 HOH A 30 330 32 HOH HOH . D 4 HOH A 31 331 33 HOH HOH . D 4 HOH A 32 332 34 HOH HOH . D 4 HOH A 33 333 35 HOH HOH . D 4 HOH A 34 334 36 HOH HOH . D 4 HOH A 35 335 37 HOH HOH . D 4 HOH A 36 336 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CAT . . . B 2 -5.257 -0.987 -0.103 0.8 38.93 ? C1 CAT 201 A 1 HETATM 2 C C2 CAT . . . B 2 -6.688 -1.032 0.409 0.8 37.23 ? C2 CAT 201 A 1 HETATM 3 C C3 CAT . . . B 2 -7.026 0.205 1.235 0.8 36.59 ? C3 CAT 201 A 1 HETATM 4 C C4 CAT . . . B 2 -7.372 1.37 0.32 0.8 35.71 ? C4 CAT 201 A 1 HETATM 5 C C5 CAT . . . B 2 -8.586 2.125 0.841 0.8 34.63 ? C5 CAT 201 A 1 HETATM 6 C C6 CAT . . . B 2 -9.61 2.269 -0.27 0.8 33.03 ? C6 CAT 201 A 1 HETATM 7 C C7 CAT . . . B 2 -10.391 3.564 -0.123 0.8 33.3 ? C7 CAT 201 A 1 HETATM 8 C C8 CAT . . . B 2 -11.844 3.329 -0.513 0.8 30.92 ? C8 CAT 201 A 1 HETATM 9 C C9 CAT . . . B 2 -12.652 4.611 -0.43 0.8 30.01 ? C9 CAT 201 A 1 HETATM 10 C C10 CAT . . . B 2 -13.765 4.603 -1.458 0.8 30.11 ? C10 CAT 201 A 1 HETATM 11 C C11 CAT . . . B 2 -15.005 5.341 -0.987 0.8 30.27 ? C11 CAT 201 A 1 HETATM 12 C C12 CAT . . . B 2 -16.08 5.284 -2.051 0.8 31.19 ? C12 CAT 201 A 1 HETATM 13 C CA1 CAT . . . B 2 -3.064 -1.769 -0.116 0.8 39.43 ? CA1 CAT 201 A 1 HETATM 14 C CB1 CAT . . . B 2 -3.978 -1.167 2.012 0.8 39.85 ? CB1 CAT 201 A 1 HETATM 15 C CC1 CAT . . . B 2 -4.649 -3.172 0.844 0.8 41.75 ? CC1 CAT 201 A 1 HETATM 16 N NE1 CAT . . . B 2 -4.274 -1.764 0.693 0.8 40.29 ? NE1 CAT 201 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #