data_4IBB
#
_model_server_result.job_id            33FP0OOxpXg4KvwERTPE4Q 
_model_server_result.datetime_utc      '2024-12-03 13:54:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ibb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    4IBB 
#
_exptl.entry_id    4IBB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              461.53 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '{4-[(5R)-3-hydroxy-2-oxo-4-(thiophen-2-ylcarbonyl)-5-(2,4,5-trimethylphenyl)-2,5-dihydro-1H-pyrrol-1-yl]phenyl}acetic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4IBB 
_cell.length_a            51.48 
_cell.length_b            65.81 
_cell.length_c            72.227 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4IBB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C26 H23 N O5 S' 
_chem_comp.formula_weight    461.53 
_chem_comp.id                1DK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '{4-[(5R)-3-hydroxy-2-oxo-4-(thiophen-2-ylcarbonyl)-5-(2,4,5-trimethylphenyl)-2,5-dihydro-1H-pyrrol-1-yl]phenyl}acetic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAB CAZ 1DK sing 1 n n 
CAI CAJ 1DK doub 2 n y 
CAI CAK 1DK sing 3 n y 
CAA CAY 1DK sing 4 n n 
CAJ SAS 1DK sing 5 n y 
CAZ CAY 1DK doub 6 n y 
CAZ CAQ 1DK sing 7 n y 
CAK CBC 1DK doub 8 n y 
CAY CAP 1DK sing 9 n y 
SAS CBC 1DK sing 10 n y 
CBC CAU 1DK sing 11 n n 
CAQ CBE 1DK doub 12 n y 
CAP CBA 1DK doub 13 n y 
CAU OAE 1DK doub 14 n n 
CAU CAX 1DK sing 15 n n 
CBE CBA 1DK sing 16 n y 
CBE CBF 1DK sing 17 n n 
CBA CAC 1DK sing 18 n n 
CAX CBF 1DK sing 19 n n 
CAX CAW 1DK doub 20 n n 
CBF NBG 1DK sing 21 n n 
CAO CAM 1DK doub 22 n y 
CAO CBD 1DK sing 23 n y 
CAW OAG 1DK sing 24 n n 
CAW CAV 1DK sing 25 n n 
NBG CBD 1DK sing 26 n n 
NBG CAV 1DK sing 27 n n 
CAM CBB 1DK sing 28 n y 
CBD CAN 1DK doub 29 n y 
CAV OAF 1DK doub 30 n n 
CBB CAL 1DK doub 31 n y 
CBB CAR 1DK sing 32 n n 
CAN CAL 1DK sing 33 n y 
CAR CAT 1DK sing 34 n n 
CAT OAH 1DK doub 35 n n 
CAT OAD 1DK sing 36 n n 
CAC H1 1DK sing 37 n n 
CAC H2 1DK sing 38 n n 
CAC H3 1DK sing 39 n n 
CAP H4 1DK sing 40 n n 
CAA H5 1DK sing 41 n n 
CAA H6 1DK sing 42 n n 
CAA H7 1DK sing 43 n n 
CAB H8 1DK sing 44 n n 
CAB H9 1DK sing 45 n n 
CAB H10 1DK sing 46 n n 
CAQ H11 1DK sing 47 n n 
CAK H12 1DK sing 48 n n 
CAI H13 1DK sing 49 n n 
CAJ H14 1DK sing 50 n n 
OAG H16 1DK sing 51 n n 
CAO H17 1DK sing 52 n n 
CAM H18 1DK sing 53 n n 
CAN H19 1DK sing 54 n n 
CAL H20 1DK sing 55 n n 
CAR H21 1DK sing 56 n n 
CAR H22 1DK sing 57 n n 
OAD H23 1DK sing 58 n n 
CBF H24 1DK sing 59 n n 
#
_atom_sites.entry_id                     4IBB 
_atom_sites.fract_transf_matrix[1][1]    0.019425 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015195 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013845 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 1DK A 1 401 1 1DK 1DK . 
D 2 1DK B 1 401 1 1DK 1DK . 
E 3 HOH A 1 501 2 HOH HOH . 
E 3 HOH A 2 502 3 HOH HOH . 
E 3 HOH A 3 503 5 HOH HOH . 
E 3 HOH A 4 504 7 HOH HOH . 
E 3 HOH A 5 505 10 HOH HOH . 
E 3 HOH A 6 506 11 HOH HOH . 
E 3 HOH A 7 507 13 HOH HOH . 
E 3 HOH A 8 508 14 HOH HOH . 
E 3 HOH A 9 509 15 HOH HOH . 
E 3 HOH A 10 510 18 HOH HOH . 
E 3 HOH A 11 511 19 HOH HOH . 
E 3 HOH A 12 512 20 HOH HOH . 
E 3 HOH A 13 513 22 HOH HOH . 
E 3 HOH A 14 514 27 HOH HOH . 
E 3 HOH A 15 515 30 HOH HOH . 
E 3 HOH A 16 516 31 HOH HOH . 
E 3 HOH A 17 517 34 HOH HOH . 
E 3 HOH A 18 518 35 HOH HOH . 
E 3 HOH A 19 519 37 HOH HOH . 
E 3 HOH A 20 520 38 HOH HOH . 
E 3 HOH A 21 521 43 HOH HOH . 
E 3 HOH A 22 522 50 HOH HOH . 
E 3 HOH A 23 523 53 HOH HOH . 
E 3 HOH A 24 524 54 HOH HOH . 
E 3 HOH A 25 525 55 HOH HOH . 
E 3 HOH A 26 526 56 HOH HOH . 
E 3 HOH A 27 527 57 HOH HOH . 
E 3 HOH A 28 528 59 HOH HOH . 
E 3 HOH A 29 529 61 HOH HOH . 
E 3 HOH A 30 530 63 HOH HOH . 
E 3 HOH A 31 531 66 HOH HOH . 
E 3 HOH A 32 532 67 HOH HOH . 
E 3 HOH A 33 533 71 HOH HOH . 
E 3 HOH A 34 534 73 HOH HOH . 
E 3 HOH A 35 535 74 HOH HOH . 
E 3 HOH A 36 536 75 HOH HOH . 
E 3 HOH A 37 537 76 HOH HOH . 
E 3 HOH A 38 538 77 HOH HOH . 
E 3 HOH A 39 539 78 HOH HOH . 
E 3 HOH A 40 540 80 HOH HOH . 
E 3 HOH A 41 541 84 HOH HOH . 
E 3 HOH A 42 542 88 HOH HOH . 
E 3 HOH A 43 543 90 HOH HOH . 
E 3 HOH A 44 544 91 HOH HOH . 
E 3 HOH A 45 545 92 HOH HOH . 
E 3 HOH A 46 546 93 HOH HOH . 
E 3 HOH A 47 547 96 HOH HOH . 
E 3 HOH A 48 548 98 HOH HOH . 
E 3 HOH A 49 549 99 HOH HOH . 
E 3 HOH A 50 550 102 HOH HOH . 
E 3 HOH A 51 551 103 HOH HOH . 
E 3 HOH A 52 552 104 HOH HOH . 
E 3 HOH A 53 553 105 HOH HOH . 
E 3 HOH A 54 554 106 HOH HOH . 
E 3 HOH A 55 555 110 HOH HOH . 
E 3 HOH A 56 556 112 HOH HOH . 
E 3 HOH A 57 557 114 HOH HOH . 
E 3 HOH A 58 558 115 HOH HOH . 
E 3 HOH A 59 559 118 HOH HOH . 
E 3 HOH A 60 560 119 HOH HOH . 
E 3 HOH A 61 561 121 HOH HOH . 
E 3 HOH A 62 562 127 HOH HOH . 
E 3 HOH A 63 563 128 HOH HOH . 
E 3 HOH A 64 564 129 HOH HOH . 
E 3 HOH A 65 565 131 HOH HOH . 
E 3 HOH A 66 566 133 HOH HOH . 
E 3 HOH A 67 567 134 HOH HOH . 
E 3 HOH A 68 568 136 HOH HOH . 
E 3 HOH A 69 569 137 HOH HOH . 
E 3 HOH A 70 570 140 HOH HOH . 
E 3 HOH A 71 571 141 HOH HOH . 
E 3 HOH A 72 572 142 HOH HOH . 
F 3 HOH B 1 501 1 HOH HOH . 
F 3 HOH B 2 502 4 HOH HOH . 
F 3 HOH B 3 503 6 HOH HOH . 
F 3 HOH B 4 504 8 HOH HOH . 
F 3 HOH B 5 505 9 HOH HOH . 
F 3 HOH B 6 506 12 HOH HOH . 
F 3 HOH B 7 507 16 HOH HOH . 
F 3 HOH B 8 508 17 HOH HOH . 
F 3 HOH B 9 509 21 HOH HOH . 
F 3 HOH B 10 510 23 HOH HOH . 
F 3 HOH B 11 511 24 HOH HOH . 
F 3 HOH B 12 512 25 HOH HOH . 
F 3 HOH B 13 513 26 HOH HOH . 
F 3 HOH B 14 514 28 HOH HOH . 
F 3 HOH B 15 515 29 HOH HOH . 
F 3 HOH B 16 516 32 HOH HOH . 
F 3 HOH B 17 517 33 HOH HOH . 
F 3 HOH B 18 518 36 HOH HOH . 
F 3 HOH B 19 519 39 HOH HOH . 
F 3 HOH B 20 520 40 HOH HOH . 
F 3 HOH B 21 521 41 HOH HOH . 
F 3 HOH B 22 522 42 HOH HOH . 
F 3 HOH B 23 523 44 HOH HOH . 
F 3 HOH B 24 524 45 HOH HOH . 
F 3 HOH B 25 525 46 HOH HOH . 
F 3 HOH B 26 526 47 HOH HOH . 
F 3 HOH B 27 527 48 HOH HOH . 
F 3 HOH B 28 528 49 HOH HOH . 
F 3 HOH B 29 529 51 HOH HOH . 
F 3 HOH B 30 530 52 HOH HOH . 
F 3 HOH B 31 531 58 HOH HOH . 
F 3 HOH B 32 532 60 HOH HOH . 
F 3 HOH B 33 533 62 HOH HOH . 
F 3 HOH B 34 534 64 HOH HOH . 
F 3 HOH B 35 535 65 HOH HOH . 
F 3 HOH B 36 536 68 HOH HOH . 
F 3 HOH B 37 537 69 HOH HOH . 
F 3 HOH B 38 538 70 HOH HOH . 
F 3 HOH B 39 539 72 HOH HOH . 
F 3 HOH B 40 540 79 HOH HOH . 
F 3 HOH B 41 541 81 HOH HOH . 
F 3 HOH B 42 542 82 HOH HOH . 
F 3 HOH B 43 543 83 HOH HOH . 
F 3 HOH B 44 544 85 HOH HOH . 
F 3 HOH B 45 545 86 HOH HOH . 
F 3 HOH B 46 546 87 HOH HOH . 
F 3 HOH B 47 547 89 HOH HOH . 
F 3 HOH B 48 548 94 HOH HOH . 
F 3 HOH B 49 549 95 HOH HOH . 
F 3 HOH B 50 550 97 HOH HOH . 
F 3 HOH B 51 551 100 HOH HOH . 
F 3 HOH B 52 552 101 HOH HOH . 
F 3 HOH B 53 553 107 HOH HOH . 
F 3 HOH B 54 554 108 HOH HOH . 
F 3 HOH B 55 555 109 HOH HOH . 
F 3 HOH B 56 556 111 HOH HOH . 
F 3 HOH B 57 557 113 HOH HOH . 
F 3 HOH B 58 558 116 HOH HOH . 
F 3 HOH B 59 559 117 HOH HOH . 
F 3 HOH B 60 560 120 HOH HOH . 
F 3 HOH B 61 561 122 HOH HOH . 
F 3 HOH B 62 562 123 HOH HOH . 
F 3 HOH B 63 563 124 HOH HOH . 
F 3 HOH B 64 564 125 HOH HOH . 
F 3 HOH B 65 565 126 HOH HOH . 
F 3 HOH B 66 566 130 HOH HOH . 
F 3 HOH B 67 567 132 HOH HOH . 
F 3 HOH B 68 568 135 HOH HOH . 
F 3 HOH B 69 569 138 HOH HOH . 
F 3 HOH B 70 570 139 HOH HOH . 
F 3 HOH B 71 571 143 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAC 1DK . . . C 2 2.603 24.139 0.974 1 32.36 ? CAC 1DK 401 A 1 
HETATM 2 C CBA 1DK . . . C 2 1.876 23.493 2.122 1 28.42 ? CBA 1DK 401 A 1 
HETATM 3 C CAP 1DK . . . C 2 1.242 24.289 3.07 1 25.76 ? CAP 1DK 401 A 1 
HETATM 4 C CAY 1DK . . . C 2 0.573 23.688 4.126 1 33.61 ? CAY 1DK 401 A 1 
HETATM 5 C CAA 1DK . . . C 2 -0.119 24.526 5.169 1 29.27 ? CAA 1DK 401 A 1 
HETATM 6 C CAZ 1DK . . . C 2 0.533 22.288 4.244 1 37.78 ? CAZ 1DK 401 A 1 
HETATM 7 C CAB 1DK . . . C 2 -0.177 21.706 5.365 1 43.9 ? CAB 1DK 401 A 1 
HETATM 8 C CAQ 1DK . . . C 2 1.164 21.489 3.299 1 28.23 ? CAQ 1DK 401 A 1 
HETATM 9 C CBE 1DK . . . C 2 1.842 22.086 2.234 1 22.55 ? CBE 1DK 401 A 1 
HETATM 10 C CBF 1DK . . . C 2 2.526 21.244 1.198 1 39.94 ? CBF 1DK 401 A 1 
HETATM 11 C CAX 1DK . . . C 2 3.594 20.507 1.771 1 42.3 ? CAX 1DK 401 A 1 
HETATM 12 C CAU 1DK . . . C 2 4.727 21.21 2.527 1 40.48 ? CAU 1DK 401 A 1 
HETATM 13 O OAE 1DK . . . C 2 5.271 22.199 1.812 1 35.16 ? OAE 1DK 401 A 1 
HETATM 14 C CBC 1DK . . . C 2 5.73 20.428 3.314 1 36.92 ? CBC 1DK 401 A 1 
HETATM 15 C CAK 1DK . . . C 2 5.355 19.224 4.251 1 35.26 ? CAK 1DK 401 A 1 
HETATM 16 C CAI 1DK . . . C 2 6.786 18.782 4.911 1 40.02 ? CAI 1DK 401 A 1 
HETATM 17 C CAJ 1DK . . . C 2 7.93 19.712 4.416 1 41.04 ? CAJ 1DK 401 A 1 
HETATM 18 S SAS 1DK . . . C 2 7.303 20.849 3.357 1 35.9 ? SAS 1DK 401 A 1 
HETATM 19 C CAW 1DK . . . C 2 3.361 19.156 1.481 1 53.31 ? CAW 1DK 401 A 1 
HETATM 20 O OAG 1DK . . . C 2 4.123 18.142 1.821 1 56.21 ? OAG 1DK 401 A 1 
HETATM 21 C CAV 1DK . . . C 2 2.146 19.054 0.736 1 55.98 ? CAV 1DK 401 A 1 
HETATM 22 O OAF 1DK . . . C 2 1.589 17.905 0.274 1 52.75 ? OAF 1DK 401 A 1 
HETATM 23 N NBG 1DK . . . C 2 1.623 20.287 0.565 1 45.71 ? NBG 1DK 401 A 1 
HETATM 24 C CBD 1DK . . . C 2 0.47 20.632 -0.238 1 34.78 ? CBD 1DK 401 A 1 
HETATM 25 C CAO 1DK . . . C 2 0.63 21.463 -1.357 1 35.53 ? CAO 1DK 401 A 1 
HETATM 26 C CAM 1DK . . . C 2 -0.475 21.811 -2.127 1 31.52 ? CAM 1DK 401 A 1 
HETATM 27 C CAN 1DK . . . C 2 -0.782 20.162 0.118 1 35.4 ? CAN 1DK 401 A 1 
HETATM 28 C CAL 1DK . . . C 2 -1.885 20.504 -0.656 1 33.4 ? CAL 1DK 401 A 1 
HETATM 29 C CBB 1DK . . . C 2 -1.734 21.328 -1.765 1 39.83 ? CBB 1DK 401 A 1 
HETATM 30 C CAR 1DK . . . C 2 -2.954 21.653 -2.58 1 46.24 ? CAR 1DK 401 A 1 
HETATM 31 C CAT 1DK . . . C 2 -3.476 20.452 -3.345 1 52.19 ? CAT 1DK 401 A 1 
HETATM 32 O OAH 1DK . . . C 2 -4.581 19.94 -3.039 1 52.97 ? OAH 1DK 401 A 1 
HETATM 33 O OAD 1DK . . . C 2 -2.795 19.949 -4.262 1 54.07 ? OAD 1DK 401 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#