data_4IBF # _model_server_result.job_id 3_iYrYyzdsxIKVb5F2bBsQ _model_server_result.datetime_utc '2024-12-04 05:56:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ibf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4IBF # _exptl.entry_id 4IBF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 538.819 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4-{(2R)-2-(4-bromothiophen-2-yl)-3-[(5-chlorothiophen-2-yl)carbonyl]-4-hydroxy-5-oxo-2,5-dihydro-1H-pyrrol-1-yl}phenyl)acetic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IBF _cell.length_a 51.472 _cell.length_b 65.951 _cell.length_c 72.009 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IBF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H13 Br Cl N O5 S2' _chem_comp.formula_weight 538.819 _chem_comp.id 1D5 _chem_comp.mon_nstd_flag . _chem_comp.name '(4-{(2R)-2-(4-bromothiophen-2-yl)-3-[(5-chlorothiophen-2-yl)carbonyl]-4-hydroxy-5-oxo-2,5-dihydro-1H-pyrrol-1-yl}phenyl)acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAD CAS 1D5 doub 1 n n CAS OAA 1D5 sing 2 n n CAS CAP 1D5 sing 3 n n CAP CAZ 1D5 sing 4 n n CAJ CAZ 1D5 doub 5 n y CAJ CAM 1D5 sing 6 n y CAZ CAI 1D5 sing 7 n y CAM CBB 1D5 doub 8 n y CAI CAL 1D5 doub 9 n y CBB CAL 1D5 sing 10 n y CBB NBE 1D5 sing 11 n n NBE CBD 1D5 sing 12 n n NBE CAV 1D5 sing 13 n n OAC CAV 1D5 doub 14 n n CBD CAW 1D5 sing 15 n n CBD CBC 1D5 sing 16 n n CAV CAU 1D5 sing 17 n n CAW CAU 1D5 doub 18 n n CAW CAT 1D5 sing 19 n n CAU OAE 1D5 sing 20 n n CAO CBC 1D5 doub 21 n y CAO CAX 1D5 sing 22 n y CBC SAQ 1D5 sing 23 n y OAB CAT 1D5 doub 24 n n CAT CBA 1D5 sing 25 n n CAX BRA 1D5 sing 26 n n CAX CAN 1D5 doub 27 n y CBA SAR 1D5 sing 28 n y CBA CAK 1D5 doub 29 n y SAR CAY 1D5 sing 30 n y SAQ CAN 1D5 sing 31 n y CAK CAH 1D5 sing 32 n y CAY CAH 1D5 doub 33 n y CAY CLA 1D5 sing 34 n n OAA H1 1D5 sing 35 n n CAP H2 1D5 sing 36 n n CAP H3 1D5 sing 37 n n CAJ H4 1D5 sing 38 n n CAM H5 1D5 sing 39 n n CAI H6 1D5 sing 40 n n CAL H7 1D5 sing 41 n n CBD H8 1D5 sing 42 n n CAN H9 1D5 sing 43 n n CAO H10 1D5 sing 44 n n OAE H11 1D5 sing 45 n n CAH H12 1D5 sing 46 n n CAK H13 1D5 sing 47 n n # _atom_sites.entry_id 4IBF _atom_sites.fract_transf_matrix[1][1] 0.019428 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1D5 A 1 401 1 1D5 1D5 . D 2 1D5 B 1 401 1 1D5 1D5 . E 3 HOH A 1 501 3 HOH HOH . E 3 HOH A 2 502 4 HOH HOH . E 3 HOH A 3 503 5 HOH HOH . E 3 HOH A 4 504 7 HOH HOH . E 3 HOH A 5 505 8 HOH HOH . E 3 HOH A 6 506 9 HOH HOH . E 3 HOH A 7 507 12 HOH HOH . E 3 HOH A 8 508 15 HOH HOH . E 3 HOH A 9 509 16 HOH HOH . E 3 HOH A 10 510 18 HOH HOH . E 3 HOH A 11 511 21 HOH HOH . E 3 HOH A 12 512 22 HOH HOH . E 3 HOH A 13 513 23 HOH HOH . E 3 HOH A 14 514 25 HOH HOH . E 3 HOH A 15 515 28 HOH HOH . E 3 HOH A 16 516 31 HOH HOH . E 3 HOH A 17 517 32 HOH HOH . E 3 HOH A 18 518 37 HOH HOH . E 3 HOH A 19 519 39 HOH HOH . E 3 HOH A 20 520 40 HOH HOH . E 3 HOH A 21 521 41 HOH HOH . E 3 HOH A 22 522 43 HOH HOH . E 3 HOH A 23 523 44 HOH HOH . E 3 HOH A 24 524 46 HOH HOH . E 3 HOH A 25 525 47 HOH HOH . E 3 HOH A 26 526 50 HOH HOH . E 3 HOH A 27 527 51 HOH HOH . E 3 HOH A 28 528 52 HOH HOH . E 3 HOH A 29 529 54 HOH HOH . E 3 HOH A 30 530 56 HOH HOH . E 3 HOH A 31 531 58 HOH HOH . E 3 HOH A 32 532 59 HOH HOH . E 3 HOH A 33 533 60 HOH HOH . E 3 HOH A 34 534 62 HOH HOH . E 3 HOH A 35 535 63 HOH HOH . E 3 HOH A 36 536 64 HOH HOH . E 3 HOH A 37 537 66 HOH HOH . E 3 HOH A 38 538 68 HOH HOH . E 3 HOH A 39 539 72 HOH HOH . E 3 HOH A 40 540 74 HOH HOH . E 3 HOH A 41 541 76 HOH HOH . E 3 HOH A 42 542 78 HOH HOH . E 3 HOH A 43 543 81 HOH HOH . E 3 HOH A 44 544 83 HOH HOH . E 3 HOH A 45 545 84 HOH HOH . E 3 HOH A 46 546 85 HOH HOH . E 3 HOH A 47 547 88 HOH HOH . E 3 HOH A 48 548 90 HOH HOH . E 3 HOH A 49 549 91 HOH HOH . E 3 HOH A 50 550 92 HOH HOH . F 3 HOH B 1 501 1 HOH HOH . F 3 HOH B 2 502 2 HOH HOH . F 3 HOH B 3 503 6 HOH HOH . F 3 HOH B 4 504 10 HOH HOH . F 3 HOH B 5 505 11 HOH HOH . F 3 HOH B 6 506 13 HOH HOH . F 3 HOH B 7 507 14 HOH HOH . F 3 HOH B 8 508 17 HOH HOH . F 3 HOH B 9 509 19 HOH HOH . F 3 HOH B 10 510 20 HOH HOH . F 3 HOH B 11 511 24 HOH HOH . F 3 HOH B 12 512 26 HOH HOH . F 3 HOH B 13 513 27 HOH HOH . F 3 HOH B 14 514 29 HOH HOH . F 3 HOH B 15 515 30 HOH HOH . F 3 HOH B 16 516 33 HOH HOH . F 3 HOH B 17 517 34 HOH HOH . F 3 HOH B 18 518 35 HOH HOH . F 3 HOH B 19 519 36 HOH HOH . F 3 HOH B 20 520 38 HOH HOH . F 3 HOH B 21 521 42 HOH HOH . F 3 HOH B 22 522 45 HOH HOH . F 3 HOH B 23 523 48 HOH HOH . F 3 HOH B 24 524 49 HOH HOH . F 3 HOH B 25 525 53 HOH HOH . F 3 HOH B 26 526 55 HOH HOH . F 3 HOH B 27 527 57 HOH HOH . F 3 HOH B 28 528 61 HOH HOH . F 3 HOH B 29 529 65 HOH HOH . F 3 HOH B 30 530 67 HOH HOH . F 3 HOH B 31 531 69 HOH HOH . F 3 HOH B 32 532 70 HOH HOH . F 3 HOH B 33 533 71 HOH HOH . F 3 HOH B 34 534 73 HOH HOH . F 3 HOH B 35 535 75 HOH HOH . F 3 HOH B 36 536 77 HOH HOH . F 3 HOH B 37 537 79 HOH HOH . F 3 HOH B 38 538 80 HOH HOH . F 3 HOH B 39 539 82 HOH HOH . F 3 HOH B 40 540 86 HOH HOH . F 3 HOH B 41 541 87 HOH HOH . F 3 HOH B 42 542 89 HOH HOH . F 3 HOH B 43 543 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA 1D5 . . . C 2 -4.761 19.89 -3.152 1 71.81 ? OAA 1D5 401 A 1 HETATM 2 C CAS 1D5 . . . C 2 -3.649 20.395 -3.451 1 68.44 ? CAS 1D5 401 A 1 HETATM 3 O OAD 1D5 . . . C 2 -3.033 19.998 -4.476 1 73.46 ? OAD 1D5 401 A 1 HETATM 4 C CAP 1D5 . . . C 2 -3.063 21.452 -2.577 1 61.76 ? CAP 1D5 401 A 1 HETATM 5 C CAZ 1D5 . . . C 2 -1.838 21.077 -1.815 1 51.23 ? CAZ 1D5 401 A 1 HETATM 6 C CAJ 1D5 . . . C 2 -0.599 21.574 -2.199 1 44.29 ? CAJ 1D5 401 A 1 HETATM 7 C CAM 1D5 . . . C 2 0.54 21.219 -1.491 1 41.94 ? CAM 1D5 401 A 1 HETATM 8 C CAI 1D5 . . . C 2 -1.941 20.223 -0.726 1 45.51 ? CAI 1D5 401 A 1 HETATM 9 C CAL 1D5 . . . C 2 -0.801 19.873 -0.015 1 44.54 ? CAL 1D5 401 A 1 HETATM 10 C CBB 1D5 . . . C 2 0.44 20.364 -0.401 1 41.91 ? CBB 1D5 401 A 1 HETATM 11 N NBE 1D5 . . . C 2 1.621 20.013 0.331 1 44.05 ? NBE 1D5 401 A 1 HETATM 12 C CBD 1D5 . . . C 2 2.555 20.907 0.678 1 39.88 ? CBD 1D5 401 A 1 HETATM 13 C CBC 1D5 . . . C 2 2.057 21.98 1.565 1 33.98 ? CBC 1D5 401 A 1 HETATM 14 S SAQ 1D5 . . . C 2 1.447 21.671 3.095 1 43.54 ? SAQ 1D5 401 A 1 HETATM 15 C CAN 1D5 . . . C 2 1.043 23.233 3.557 1 32.09 ? CAN 1D5 401 A 1 HETATM 16 C CAX 1D5 . . . C 2 1.406 24.031 2.461 1 29.91 ? CAX 1D5 401 A 1 HETATM 17 BR BRA 1D5 . . . C 2 1.171 25.946 2.481 1 47.97 ? BRA 1D5 401 A 1 HETATM 18 C CAO 1D5 . . . C 2 1.97 23.353 1.344 1 26.54 ? CAO 1D5 401 A 1 HETATM 19 C CAV 1D5 . . . C 2 1.999 18.777 0.654 1 46.31 ? CAV 1D5 401 A 1 HETATM 20 O OAC 1D5 . . . C 2 1.236 17.649 0.466 1 44.11 ? OAC 1D5 401 A 1 HETATM 21 C CAU 1D5 . . . C 2 3.288 18.861 1.189 1 50.3 ? CAU 1D5 401 A 1 HETATM 22 O OAE 1D5 . . . C 2 4.048 17.799 1.62 1 51.84 ? OAE 1D5 401 A 1 HETATM 23 C CAW 1D5 . . . C 2 3.656 20.219 1.167 1 46.39 ? CAW 1D5 401 A 1 HETATM 24 C CAT 1D5 . . . C 2 4.854 20.931 1.732 1 45.01 ? CAT 1D5 401 A 1 HETATM 25 O OAB 1D5 . . . C 2 5.109 22.07 1.361 1 40.82 ? OAB 1D5 401 A 1 HETATM 26 C CBA 1D5 . . . C 2 5.773 20.34 2.741 1 44.35 ? CBA 1D5 401 A 1 HETATM 27 S SAR 1D5 . . . C 2 7.347 20.876 3.023 1 40.99 ? SAR 1D5 401 A 1 HETATM 28 C CAY 1D5 . . . C 2 7.761 19.795 4.247 1 46.08 ? CAY 1D5 401 A 1 HETATM 29 CL CLA 1D5 . . . C 2 9.284 19.726 5.056 1 51.41 ? CLA 1D5 401 A 1 HETATM 30 C CAH 1D5 . . . C 2 6.641 18.973 4.481 1 39.38 ? CAH 1D5 401 A 1 HETATM 31 C CAK 1D5 . . . C 2 5.528 19.285 3.641 1 43.95 ? CAK 1D5 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #