data_4IBK
#
_model_server_result.job_id            '_BGnjbWowH98D1D1uNB8PA' 
_model_server_result.datetime_utc      '2024-11-16 20:52:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ibk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":403}' 
#
_entry.id    4IBK 
#
_exptl.entry_id    4IBK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4IBK 
_cell.length_a            51.222 
_cell.length_b            65.689 
_cell.length_c            72.831 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4IBK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,H 1 1 
B,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 134 n n 
S C1 DMS sing 135 n n 
S C2 DMS sing 136 n n 
C1 H11 DMS sing 137 n n 
C1 H12 DMS sing 138 n n 
C1 H13 DMS sing 139 n n 
C2 H21 DMS sing 140 n n 
C2 H22 DMS sing 141 n n 
C2 H23 DMS sing 142 n n 
#
_atom_sites.entry_id                     4IBK 
_atom_sites.fract_transf_matrix[1][1]    0.019523 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015223 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01373 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 1DE A 1 401 1 1DE 1DE . 
D 3 GOL A 1 402 1 GOL GOL . 
E 4 DMS A 1 403 1 DMS DMS . 
F 4 DMS A 1 404 1 DMS DMS . 
G 2 1DE B 1 401 1 1DE 1DE . 
H 5 HOH A 1 501 1 HOH HOH . 
H 5 HOH A 2 502 2 HOH HOH . 
H 5 HOH A 3 503 3 HOH HOH . 
H 5 HOH A 4 504 4 HOH HOH . 
H 5 HOH A 5 505 6 HOH HOH . 
H 5 HOH A 6 506 9 HOH HOH . 
H 5 HOH A 7 507 11 HOH HOH . 
H 5 HOH A 8 508 14 HOH HOH . 
H 5 HOH A 9 509 16 HOH HOH . 
H 5 HOH A 10 510 19 HOH HOH . 
H 5 HOH A 11 511 21 HOH HOH . 
H 5 HOH A 12 512 28 HOH HOH . 
H 5 HOH A 13 513 31 HOH HOH . 
H 5 HOH A 14 514 33 HOH HOH . 
H 5 HOH A 15 515 39 HOH HOH . 
H 5 HOH A 16 516 40 HOH HOH . 
H 5 HOH A 17 517 41 HOH HOH . 
H 5 HOH A 18 518 43 HOH HOH . 
H 5 HOH A 19 519 44 HOH HOH . 
H 5 HOH A 20 520 47 HOH HOH . 
H 5 HOH A 21 521 48 HOH HOH . 
H 5 HOH A 22 522 50 HOH HOH . 
H 5 HOH A 23 523 51 HOH HOH . 
H 5 HOH A 24 524 52 HOH HOH . 
H 5 HOH A 25 525 53 HOH HOH . 
H 5 HOH A 26 526 58 HOH HOH . 
H 5 HOH A 27 527 59 HOH HOH . 
H 5 HOH A 28 528 60 HOH HOH . 
H 5 HOH A 29 529 61 HOH HOH . 
H 5 HOH A 30 530 62 HOH HOH . 
H 5 HOH A 31 531 67 HOH HOH . 
H 5 HOH A 32 532 68 HOH HOH . 
H 5 HOH A 33 533 69 HOH HOH . 
H 5 HOH A 34 534 70 HOH HOH . 
H 5 HOH A 35 535 71 HOH HOH . 
H 5 HOH A 36 536 72 HOH HOH . 
H 5 HOH A 37 537 73 HOH HOH . 
H 5 HOH A 38 538 74 HOH HOH . 
H 5 HOH A 39 539 75 HOH HOH . 
H 5 HOH A 40 540 77 HOH HOH . 
H 5 HOH A 41 541 79 HOH HOH . 
H 5 HOH A 42 542 81 HOH HOH . 
H 5 HOH A 43 543 82 HOH HOH . 
H 5 HOH A 44 544 86 HOH HOH . 
H 5 HOH A 45 545 87 HOH HOH . 
H 5 HOH A 46 546 88 HOH HOH . 
H 5 HOH A 47 547 89 HOH HOH . 
H 5 HOH A 48 548 90 HOH HOH . 
H 5 HOH A 49 549 91 HOH HOH . 
H 5 HOH A 50 550 93 HOH HOH . 
H 5 HOH A 51 551 95 HOH HOH . 
H 5 HOH A 52 552 96 HOH HOH . 
H 5 HOH A 53 553 97 HOH HOH . 
H 5 HOH A 54 554 99 HOH HOH . 
H 5 HOH A 55 555 102 HOH HOH . 
H 5 HOH A 56 556 104 HOH HOH . 
H 5 HOH A 57 557 105 HOH HOH . 
H 5 HOH A 58 558 106 HOH HOH . 
H 5 HOH A 59 559 108 HOH HOH . 
H 5 HOH A 60 560 111 HOH HOH . 
H 5 HOH A 61 561 117 HOH HOH . 
H 5 HOH A 62 562 118 HOH HOH . 
H 5 HOH A 63 563 125 HOH HOH . 
H 5 HOH A 64 564 126 HOH HOH . 
H 5 HOH A 65 565 127 HOH HOH . 
H 5 HOH A 66 566 128 HOH HOH . 
H 5 HOH A 67 567 132 HOH HOH . 
H 5 HOH A 68 568 135 HOH HOH . 
H 5 HOH A 69 569 140 HOH HOH . 
H 5 HOH A 70 570 141 HOH HOH . 
H 5 HOH A 71 571 146 HOH HOH . 
H 5 HOH A 72 572 148 HOH HOH . 
H 5 HOH A 73 573 149 HOH HOH . 
H 5 HOH A 74 574 150 HOH HOH . 
H 5 HOH A 75 575 153 HOH HOH . 
H 5 HOH A 76 576 154 HOH HOH . 
H 5 HOH A 77 577 156 HOH HOH . 
H 5 HOH A 78 578 157 HOH HOH . 
H 5 HOH A 79 579 161 HOH HOH . 
H 5 HOH A 80 580 162 HOH HOH . 
H 5 HOH A 81 581 164 HOH HOH . 
H 5 HOH A 82 582 166 HOH HOH . 
H 5 HOH A 83 583 167 HOH HOH . 
H 5 HOH A 84 584 169 HOH HOH . 
H 5 HOH A 85 585 170 HOH HOH . 
H 5 HOH A 86 586 172 HOH HOH . 
H 5 HOH A 87 587 173 HOH HOH . 
H 5 HOH A 88 588 174 HOH HOH . 
H 5 HOH A 89 589 175 HOH HOH . 
H 5 HOH A 90 590 177 HOH HOH . 
H 5 HOH A 91 591 178 HOH HOH . 
H 5 HOH A 92 592 181 HOH HOH . 
H 5 HOH A 93 593 184 HOH HOH . 
H 5 HOH A 94 594 185 HOH HOH . 
H 5 HOH A 95 595 188 HOH HOH . 
H 5 HOH A 96 596 190 HOH HOH . 
H 5 HOH A 97 597 192 HOH HOH . 
H 5 HOH A 98 598 193 HOH HOH . 
H 5 HOH A 99 599 195 HOH HOH . 
H 5 HOH A 100 600 197 HOH HOH . 
H 5 HOH A 101 601 198 HOH HOH . 
H 5 HOH A 102 602 200 HOH HOH . 
H 5 HOH A 103 603 201 HOH HOH . 
H 5 HOH A 104 604 202 HOH HOH . 
H 5 HOH A 105 605 204 HOH HOH . 
H 5 HOH A 106 606 206 HOH HOH . 
H 5 HOH A 107 607 207 HOH HOH . 
H 5 HOH A 108 608 210 HOH HOH . 
H 5 HOH A 109 609 211 HOH HOH . 
H 5 HOH A 110 610 212 HOH HOH . 
H 5 HOH A 111 611 215 HOH HOH . 
H 5 HOH A 112 612 216 HOH HOH . 
I 5 HOH B 1 501 5 HOH HOH . 
I 5 HOH B 2 502 7 HOH HOH . 
I 5 HOH B 3 503 8 HOH HOH . 
I 5 HOH B 4 504 10 HOH HOH . 
I 5 HOH B 5 505 12 HOH HOH . 
I 5 HOH B 6 506 13 HOH HOH . 
I 5 HOH B 7 507 15 HOH HOH . 
I 5 HOH B 8 508 17 HOH HOH . 
I 5 HOH B 9 509 18 HOH HOH . 
I 5 HOH B 10 510 20 HOH HOH . 
I 5 HOH B 11 511 22 HOH HOH . 
I 5 HOH B 12 512 23 HOH HOH . 
I 5 HOH B 13 513 24 HOH HOH . 
I 5 HOH B 14 514 25 HOH HOH . 
I 5 HOH B 15 515 26 HOH HOH . 
I 5 HOH B 16 516 27 HOH HOH . 
I 5 HOH B 17 517 29 HOH HOH . 
I 5 HOH B 18 518 30 HOH HOH . 
I 5 HOH B 19 519 32 HOH HOH . 
I 5 HOH B 20 520 34 HOH HOH . 
I 5 HOH B 21 521 35 HOH HOH . 
I 5 HOH B 22 522 36 HOH HOH . 
I 5 HOH B 23 523 37 HOH HOH . 
I 5 HOH B 24 524 38 HOH HOH . 
I 5 HOH B 25 525 42 HOH HOH . 
I 5 HOH B 26 526 45 HOH HOH . 
I 5 HOH B 27 527 46 HOH HOH . 
I 5 HOH B 28 528 49 HOH HOH . 
I 5 HOH B 29 529 54 HOH HOH . 
I 5 HOH B 30 530 55 HOH HOH . 
I 5 HOH B 31 531 56 HOH HOH . 
I 5 HOH B 32 532 57 HOH HOH . 
I 5 HOH B 33 533 63 HOH HOH . 
I 5 HOH B 34 534 64 HOH HOH . 
I 5 HOH B 35 535 65 HOH HOH . 
I 5 HOH B 36 536 66 HOH HOH . 
I 5 HOH B 37 537 76 HOH HOH . 
I 5 HOH B 38 538 78 HOH HOH . 
I 5 HOH B 39 539 80 HOH HOH . 
I 5 HOH B 40 540 83 HOH HOH . 
I 5 HOH B 41 541 84 HOH HOH . 
I 5 HOH B 42 542 85 HOH HOH . 
I 5 HOH B 43 543 92 HOH HOH . 
I 5 HOH B 44 544 94 HOH HOH . 
I 5 HOH B 45 545 98 HOH HOH . 
I 5 HOH B 46 546 100 HOH HOH . 
I 5 HOH B 47 547 101 HOH HOH . 
I 5 HOH B 48 548 103 HOH HOH . 
I 5 HOH B 49 549 107 HOH HOH . 
I 5 HOH B 50 550 109 HOH HOH . 
I 5 HOH B 51 551 110 HOH HOH . 
I 5 HOH B 52 552 112 HOH HOH . 
I 5 HOH B 53 553 113 HOH HOH . 
I 5 HOH B 54 554 114 HOH HOH . 
I 5 HOH B 55 555 115 HOH HOH . 
I 5 HOH B 56 556 116 HOH HOH . 
I 5 HOH B 57 557 119 HOH HOH . 
I 5 HOH B 58 558 120 HOH HOH . 
I 5 HOH B 59 559 121 HOH HOH . 
I 5 HOH B 60 560 122 HOH HOH . 
I 5 HOH B 61 561 123 HOH HOH . 
I 5 HOH B 62 562 124 HOH HOH . 
I 5 HOH B 63 563 129 HOH HOH . 
I 5 HOH B 64 564 130 HOH HOH . 
I 5 HOH B 65 565 131 HOH HOH . 
I 5 HOH B 66 566 133 HOH HOH . 
I 5 HOH B 67 567 134 HOH HOH . 
I 5 HOH B 68 568 136 HOH HOH . 
I 5 HOH B 69 569 137 HOH HOH . 
I 5 HOH B 70 570 138 HOH HOH . 
I 5 HOH B 71 571 139 HOH HOH . 
I 5 HOH B 72 572 142 HOH HOH . 
I 5 HOH B 73 573 143 HOH HOH . 
I 5 HOH B 74 574 144 HOH HOH . 
I 5 HOH B 75 575 145 HOH HOH . 
I 5 HOH B 76 576 147 HOH HOH . 
I 5 HOH B 77 577 151 HOH HOH . 
I 5 HOH B 78 578 152 HOH HOH . 
I 5 HOH B 79 579 155 HOH HOH . 
I 5 HOH B 80 580 158 HOH HOH . 
I 5 HOH B 81 581 159 HOH HOH . 
I 5 HOH B 82 582 160 HOH HOH . 
I 5 HOH B 83 583 163 HOH HOH . 
I 5 HOH B 84 584 165 HOH HOH . 
I 5 HOH B 85 585 168 HOH HOH . 
I 5 HOH B 86 586 171 HOH HOH . 
I 5 HOH B 87 587 176 HOH HOH . 
I 5 HOH B 88 588 179 HOH HOH . 
I 5 HOH B 89 589 180 HOH HOH . 
I 5 HOH B 90 590 182 HOH HOH . 
I 5 HOH B 91 591 183 HOH HOH . 
I 5 HOH B 92 592 186 HOH HOH . 
I 5 HOH B 93 593 187 HOH HOH . 
I 5 HOH B 94 594 189 HOH HOH . 
I 5 HOH B 95 595 191 HOH HOH . 
I 5 HOH B 96 596 194 HOH HOH . 
I 5 HOH B 97 597 196 HOH HOH . 
I 5 HOH B 98 598 199 HOH HOH . 
I 5 HOH B 99 599 203 HOH HOH . 
I 5 HOH B 100 600 205 HOH HOH . 
I 5 HOH B 101 601 208 HOH HOH . 
I 5 HOH B 102 602 209 HOH HOH . 
I 5 HOH B 103 603 213 HOH HOH . 
I 5 HOH B 104 604 214 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . E 4 0.509 19.745 7.539 1 73.79 ? S DMS 403 A 1 
HETATM 2 O O DMS . . . E 4 0.568 21.14 8.088 1 69.32 ? O DMS 403 A 1 
HETATM 3 C C1 DMS . . . E 4 -0.823 19.594 6.317 1 55.53 ? C1 DMS 403 A 1 
HETATM 4 C C2 DMS . . . E 4 1.932 19.414 6.46 1 48.64 ? C2 DMS 403 A 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#