data_4IBP # _model_server_result.job_id 6WTMs6eJIwAat4LVZXPvag _model_server_result.datetime_utc '2024-10-19 21:27:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ibp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4IBP # _exptl.entry_id 4IBP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IBP _cell.length_a 70.531 _cell.length_b 81.915 _cell.length_c 111.969 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IBP _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 -x+1/2,y,-z -1 0 0 0 1 0 0 0 -1 35.2655 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 17 A VAL 15 1_555 A N MSE 18 A MSE 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C MSE 18 A MSE 16 1_555 A N VAL 19 A VAL 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C ILE 106 A ILE 104 1_555 A N MSE 107 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 A C MSE 107 A MSE 105 1_555 A N ASP 108 A ASP 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C SER 198 A SER 196 1_555 A N MSE 199 A MSE 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C MSE 199 A MSE 197 1_555 A N LEU 200 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 GSH sing 129 n n N1 HN11 GSH sing 130 n n N1 HN12 GSH sing 131 n n CA1 C1 GSH sing 132 n n CA1 CB1 GSH sing 133 n n CA1 HA1 GSH sing 134 n n C1 O11 GSH doub 135 n n C1 O12 GSH sing 136 n n O12 H12 GSH sing 137 n n CB1 CG1 GSH sing 138 n n CB1 HB12 GSH sing 139 n n CB1 HB13 GSH sing 140 n n CG1 CD1 GSH sing 141 n n CG1 HG12 GSH sing 142 n n CG1 HG13 GSH sing 143 n n CD1 OE1 GSH doub 144 n n CD1 N2 GSH sing 145 n n N2 CA2 GSH sing 146 n n N2 HN2 GSH sing 147 n n CA2 C2 GSH sing 148 n n CA2 CB2 GSH sing 149 n n CA2 HA2 GSH sing 150 n n C2 O2 GSH doub 151 n n C2 N3 GSH sing 152 n n CB2 SG2 GSH sing 153 n n CB2 HB22 GSH sing 154 n n CB2 HB23 GSH sing 155 n n SG2 HSG GSH sing 156 n n N3 CA3 GSH sing 157 n n N3 HN3 GSH sing 158 n n CA3 C3 GSH sing 159 n n CA3 HA31 GSH sing 160 n n CA3 HA32 GSH sing 161 n n C3 O31 GSH doub 162 n n C3 O32 GSH sing 163 n n O32 H32 GSH sing 164 n n # _atom_sites.entry_id 4IBP _atom_sites.fract_transf_matrix[1][1] 0.014178 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 1 SO4 SO4 . C 3 GSH A 1 302 1 GSH GSH . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 2 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 5 HOH HOH . D 4 HOH A 6 406 6 HOH HOH . D 4 HOH A 7 407 7 HOH HOH . D 4 HOH A 8 408 9 HOH HOH . D 4 HOH A 9 409 10 HOH HOH . D 4 HOH A 10 410 11 HOH HOH . D 4 HOH A 11 411 12 HOH HOH . D 4 HOH A 12 412 13 HOH HOH . D 4 HOH A 13 413 14 HOH HOH . D 4 HOH A 14 414 15 HOH HOH . D 4 HOH A 15 415 16 HOH HOH . D 4 HOH A 16 416 17 HOH HOH . D 4 HOH A 17 417 18 HOH HOH . D 4 HOH A 18 418 19 HOH HOH . D 4 HOH A 19 419 20 HOH HOH . D 4 HOH A 20 420 21 HOH HOH . D 4 HOH A 21 421 22 HOH HOH . D 4 HOH A 22 422 23 HOH HOH . D 4 HOH A 23 423 24 HOH HOH . D 4 HOH A 24 424 25 HOH HOH . D 4 HOH A 25 425 26 HOH HOH . D 4 HOH A 26 426 27 HOH HOH . D 4 HOH A 27 427 28 HOH HOH . D 4 HOH A 28 428 29 HOH HOH . D 4 HOH A 29 429 30 HOH HOH . D 4 HOH A 30 430 31 HOH HOH . D 4 HOH A 31 431 32 HOH HOH . D 4 HOH A 32 432 33 HOH HOH . D 4 HOH A 33 433 34 HOH HOH . D 4 HOH A 34 434 35 HOH HOH . D 4 HOH A 35 435 36 HOH HOH . D 4 HOH A 36 436 37 HOH HOH . D 4 HOH A 37 437 38 HOH HOH . D 4 HOH A 38 438 39 HOH HOH . D 4 HOH A 39 439 40 HOH HOH . D 4 HOH A 40 440 41 HOH HOH . D 4 HOH A 41 441 43 HOH HOH . D 4 HOH A 42 442 44 HOH HOH . D 4 HOH A 43 443 45 HOH HOH . D 4 HOH A 44 444 47 HOH HOH . D 4 HOH A 45 445 48 HOH HOH . D 4 HOH A 46 446 50 HOH HOH . D 4 HOH A 47 447 51 HOH HOH . D 4 HOH A 48 448 52 HOH HOH . D 4 HOH A 49 449 53 HOH HOH . D 4 HOH A 50 450 54 HOH HOH . D 4 HOH A 51 451 55 HOH HOH . D 4 HOH A 52 452 56 HOH HOH . D 4 HOH A 53 453 57 HOH HOH . D 4 HOH A 54 454 58 HOH HOH . D 4 HOH A 55 455 59 HOH HOH . D 4 HOH A 56 456 60 HOH HOH . D 4 HOH A 57 457 61 HOH HOH . D 4 HOH A 58 458 62 HOH HOH . D 4 HOH A 59 459 64 HOH HOH . D 4 HOH A 60 460 66 HOH HOH . D 4 HOH A 61 461 67 HOH HOH . D 4 HOH A 62 462 68 HOH HOH . D 4 HOH A 63 463 69 HOH HOH . D 4 HOH A 64 464 70 HOH HOH . D 4 HOH A 65 465 71 HOH HOH . D 4 HOH A 66 466 72 HOH HOH . D 4 HOH A 67 467 73 HOH HOH . D 4 HOH A 68 468 74 HOH HOH . D 4 HOH A 69 469 75 HOH HOH . D 4 HOH A 70 470 76 HOH HOH . D 4 HOH A 71 471 78 HOH HOH . D 4 HOH A 72 472 79 HOH HOH . D 4 HOH A 73 473 80 HOH HOH . D 4 HOH A 74 474 81 HOH HOH . D 4 HOH A 75 475 82 HOH HOH . D 4 HOH A 76 476 83 HOH HOH . D 4 HOH A 77 477 84 HOH HOH . D 4 HOH A 78 478 85 HOH HOH . D 4 HOH A 79 479 86 HOH HOH . D 4 HOH A 80 480 87 HOH HOH . D 4 HOH A 81 481 88 HOH HOH . D 4 HOH A 82 482 89 HOH HOH . D 4 HOH A 83 483 91 HOH HOH . D 4 HOH A 84 484 92 HOH HOH . D 4 HOH A 85 485 93 HOH HOH . D 4 HOH A 86 486 98 HOH HOH . D 4 HOH A 87 487 99 HOH HOH . D 4 HOH A 88 488 102 HOH HOH . D 4 HOH A 89 489 103 HOH HOH . D 4 HOH A 90 490 104 HOH HOH . D 4 HOH A 91 491 106 HOH HOH . D 4 HOH A 92 492 107 HOH HOH . D 4 HOH A 93 493 109 HOH HOH . D 4 HOH A 94 494 110 HOH HOH . D 4 HOH A 95 495 111 HOH HOH . D 4 HOH A 96 496 112 HOH HOH . D 4 HOH A 97 497 113 HOH HOH . D 4 HOH A 98 498 114 HOH HOH . D 4 HOH A 99 499 115 HOH HOH . D 4 HOH A 100 500 116 HOH HOH . D 4 HOH A 101 501 117 HOH HOH . D 4 HOH A 102 502 118 HOH HOH . D 4 HOH A 103 503 119 HOH HOH . D 4 HOH A 104 504 120 HOH HOH . D 4 HOH A 105 505 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . C 3 21.552 39.01 0.975 1 41.32 ? N1 GSH 302 A 1 HETATM 2 C CA1 GSH . . . C 3 22.8 39.187 1.632 1 45.2 ? CA1 GSH 302 A 1 HETATM 3 C C1 GSH . . . C 3 23.036 38.058 2.591 1 38.44 ? C1 GSH 302 A 1 HETATM 4 O O11 GSH . . . C 3 22.064 37.437 3.095 1 37.48 ? O11 GSH 302 A 1 HETATM 5 O O12 GSH . . . C 3 24.207 37.692 2.9 1 40.81 ? O12 GSH 302 A 1 HETATM 6 C CB1 GSH . . . C 3 22.787 40.489 2.366 1 43.91 ? CB1 GSH 302 A 1 HETATM 7 C CG1 GSH . . . C 3 24.155 40.687 3.033 1 42.81 ? CG1 GSH 302 A 1 HETATM 8 C CD1 GSH . . . C 3 24.42 42.139 3.421 1 47.04 ? CD1 GSH 302 A 1 HETATM 9 O OE1 GSH . . . C 3 23.656 43.023 3.086 1 50.3 ? OE1 GSH 302 A 1 HETATM 10 N N2 GSH . . . C 3 25.615 42.471 4.215 1 45.61 ? N2 GSH 302 A 1 HETATM 11 C CA2 GSH . . . C 3 25.922 43.821 4.582 1 48.99 ? CA2 GSH 302 A 1 HETATM 12 C C2 GSH . . . C 3 26.799 44.36 3.467 1 50.34 ? C2 GSH 302 A 1 HETATM 13 O O2 GSH . . . C 3 27.614 43.6 2.92 1 48.62 ? O2 GSH 302 A 1 HETATM 14 C CB2 GSH . . . C 3 26.771 43.811 5.808 1 46.69 ? CB2 GSH 302 A 1 HETATM 15 S SG2 GSH . . . C 3 25.723 43.592 7.211 1 53.04 ? SG2 GSH 302 A 1 HETATM 16 N N3 GSH . . . C 3 26.72 45.743 3.022 1 53.17 ? N3 GSH 302 A 1 HETATM 17 C CA3 GSH . . . C 3 27.589 46.18 1.947 1 53.67 ? CA3 GSH 302 A 1 HETATM 18 C C3 GSH . . . C 3 26.741 46.65 0.81 1 59.4 ? C3 GSH 302 A 1 HETATM 19 O O31 GSH . . . C 3 27.271 47.186 -0.202 1 62.34 ? O31 GSH 302 A 1 HETATM 20 O O32 GSH . . . C 3 25.492 46.512 0.86 1 55.24 ? O32 GSH 302 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #