data_4IC3 # _model_server_result.job_id jjPx6hGwJ2DMTdDDM-SmtQ _model_server_result.datetime_utc '2024-11-04 22:42:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ic3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1003}' # _entry.id 4IC3 # _exptl.entry_id 4IC3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.47 _cell.angle_gamma 90 _cell.entry_id 4IC3 _cell.length_a 35.735 _cell.length_b 48.471 _cell.length_c 39.967 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IC3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 27 A CYS 450 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc2 A SG CYS 30 A CYS 453 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc3 A OD1 ASP 32 A ASP 455 1_555 E NI NI . A NI 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc4 A OD2 ASP 32 A ASP 455 1_555 E NI NI . A NI 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc5 A SG CYS 42 A CYS 465 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc6 A ND1 HIS 44 A HIS 467 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc7 A SG CYS 48 A CYS 471 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc8 A SG CYS 51 A CYS 474 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc9 A SG CYS 58 A CYS 481 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc10 A SG CYS 61 A CYS 484 1_555 D ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc11 E NI NI . A NI 1003 1_555 I O HOH . A HOH 1118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc12 E NI NI . A NI 1003 1_555 I O HOH . A HOH 1120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc13 E NI NI . A NI 1003 1_555 I O HOH . A HOH 1145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc14 B SG CYS 27 B CYS 450 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc15 B SG CYS 30 B CYS 453 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc16 B OD1 ASP 32 B ASP 455 1_555 H NI NI . B NI 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc17 B SG CYS 42 B CYS 465 1_555 G ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc18 B ND1 HIS 44 B HIS 467 1_555 G ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc19 B SG CYS 48 B CYS 471 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc20 B SG CYS 51 B CYS 474 1_555 F ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc21 B SG CYS 58 B CYS 481 1_555 G ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc22 B SG CYS 61 B CYS 484 1_555 G ZN ZN . B ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc23 H NI NI . B NI 1003 1_555 J O HOH . B HOH 1130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc24 H NI NI . B NI 1003 1_555 J O HOH . B HOH 1144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc25 H NI NI . B NI 1003 1_555 J O HOH . B HOH 1148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc26 H NI NI . B NI 1003 1_555 J O HOH . B HOH 1149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4IC3 _atom_sites.fract_transf_matrix[1][1] 0.027984 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003669 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1001 1001 ZN ZN . D 2 ZN A 1 1002 1002 ZN ZN . E 3 NI A 1 1003 2 NI NI . F 2 ZN B 1 1001 1001 ZN ZN . G 2 ZN B 1 1002 1002 ZN ZN . H 3 NI B 1 1003 1 NI NI . I 4 HOH A 1 1101 11 HOH HOH . I 4 HOH A 2 1102 15 HOH HOH . I 4 HOH A 3 1103 17 HOH HOH . I 4 HOH A 4 1104 18 HOH HOH . I 4 HOH A 5 1105 19 HOH HOH . I 4 HOH A 6 1106 20 HOH HOH . I 4 HOH A 7 1107 24 HOH HOH . I 4 HOH A 8 1108 28 HOH HOH . I 4 HOH A 9 1109 30 HOH HOH . I 4 HOH A 10 1110 31 HOH HOH . I 4 HOH A 11 1111 32 HOH HOH . I 4 HOH A 12 1112 36 HOH HOH . I 4 HOH A 13 1113 37 HOH HOH . I 4 HOH A 14 1114 38 HOH HOH . I 4 HOH A 15 1115 39 HOH HOH . I 4 HOH A 16 1116 41 HOH HOH . I 4 HOH A 17 1117 42 HOH HOH . I 4 HOH A 18 1118 48 HOH HOH . I 4 HOH A 19 1119 50 HOH HOH . I 4 HOH A 20 1120 56 HOH HOH . I 4 HOH A 21 1121 62 HOH HOH . I 4 HOH A 22 1122 63 HOH HOH . I 4 HOH A 23 1123 65 HOH HOH . I 4 HOH A 24 1124 66 HOH HOH . I 4 HOH A 25 1125 73 HOH HOH . I 4 HOH A 26 1126 74 HOH HOH . I 4 HOH A 27 1127 75 HOH HOH . I 4 HOH A 28 1128 76 HOH HOH . I 4 HOH A 29 1129 77 HOH HOH . I 4 HOH A 30 1130 78 HOH HOH . I 4 HOH A 31 1131 85 HOH HOH . I 4 HOH A 32 1132 87 HOH HOH . I 4 HOH A 33 1133 89 HOH HOH . I 4 HOH A 34 1134 93 HOH HOH . I 4 HOH A 35 1135 94 HOH HOH . I 4 HOH A 36 1136 95 HOH HOH . I 4 HOH A 37 1137 96 HOH HOH . I 4 HOH A 38 1138 97 HOH HOH . I 4 HOH A 39 1139 98 HOH HOH . I 4 HOH A 40 1140 99 HOH HOH . I 4 HOH A 41 1141 100 HOH HOH . I 4 HOH A 42 1142 101 HOH HOH . I 4 HOH A 43 1143 104 HOH HOH . I 4 HOH A 44 1144 105 HOH HOH . I 4 HOH A 45 1145 113 HOH HOH . J 4 HOH B 1 1101 106 HOH HOH . J 4 HOH B 2 1102 2 HOH HOH . J 4 HOH B 3 1103 3 HOH HOH . J 4 HOH B 4 1104 4 HOH HOH . J 4 HOH B 5 1105 6 HOH HOH . J 4 HOH B 6 1106 7 HOH HOH . J 4 HOH B 7 1107 8 HOH HOH . J 4 HOH B 8 1108 9 HOH HOH . J 4 HOH B 9 1109 10 HOH HOH . J 4 HOH B 10 1110 12 HOH HOH . J 4 HOH B 11 1111 13 HOH HOH . J 4 HOH B 12 1112 14 HOH HOH . J 4 HOH B 13 1113 16 HOH HOH . J 4 HOH B 14 1114 21 HOH HOH . J 4 HOH B 15 1115 22 HOH HOH . J 4 HOH B 16 1116 23 HOH HOH . J 4 HOH B 17 1117 26 HOH HOH . J 4 HOH B 18 1118 27 HOH HOH . J 4 HOH B 19 1119 29 HOH HOH . J 4 HOH B 20 1120 34 HOH HOH . J 4 HOH B 21 1121 40 HOH HOH . J 4 HOH B 22 1122 43 HOH HOH . J 4 HOH B 23 1123 44 HOH HOH . J 4 HOH B 24 1124 46 HOH HOH . J 4 HOH B 25 1125 49 HOH HOH . J 4 HOH B 26 1126 51 HOH HOH . J 4 HOH B 27 1127 52 HOH HOH . J 4 HOH B 28 1128 54 HOH HOH . J 4 HOH B 29 1129 57 HOH HOH . J 4 HOH B 30 1130 59 HOH HOH . J 4 HOH B 31 1131 64 HOH HOH . J 4 HOH B 32 1132 67 HOH HOH . J 4 HOH B 33 1133 68 HOH HOH . J 4 HOH B 34 1134 69 HOH HOH . J 4 HOH B 35 1135 79 HOH HOH . J 4 HOH B 36 1136 80 HOH HOH . J 4 HOH B 37 1137 83 HOH HOH . J 4 HOH B 38 1138 84 HOH HOH . J 4 HOH B 39 1139 86 HOH HOH . J 4 HOH B 40 1140 90 HOH HOH . J 4 HOH B 41 1141 91 HOH HOH . J 4 HOH B 42 1142 92 HOH HOH . J 4 HOH B 43 1143 102 HOH HOH . J 4 HOH B 44 1144 103 HOH HOH . J 4 HOH B 45 1145 107 HOH HOH . J 4 HOH B 46 1146 109 HOH HOH . J 4 HOH B 47 1147 110 HOH HOH . J 4 HOH B 48 1148 111 HOH HOH . J 4 HOH B 49 1149 114 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x -10.491 _atom_site.Cartn_y 14.532 _atom_site.Cartn_z 10.966 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 1003 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #