data_4IC5 # _model_server_result.job_id CML8cI_0qCtBanTtfgUBfQ _model_server_result.datetime_utc '2024-11-01 03:35:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ic5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":401}' # _entry.id 4IC5 # _exptl.entry_id 4IC5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.91 _cell.angle_gamma 90 _cell.entry_id 4IC5 _cell.length_a 109.09 _cell.length_b 125.952 _cell.length_c 83.325 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IC5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 PISA monomeric 1 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 A,D,E,F,I 2 1 B,G,J 3 1 C,H,K 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 33 A GLU 82 1_555 D CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc2 A O LEU 35 A LEU 84 1_555 D CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc3 A OE2 GLU 38 A GLU 87 1_555 E CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc4 A OE1 GLU 38 A GLU 87 1_555 E CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? metalc ? metalc5 A OE2 GLU 40 A GLU 89 1_555 D CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc6 A OD1 ASP 211 A ASP 260 1_555 F CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.187 ? metalc ? metalc7 E CA CA . A CA 402 1_555 B OE1 GLU 38 B GLU 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc8 E CA CA . A CA 402 1_555 B OE2 GLU 38 B GLU 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.184 ? metalc ? metalc9 E CA CA . A CA 402 1_555 J O HOH . B HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.955 ? metalc ? metalc10 E CA CA . A CA 402 1_555 C OE2 GLU 38 C GLU 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc11 E CA CA . A CA 402 1_555 C OE1 GLU 38 C GLU 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.058 ? metalc ? metalc12 E CA CA . A CA 402 1_555 K O HOH . C HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.147 ? metalc ? metalc13 E CA CA . A CA 402 1_555 K O HOH . C HOH 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc14 F CA CA . A CA 403 1_555 I O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.035 ? metalc ? metalc15 F CA CA . A CA 403 1_555 I O HOH . A HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? metalc ? metalc16 F CA CA . A CA 403 1_555 J O HOH . B HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc17 F CA CA . A CA 403 1_555 J O HOH . B HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? metalc ? metalc18 F CA CA . A CA 403 1_555 C OD1 ASP 211 C ASP 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.193 ? metalc ? metalc19 F CA CA . A CA 403 1_555 K O HOH . C HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? metalc ? metalc20 B O GLU 33 B GLU 82 1_555 G CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc21 B O LEU 35 B LEU 84 1_555 G CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc22 B OE2 GLU 40 B GLU 89 1_555 G CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc23 C O GLU 33 C GLU 82 1_555 H CA CA . C CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc24 C O LEU 35 C LEU 84 1_555 H CA CA . C CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc25 C OE2 GLU 40 C GLU 89 1_555 H CA CA . C CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4IC5 _atom_sites.fract_transf_matrix[1][1] 0.009167 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002102 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00794 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012313 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CA A 1 401 1 CA CA . E 2 CA A 1 402 4 CA CA . F 2 CA A 1 403 5 CA CA . G 2 CA B 1 401 2 CA CA . H 2 CA C 1 401 3 CA CA . I 3 HOH A 1 501 6 HOH HOH . I 3 HOH A 2 502 7 HOH HOH . I 3 HOH A 3 503 9 HOH HOH . I 3 HOH A 4 504 13 HOH HOH . I 3 HOH A 5 505 15 HOH HOH . I 3 HOH A 6 506 17 HOH HOH . I 3 HOH A 7 507 18 HOH HOH . I 3 HOH A 8 508 19 HOH HOH . I 3 HOH A 9 509 23 HOH HOH . I 3 HOH A 10 510 25 HOH HOH . I 3 HOH A 11 511 27 HOH HOH . I 3 HOH A 12 512 31 HOH HOH . I 3 HOH A 13 513 38 HOH HOH . I 3 HOH A 14 514 42 HOH HOH . I 3 HOH A 15 515 43 HOH HOH . I 3 HOH A 16 516 45 HOH HOH . I 3 HOH A 17 517 48 HOH HOH . I 3 HOH A 18 518 53 HOH HOH . I 3 HOH A 19 519 54 HOH HOH . I 3 HOH A 20 520 57 HOH HOH . I 3 HOH A 21 521 64 HOH HOH . I 3 HOH A 22 522 67 HOH HOH . I 3 HOH A 23 523 71 HOH HOH . I 3 HOH A 24 524 72 HOH HOH . I 3 HOH A 25 525 73 HOH HOH . I 3 HOH A 26 526 78 HOH HOH . I 3 HOH A 27 527 79 HOH HOH . I 3 HOH A 28 528 84 HOH HOH . I 3 HOH A 29 529 89 HOH HOH . I 3 HOH A 30 530 90 HOH HOH . I 3 HOH A 31 531 95 HOH HOH . I 3 HOH A 32 532 100 HOH HOH . I 3 HOH A 33 533 102 HOH HOH . I 3 HOH A 34 534 109 HOH HOH . I 3 HOH A 35 535 115 HOH HOH . I 3 HOH A 36 536 131 HOH HOH . I 3 HOH A 37 537 137 HOH HOH . J 3 HOH B 1 501 1 HOH HOH . J 3 HOH B 2 502 5 HOH HOH . J 3 HOH B 3 503 10 HOH HOH . J 3 HOH B 4 504 11 HOH HOH . J 3 HOH B 5 505 20 HOH HOH . J 3 HOH B 6 506 21 HOH HOH . J 3 HOH B 7 507 24 HOH HOH . J 3 HOH B 8 508 26 HOH HOH . J 3 HOH B 9 509 28 HOH HOH . J 3 HOH B 10 510 33 HOH HOH . J 3 HOH B 11 511 35 HOH HOH . J 3 HOH B 12 512 37 HOH HOH . J 3 HOH B 13 513 40 HOH HOH . J 3 HOH B 14 514 41 HOH HOH . J 3 HOH B 15 515 47 HOH HOH . J 3 HOH B 16 516 52 HOH HOH . J 3 HOH B 17 517 59 HOH HOH . J 3 HOH B 18 518 62 HOH HOH . J 3 HOH B 19 519 65 HOH HOH . J 3 HOH B 20 520 66 HOH HOH . J 3 HOH B 21 521 76 HOH HOH . J 3 HOH B 22 522 77 HOH HOH . J 3 HOH B 23 523 80 HOH HOH . J 3 HOH B 24 524 86 HOH HOH . J 3 HOH B 25 525 88 HOH HOH . J 3 HOH B 26 526 96 HOH HOH . J 3 HOH B 27 527 99 HOH HOH . J 3 HOH B 28 528 107 HOH HOH . J 3 HOH B 29 529 108 HOH HOH . J 3 HOH B 30 530 110 HOH HOH . J 3 HOH B 31 531 111 HOH HOH . J 3 HOH B 32 532 113 HOH HOH . J 3 HOH B 33 533 114 HOH HOH . J 3 HOH B 34 534 116 HOH HOH . J 3 HOH B 35 535 117 HOH HOH . J 3 HOH B 36 536 118 HOH HOH . J 3 HOH B 37 537 119 HOH HOH . J 3 HOH B 38 538 120 HOH HOH . J 3 HOH B 39 539 127 HOH HOH . J 3 HOH B 40 540 128 HOH HOH . J 3 HOH B 41 541 129 HOH HOH . J 3 HOH B 42 542 132 HOH HOH . J 3 HOH B 43 543 133 HOH HOH . J 3 HOH B 44 544 134 HOH HOH . J 3 HOH B 45 545 135 HOH HOH . K 3 HOH C 1 501 2 HOH HOH . K 3 HOH C 2 502 3 HOH HOH . K 3 HOH C 3 503 4 HOH HOH . K 3 HOH C 4 504 8 HOH HOH . K 3 HOH C 5 505 12 HOH HOH . K 3 HOH C 6 506 14 HOH HOH . K 3 HOH C 7 507 22 HOH HOH . K 3 HOH C 8 508 29 HOH HOH . K 3 HOH C 9 509 30 HOH HOH . K 3 HOH C 10 510 32 HOH HOH . K 3 HOH C 11 511 36 HOH HOH . K 3 HOH C 12 512 39 HOH HOH . K 3 HOH C 13 513 44 HOH HOH . K 3 HOH C 14 514 46 HOH HOH . K 3 HOH C 15 515 49 HOH HOH . K 3 HOH C 16 516 50 HOH HOH . K 3 HOH C 17 517 51 HOH HOH . K 3 HOH C 18 518 55 HOH HOH . K 3 HOH C 19 519 56 HOH HOH . K 3 HOH C 20 520 58 HOH HOH . K 3 HOH C 21 521 60 HOH HOH . K 3 HOH C 22 522 61 HOH HOH . K 3 HOH C 23 523 63 HOH HOH . K 3 HOH C 24 524 69 HOH HOH . K 3 HOH C 25 525 70 HOH HOH . K 3 HOH C 26 526 74 HOH HOH . K 3 HOH C 27 527 75 HOH HOH . K 3 HOH C 28 528 81 HOH HOH . K 3 HOH C 29 529 82 HOH HOH . K 3 HOH C 30 530 83 HOH HOH . K 3 HOH C 31 531 85 HOH HOH . K 3 HOH C 32 532 87 HOH HOH . K 3 HOH C 33 533 92 HOH HOH . K 3 HOH C 34 534 93 HOH HOH . K 3 HOH C 35 535 94 HOH HOH . K 3 HOH C 36 536 97 HOH HOH . K 3 HOH C 37 537 98 HOH HOH . K 3 HOH C 38 538 101 HOH HOH . K 3 HOH C 39 539 103 HOH HOH . K 3 HOH C 40 540 104 HOH HOH . K 3 HOH C 41 541 105 HOH HOH . K 3 HOH C 42 542 106 HOH HOH . K 3 HOH C 43 543 121 HOH HOH . K 3 HOH C 44 544 122 HOH HOH . K 3 HOH C 45 545 123 HOH HOH . K 3 HOH C 46 546 124 HOH HOH . K 3 HOH C 47 547 125 HOH HOH . K 3 HOH C 48 548 126 HOH HOH . K 3 HOH C 49 549 136 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x -1.835 _atom_site.Cartn_y 31.521 _atom_site.Cartn_z 0.848 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #