data_4IC7 # _model_server_result.job_id dJLPvXpl8IwTBNo7O9ZGmw _model_server_result.datetime_utc '2024-12-21 12:39:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ic7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 4IC7 # _exptl.entry_id 4IC7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IC7 _cell.length_a 69.37 _cell.length_b 69.37 _cell.length_c 271.24 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IC7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,G,J 1 1 B,C,F,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4IC7 _atom_sites.fract_transf_matrix[1][1] 0.014415 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014415 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003687 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ANP A 1 501 1 ANP ANP . F 3 ANP D 1 501 1 ANP ANP . G 4 HOH A 1 601 1 HOH HOH . G 4 HOH A 2 602 4 HOH HOH . G 4 HOH A 3 603 5 HOH HOH . G 4 HOH A 4 604 7 HOH HOH . G 4 HOH A 5 605 8 HOH HOH . G 4 HOH A 6 606 11 HOH HOH . G 4 HOH A 7 607 15 HOH HOH . G 4 HOH A 8 608 16 HOH HOH . G 4 HOH A 9 609 17 HOH HOH . G 4 HOH A 10 610 19 HOH HOH . G 4 HOH A 11 611 20 HOH HOH . G 4 HOH A 12 612 21 HOH HOH . G 4 HOH A 13 613 22 HOH HOH . G 4 HOH A 14 614 23 HOH HOH . G 4 HOH A 15 615 24 HOH HOH . G 4 HOH A 16 616 25 HOH HOH . G 4 HOH A 17 617 26 HOH HOH . G 4 HOH A 18 618 30 HOH HOH . G 4 HOH A 19 619 35 HOH HOH . G 4 HOH A 20 620 37 HOH HOH . G 4 HOH A 21 621 42 HOH HOH . G 4 HOH A 22 622 44 HOH HOH . G 4 HOH A 23 623 45 HOH HOH . G 4 HOH A 24 624 47 HOH HOH . G 4 HOH A 25 625 49 HOH HOH . G 4 HOH A 26 626 53 HOH HOH . G 4 HOH A 27 627 54 HOH HOH . G 4 HOH A 28 628 57 HOH HOH . G 4 HOH A 29 629 58 HOH HOH . G 4 HOH A 30 630 59 HOH HOH . G 4 HOH A 31 631 64 HOH HOH . G 4 HOH A 32 632 66 HOH HOH . G 4 HOH A 33 633 67 HOH HOH . G 4 HOH A 34 634 80 HOH HOH . G 4 HOH A 35 635 81 HOH HOH . G 4 HOH A 36 636 83 HOH HOH . H 4 HOH D 1 601 2 HOH HOH . H 4 HOH D 2 602 6 HOH HOH . H 4 HOH D 3 603 9 HOH HOH . H 4 HOH D 4 604 10 HOH HOH . H 4 HOH D 5 605 12 HOH HOH . H 4 HOH D 6 606 13 HOH HOH . H 4 HOH D 7 607 14 HOH HOH . H 4 HOH D 8 608 18 HOH HOH . H 4 HOH D 9 609 27 HOH HOH . H 4 HOH D 10 610 31 HOH HOH . H 4 HOH D 11 611 32 HOH HOH . H 4 HOH D 12 612 33 HOH HOH . H 4 HOH D 13 613 41 HOH HOH . H 4 HOH D 14 614 46 HOH HOH . H 4 HOH D 15 615 48 HOH HOH . H 4 HOH D 16 616 51 HOH HOH . H 4 HOH D 17 617 52 HOH HOH . H 4 HOH D 18 618 55 HOH HOH . H 4 HOH D 19 619 56 HOH HOH . H 4 HOH D 20 620 60 HOH HOH . H 4 HOH D 21 621 61 HOH HOH . H 4 HOH D 22 622 62 HOH HOH . H 4 HOH D 23 623 63 HOH HOH . H 4 HOH D 24 624 69 HOH HOH . H 4 HOH D 25 625 70 HOH HOH . H 4 HOH D 26 626 73 HOH HOH . H 4 HOH D 27 627 74 HOH HOH . H 4 HOH D 28 628 76 HOH HOH . H 4 HOH D 29 629 77 HOH HOH . H 4 HOH D 30 630 78 HOH HOH . H 4 HOH D 31 631 79 HOH HOH . H 4 HOH D 32 632 82 HOH HOH . I 4 HOH E 1 201 3 HOH HOH . I 4 HOH E 2 202 28 HOH HOH . I 4 HOH E 3 203 29 HOH HOH . I 4 HOH E 4 204 36 HOH HOH . I 4 HOH E 5 205 38 HOH HOH . I 4 HOH E 6 206 39 HOH HOH . I 4 HOH E 7 207 50 HOH HOH . I 4 HOH E 8 208 68 HOH HOH . I 4 HOH E 9 209 72 HOH HOH . I 4 HOH E 10 210 75 HOH HOH . J 4 HOH B 1 201 34 HOH HOH . J 4 HOH B 2 202 40 HOH HOH . J 4 HOH B 3 203 43 HOH HOH . J 4 HOH B 4 204 65 HOH HOH . J 4 HOH B 5 205 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . F 3 -9.755 4.268 -25.602 1 183.74 ? PG ANP 501 D 1 HETATM 2 O O1G ANP . . . F 3 -9.261 2.873 -25.405 1 184.35 ? O1G ANP 501 D 1 HETATM 3 O O2G ANP . . . F 3 -10.846 4.302 -26.712 1 173 ? O2G ANP 501 D 1 HETATM 4 O O3G ANP . . . F 3 -8.531 5.203 -26.037 1 90.88 ? O3G ANP 501 D 1 HETATM 5 P PB ANP . . . F 3 -12.019 4.124 -24.023 1 159.39 ? PB ANP 501 D 1 HETATM 6 O O1B ANP . . . F 3 -11.788 3.704 -22.509 1 213.66 ? O1B ANP 501 D 1 HETATM 7 O O2B ANP . . . F 3 -12.467 3.041 -25.072 1 233.96 ? O2B ANP 501 D 1 HETATM 8 N N3B ANP . . . F 3 -10.469 4.896 -24.258 1 278.71 ? N3B ANP 501 D 1 HETATM 9 P PA ANP . . . F 3 -12.29 6.427 -22.763 1 157.03 ? PA ANP 501 D 1 HETATM 10 O O1A ANP . . . F 3 -10.847 6.801 -23.119 1 154.86 ? O1A ANP 501 D 1 HETATM 11 O O2A ANP . . . F 3 -12.31 5.708 -21.468 1 157.98 ? O2A ANP 501 D 1 HETATM 12 O O3A ANP . . . F 3 -12.887 5.39 -23.742 1 113.86 ? O3A ANP 501 D 1 HETATM 13 O O5' ANP . . . F 3 -13.237 7.65 -22.678 1 114.07 ? O5' ANP 501 D 1 HETATM 14 C C5' ANP . . . F 3 -13.251 8.54 -23.755 1 118.64 ? C5' ANP 501 D 1 HETATM 15 C C4' ANP . . . F 3 -12.631 9.837 -23.551 1 121.81 ? C4' ANP 501 D 1 HETATM 16 O O4' ANP . . . F 3 -13.49 10.639 -22.846 1 121.7 ? O4' ANP 501 D 1 HETATM 17 C C3' ANP . . . F 3 -11.495 9.734 -22.642 1 123.41 ? C3' ANP 501 D 1 HETATM 18 O O3' ANP . . . F 3 -10.359 9.243 -23.22 1 124.05 ? O3' ANP 501 D 1 HETATM 19 C C2' ANP . . . F 3 -11.338 11.077 -22.265 1 122.58 ? C2' ANP 501 D 1 HETATM 20 O O2' ANP . . . F 3 -10.861 11.861 -23.282 1 121.18 ? O2' ANP 501 D 1 HETATM 21 C C1' ANP . . . F 3 -12.716 11.414 -21.949 1 121.11 ? C1' ANP 501 D 1 HETATM 22 N N9 ANP . . . F 3 -12.96 10.986 -20.565 1 115.26 ? N9 ANP 501 D 1 HETATM 23 C C8 ANP . . . F 3 -12.801 9.742 -20.103 1 112.42 ? C8 ANP 501 D 1 HETATM 24 N N7 ANP . . . F 3 -13.086 9.744 -18.814 1 114.27 ? N7 ANP 501 D 1 HETATM 25 C C5 ANP . . . F 3 -13.408 10.991 -18.432 1 111.31 ? C5 ANP 501 D 1 HETATM 26 C C6 ANP . . . F 3 -13.771 11.558 -17.215 1 104.75 ? C6 ANP 501 D 1 HETATM 27 N N6 ANP . . . F 3 -13.859 10.745 -16.045 1 100.61 ? N6 ANP 501 D 1 HETATM 28 N N1 ANP . . . F 3 -14.035 12.857 -17.149 1 104.17 ? N1 ANP 501 D 1 HETATM 29 C C2 ANP . . . F 3 -13.943 13.595 -18.254 1 107.49 ? C2 ANP 501 D 1 HETATM 30 N N3 ANP . . . F 3 -13.596 13.1 -19.452 1 108.85 ? N3 ANP 501 D 1 HETATM 31 C C4 ANP . . . F 3 -13.321 11.791 -19.555 1 111.07 ? C4 ANP 501 D 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #