data_4ICY # _model_server_result.job_id 99pBBKrG9hkw3KHL4O_NrQ _model_server_result.datetime_utc '2025-03-11 11:23:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4icy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4ICY # _exptl.entry_id 4ICY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4ICY _cell.length_a 65.97 _cell.length_b 171.04 _cell.length_c 212.88 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ICY _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 65.97 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 92 n n PA O2A FAD sing 93 n n PA O5B FAD sing 94 n n PA O3P FAD sing 95 n n O2A HOA2 FAD sing 96 n n O5B C5B FAD sing 97 n n C5B C4B FAD sing 98 n n C5B H51A FAD sing 99 n n C5B H52A FAD sing 100 n n C4B O4B FAD sing 101 n n C4B C3B FAD sing 102 n n C4B H4B FAD sing 103 n n O4B C1B FAD sing 104 n n C3B O3B FAD sing 105 n n C3B C2B FAD sing 106 n n C3B H3B FAD sing 107 n n O3B HO3A FAD sing 108 n n C2B O2B FAD sing 109 n n C2B C1B FAD sing 110 n n C2B H2B FAD sing 111 n n O2B HO2A FAD sing 112 n n C1B N9A FAD sing 113 n n C1B H1B FAD sing 114 n n N9A C8A FAD sing 115 n y N9A C4A FAD sing 116 n y C8A N7A FAD doub 117 n y C8A H8A FAD sing 118 n n N7A C5A FAD sing 119 n y C5A C6A FAD sing 120 n y C5A C4A FAD doub 121 n y C6A N6A FAD sing 122 n n C6A N1A FAD doub 123 n y N6A H61A FAD sing 124 n n N6A H62A FAD sing 125 n n N1A C2A FAD sing 126 n y C2A N3A FAD doub 127 n y C2A H2A FAD sing 128 n n N3A C4A FAD sing 129 n y N1 C2 FAD sing 130 n n N1 C10 FAD doub 131 n n C2 O2 FAD doub 132 n n C2 N3 FAD sing 133 n n N3 C4 FAD sing 134 n n N3 HN3 FAD sing 135 n n C4 O4 FAD doub 136 n n C4 C4X FAD sing 137 n n C4X N5 FAD doub 138 n n C4X C10 FAD sing 139 n n N5 C5X FAD sing 140 n n C5X C6 FAD doub 141 n y C5X C9A FAD sing 142 n y C6 C7 FAD sing 143 n y C6 H6 FAD sing 144 n n C7 C7M FAD sing 145 n n C7 C8 FAD doub 146 n y C7M HM71 FAD sing 147 n n C7M HM72 FAD sing 148 n n C7M HM73 FAD sing 149 n n C8 C8M FAD sing 150 n n C8 C9 FAD sing 151 n y C8M HM81 FAD sing 152 n n C8M HM82 FAD sing 153 n n C8M HM83 FAD sing 154 n n C9 C9A FAD doub 155 n y C9 H9 FAD sing 156 n n C9A N10 FAD sing 157 n n N10 C10 FAD sing 158 n n N10 C1' FAD sing 159 n n C1' C2' FAD sing 160 n n C1' "H1'1" FAD sing 161 n n C1' "H1'2" FAD sing 162 n n C2' O2' FAD sing 163 n n C2' C3' FAD sing 164 n n C2' H2' FAD sing 165 n n O2' HO2' FAD sing 166 n n C3' O3' FAD sing 167 n n C3' C4' FAD sing 168 n n C3' H3' FAD sing 169 n n O3' HO3' FAD sing 170 n n C4' O4' FAD sing 171 n n C4' C5' FAD sing 172 n n C4' H4' FAD sing 173 n n O4' HO4' FAD sing 174 n n C5' O5' FAD sing 175 n n C5' "H5'1" FAD sing 176 n n C5' "H5'2" FAD sing 177 n n O5' P FAD sing 178 n n P O1P FAD doub 179 n n P O2P FAD sing 180 n n P O3P FAD sing 181 n n O2P HOP2 FAD sing 182 n n # _atom_sites.entry_id 4ICY _atom_sites.fract_transf_matrix[1][1] 0.015158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005847 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004697 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 501 1 FAD FAD . C 3 EDO A 1 502 1 EDO EDO . D 3 EDO A 1 503 2 EDO EDO . E 4 GOL A 1 504 3 GOL GOL . F 4 GOL A 1 505 4 GOL GOL . G 3 EDO A 1 506 5 EDO EDO . H 5 SO4 A 1 507 6 SO4 SO4 . I 5 SO4 A 1 508 7 SO4 SO4 . J 3 EDO A 1 509 8 EDO EDO . K 6 CL A 1 510 9 CL CL . L 6 CL A 1 511 10 CL CL . M 7 HOH A 1 601 1 HOH HOH . M 7 HOH A 2 602 2 HOH HOH . M 7 HOH A 3 603 3 HOH HOH . M 7 HOH A 4 604 4 HOH HOH . M 7 HOH A 5 605 5 HOH HOH . M 7 HOH A 6 606 6 HOH HOH . M 7 HOH A 7 607 7 HOH HOH . M 7 HOH A 8 608 8 HOH HOH . M 7 HOH A 9 609 9 HOH HOH . M 7 HOH A 10 610 10 HOH HOH . M 7 HOH A 11 611 11 HOH HOH . M 7 HOH A 12 612 12 HOH HOH . M 7 HOH A 13 613 13 HOH HOH . M 7 HOH A 14 614 14 HOH HOH . M 7 HOH A 15 615 15 HOH HOH . M 7 HOH A 16 616 16 HOH HOH . M 7 HOH A 17 617 17 HOH HOH . M 7 HOH A 18 618 18 HOH HOH . M 7 HOH A 19 619 19 HOH HOH . M 7 HOH A 20 620 20 HOH HOH . M 7 HOH A 21 621 21 HOH HOH . M 7 HOH A 22 622 22 HOH HOH . M 7 HOH A 23 623 23 HOH HOH . M 7 HOH A 24 624 24 HOH HOH . M 7 HOH A 25 625 25 HOH HOH . M 7 HOH A 26 626 26 HOH HOH . M 7 HOH A 27 627 27 HOH HOH . M 7 HOH A 28 628 28 HOH HOH . M 7 HOH A 29 629 29 HOH HOH . M 7 HOH A 30 630 30 HOH HOH . M 7 HOH A 31 631 31 HOH HOH . M 7 HOH A 32 632 32 HOH HOH . M 7 HOH A 33 633 33 HOH HOH . M 7 HOH A 34 634 34 HOH HOH . M 7 HOH A 35 635 35 HOH HOH . M 7 HOH A 36 636 36 HOH HOH . M 7 HOH A 37 637 37 HOH HOH . M 7 HOH A 38 638 38 HOH HOH . M 7 HOH A 39 639 39 HOH HOH . M 7 HOH A 40 640 40 HOH HOH . M 7 HOH A 41 641 41 HOH HOH . M 7 HOH A 42 642 42 HOH HOH . M 7 HOH A 43 643 43 HOH HOH . M 7 HOH A 44 644 44 HOH HOH . M 7 HOH A 45 645 45 HOH HOH . M 7 HOH A 46 646 46 HOH HOH . M 7 HOH A 47 647 47 HOH HOH . M 7 HOH A 48 648 48 HOH HOH . M 7 HOH A 49 649 49 HOH HOH . M 7 HOH A 50 650 50 HOH HOH . M 7 HOH A 51 651 51 HOH HOH . M 7 HOH A 52 652 52 HOH HOH . M 7 HOH A 53 653 53 HOH HOH . M 7 HOH A 54 654 54 HOH HOH . M 7 HOH A 55 655 55 HOH HOH . M 7 HOH A 56 656 56 HOH HOH . M 7 HOH A 57 657 57 HOH HOH . M 7 HOH A 58 658 58 HOH HOH . M 7 HOH A 59 659 59 HOH HOH . M 7 HOH A 60 660 60 HOH HOH . M 7 HOH A 61 661 61 HOH HOH . M 7 HOH A 62 662 62 HOH HOH . M 7 HOH A 63 663 63 HOH HOH . M 7 HOH A 64 664 64 HOH HOH . M 7 HOH A 65 665 65 HOH HOH . M 7 HOH A 66 666 66 HOH HOH . M 7 HOH A 67 667 67 HOH HOH . M 7 HOH A 68 668 68 HOH HOH . M 7 HOH A 69 669 69 HOH HOH . M 7 HOH A 70 670 70 HOH HOH . M 7 HOH A 71 671 71 HOH HOH . M 7 HOH A 72 672 72 HOH HOH . M 7 HOH A 73 673 73 HOH HOH . M 7 HOH A 74 674 74 HOH HOH . M 7 HOH A 75 675 75 HOH HOH . M 7 HOH A 76 676 76 HOH HOH . M 7 HOH A 77 677 77 HOH HOH . M 7 HOH A 78 678 78 HOH HOH . M 7 HOH A 79 679 79 HOH HOH . M 7 HOH A 80 680 80 HOH HOH . M 7 HOH A 81 681 81 HOH HOH . M 7 HOH A 82 682 82 HOH HOH . M 7 HOH A 83 683 83 HOH HOH . M 7 HOH A 84 684 84 HOH HOH . M 7 HOH A 85 685 85 HOH HOH . M 7 HOH A 86 686 86 HOH HOH . M 7 HOH A 87 687 87 HOH HOH . M 7 HOH A 88 688 88 HOH HOH . M 7 HOH A 89 689 89 HOH HOH . M 7 HOH A 90 690 90 HOH HOH . M 7 HOH A 91 691 91 HOH HOH . M 7 HOH A 92 692 92 HOH HOH . M 7 HOH A 93 693 93 HOH HOH . M 7 HOH A 94 694 94 HOH HOH . M 7 HOH A 95 695 95 HOH HOH . M 7 HOH A 96 696 96 HOH HOH . M 7 HOH A 97 697 97 HOH HOH . M 7 HOH A 98 698 98 HOH HOH . M 7 HOH A 99 699 99 HOH HOH . M 7 HOH A 100 700 100 HOH HOH . M 7 HOH A 101 701 101 HOH HOH . M 7 HOH A 102 702 102 HOH HOH . M 7 HOH A 103 703 103 HOH HOH . M 7 HOH A 104 704 104 HOH HOH . M 7 HOH A 105 705 105 HOH HOH . M 7 HOH A 106 706 106 HOH HOH . M 7 HOH A 107 707 107 HOH HOH . M 7 HOH A 108 708 108 HOH HOH . M 7 HOH A 109 709 109 HOH HOH . M 7 HOH A 110 710 110 HOH HOH . M 7 HOH A 111 711 111 HOH HOH . M 7 HOH A 112 712 112 HOH HOH . M 7 HOH A 113 713 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 25.179 28.706 15.045 1 37.43 ? PA FAD 501 A 1 HETATM 2 O O1A FAD . . . B 2 23.977 28.22 15.762 1 33.21 ? O1A FAD 501 A 1 HETATM 3 O O2A FAD . . . B 2 25.499 28.145 13.664 1 42.04 ? O2A FAD 501 A 1 HETATM 4 O O5B FAD . . . B 2 25.027 30.293 14.848 1 38.43 ? O5B FAD 501 A 1 HETATM 5 C C5B FAD . . . B 2 26.034 31.009 14.142 1 39.1 ? C5B FAD 501 A 1 HETATM 6 C C4B FAD . . . B 2 25.357 32.279 13.668 1 41.56 ? C4B FAD 501 A 1 HETATM 7 O O4B FAD . . . B 2 26.278 33.115 12.982 1 43.38 ? O4B FAD 501 A 1 HETATM 8 C C3B FAD . . . B 2 24.244 31.994 12.688 1 41.42 ? C3B FAD 501 A 1 HETATM 9 O O3B FAD . . . B 2 23.063 32.531 13.279 1 42.38 ? O3B FAD 501 A 1 HETATM 10 C C2B FAD . . . B 2 24.649 32.723 11.406 1 41.57 ? C2B FAD 501 A 1 HETATM 11 O O2B FAD . . . B 2 23.565 33.335 10.718 1 39.82 ? O2B FAD 501 A 1 HETATM 12 C C1B FAD . . . B 2 25.61 33.765 11.898 1 44.15 ? C1B FAD 501 A 1 HETATM 13 N N9A FAD . . . B 2 26.63 34.106 10.887 1 47.6 ? N9A FAD 501 A 1 HETATM 14 C C8A FAD . . . B 2 27.317 33.234 10.13 1 46.61 ? C8A FAD 501 A 1 HETATM 15 N N7A FAD . . . B 2 28.214 33.882 9.338 1 49.54 ? N7A FAD 501 A 1 HETATM 16 C C5A FAD . . . B 2 28.101 35.197 9.587 1 48.99 ? C5A FAD 501 A 1 HETATM 17 C C6A FAD . . . B 2 28.743 36.431 9.091 1 49.84 ? C6A FAD 501 A 1 HETATM 18 N N6A FAD . . . B 2 29.713 36.394 8.133 1 49.31 ? N6A FAD 501 A 1 HETATM 19 N N1A FAD . . . B 2 28.334 37.6 9.644 1 51.43 ? N1A FAD 501 A 1 HETATM 20 C C2A FAD . . . B 2 27.375 37.656 10.593 1 51.13 ? C2A FAD 501 A 1 HETATM 21 N N3A FAD . . . B 2 26.754 36.567 11.084 1 48.78 ? N3A FAD 501 A 1 HETATM 22 C C4A FAD . . . B 2 27.064 35.337 10.626 1 47.73 ? C4A FAD 501 A 1 HETATM 23 N N1 FAD . . . B 2 23.259 20.582 19.842 1 41.66 ? N1 FAD 501 A 1 HETATM 24 C C2 FAD . . . B 2 22.866 20.189 21.093 1 42.44 ? C2 FAD 501 A 1 HETATM 25 O O2 FAD . . . B 2 23.45 20.654 22.092 1 44.46 ? O2 FAD 501 A 1 HETATM 26 N N3 FAD . . . B 2 21.868 19.318 21.317 1 42.66 ? N3 FAD 501 A 1 HETATM 27 C C4 FAD . . . B 2 21.176 18.762 20.301 1 46.54 ? C4 FAD 501 A 1 HETATM 28 O O4 FAD . . . B 2 20.249 17.945 20.528 1 46.67 ? O4 FAD 501 A 1 HETATM 29 C C4X FAD . . . B 2 21.534 19.129 18.902 1 43.1 ? C4X FAD 501 A 1 HETATM 30 N N5 FAD . . . B 2 20.863 18.596 17.859 1 42.07 ? N5 FAD 501 A 1 HETATM 31 C C5X FAD . . . B 2 21.194 18.941 16.59 1 43.65 ? C5X FAD 501 A 1 HETATM 32 C C6 FAD . . . B 2 20.481 18.362 15.543 1 43.01 ? C6 FAD 501 A 1 HETATM 33 C C7 FAD . . . B 2 20.791 18.684 14.222 1 46.41 ? C7 FAD 501 A 1 HETATM 34 C C7M FAD . . . B 2 20.01 18.06 13.076 1 46.21 ? C7M FAD 501 A 1 HETATM 35 C C8 FAD . . . B 2 21.889 19.66 13.943 1 46.66 ? C8 FAD 501 A 1 HETATM 36 C C8M FAD . . . B 2 22.235 20.033 12.515 1 46.22 ? C8M FAD 501 A 1 HETATM 37 C C9 FAD . . . B 2 22.6 20.242 14.997 1 44 ? C9 FAD 501 A 1 HETATM 38 C C9A FAD . . . B 2 22.304 19.926 16.323 1 43.1 ? C9A FAD 501 A 1 HETATM 39 N N10 FAD . . . B 2 23.036 20.51 17.409 1 42 ? N10 FAD 501 A 1 HETATM 40 C C10 FAD . . . B 2 22.65 20.109 18.719 1 41.85 ? C10 FAD 501 A 1 HETATM 41 C C1' FAD . . . B 2 24.116 21.524 17.203 1 40.69 ? C1' FAD 501 A 1 HETATM 42 C C2' FAD . . . B 2 23.461 22.918 17.438 1 36.89 ? C2' FAD 501 A 1 HETATM 43 O O2' FAD . . . B 2 22.41 23.113 16.494 1 42.19 ? O2' FAD 501 A 1 HETATM 44 C C3' FAD . . . B 2 24.232 24.277 17.598 1 39.74 ? C3' FAD 501 A 1 HETATM 45 O O3' FAD . . . B 2 23.675 25.488 17.007 1 34.38 ? O3' FAD 501 A 1 HETATM 46 C C4' FAD . . . B 2 25.69 24.319 17.254 1 40.77 ? C4' FAD 501 A 1 HETATM 47 O O4' FAD . . . B 2 26.22 23.077 17.769 1 38.44 ? O4' FAD 501 A 1 HETATM 48 C C5' FAD . . . B 2 26.341 25.582 17.916 1 40.66 ? C5' FAD 501 A 1 HETATM 49 O O5' FAD . . . B 2 25.753 26.897 17.675 1 38.92 ? O5' FAD 501 A 1 HETATM 50 P P FAD . . . B 2 26.647 28.272 17.468 1 36.48 ? P FAD 501 A 1 HETATM 51 O O1P FAD . . . B 2 26.014 29.443 18.153 1 40.46 ? O1P FAD 501 A 1 HETATM 52 O O2P FAD . . . B 2 28.127 28.089 17.745 1 35.97 ? O2P FAD 501 A 1 HETATM 53 O O3P FAD . . . B 2 26.551 28.526 15.886 1 36.88 ? O3P FAD 501 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 53 #