data_4ID2
#
_model_server_result.job_id            p14wsshjXoTXitU3AFtMGg 
_model_server_result.datetime_utc      '2025-09-12 23:45:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4id2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    4ID2 
#
_exptl.entry_id    4ID2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.31 
_cell.angle_gamma         90 
_cell.entry_id            4ID2 
_cell.length_a            67.254 
_cell.length_b            74.421 
_cell.length_c            71.206 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4ID2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 28 A ARG 45 1_555 A N MSE 29 A MSE 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 A C MSE 29 A MSE 46 1_555 A N GLN 30 A GLN 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale3 A C TYR 135 A TYR 152 1_555 A N MSE 136 A MSE 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale4 A C MSE 136 A MSE 153 1_555 A N PRO 137 A PRO 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale5 A C LYS 147 A LYS 164 1_555 A N MSE 148 A MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale6 A C MSE 148 A MSE 165 1_555 A N SER 149 A SER 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale7 B C ARG 28 B ARG 45 1_555 B N MSE 29 B MSE 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? 
covale ? covale8 B C MSE 29 B MSE 46 1_555 B N GLN 30 B GLN 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale9 B C TYR 135 B TYR 152 1_555 B N MSE 136 B MSE 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale10 B C MSE 136 B MSE 153 1_555 B N PRO 137 B PRO 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale11 B C LYS 147 B LYS 164 1_555 B N MSE 148 B MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale12 B C MSE 148 B MSE 165 1_555 B N SER 149 B SER 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     4ID2 
_atom_sites.fract_transf_matrix[1][1]    0.014869 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007678 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013437 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015805 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 201 200 SO4 SO4 . 
D 3 EDO A 1 202 202 EDO EDO . 
E 3 EDO B 1 201 201 EDO EDO . 
F 4 HOH A 1 301 203 HOH HOH . 
F 4 HOH A 2 302 206 HOH HOH . 
F 4 HOH A 3 303 207 HOH HOH . 
F 4 HOH A 4 304 209 HOH HOH . 
F 4 HOH A 5 305 210 HOH HOH . 
F 4 HOH A 6 306 211 HOH HOH . 
F 4 HOH A 7 307 212 HOH HOH . 
F 4 HOH A 8 308 213 HOH HOH . 
F 4 HOH A 9 309 215 HOH HOH . 
F 4 HOH A 10 310 218 HOH HOH . 
F 4 HOH A 11 311 220 HOH HOH . 
F 4 HOH A 12 312 222 HOH HOH . 
F 4 HOH A 13 313 223 HOH HOH . 
F 4 HOH A 14 314 224 HOH HOH . 
F 4 HOH A 15 315 235 HOH HOH . 
F 4 HOH A 16 316 237 HOH HOH . 
F 4 HOH A 17 317 239 HOH HOH . 
F 4 HOH A 18 318 240 HOH HOH . 
F 4 HOH A 19 319 243 HOH HOH . 
F 4 HOH A 20 320 246 HOH HOH . 
F 4 HOH A 21 321 251 HOH HOH . 
F 4 HOH A 22 322 252 HOH HOH . 
F 4 HOH A 23 323 253 HOH HOH . 
F 4 HOH A 24 324 254 HOH HOH . 
F 4 HOH A 25 325 257 HOH HOH . 
F 4 HOH A 26 326 260 HOH HOH . 
F 4 HOH A 27 327 265 HOH HOH . 
F 4 HOH A 28 328 266 HOH HOH . 
F 4 HOH A 29 329 268 HOH HOH . 
F 4 HOH A 30 330 270 HOH HOH . 
F 4 HOH A 31 331 273 HOH HOH . 
F 4 HOH A 32 332 274 HOH HOH . 
F 4 HOH A 33 333 275 HOH HOH . 
F 4 HOH A 34 334 276 HOH HOH . 
F 4 HOH A 35 335 277 HOH HOH . 
F 4 HOH A 36 336 279 HOH HOH . 
F 4 HOH A 37 337 280 HOH HOH . 
F 4 HOH A 38 338 284 HOH HOH . 
F 4 HOH A 39 339 287 HOH HOH . 
F 4 HOH A 40 340 288 HOH HOH . 
F 4 HOH A 41 341 290 HOH HOH . 
F 4 HOH A 42 342 291 HOH HOH . 
F 4 HOH A 43 343 294 HOH HOH . 
F 4 HOH A 44 344 298 HOH HOH . 
F 4 HOH A 45 345 299 HOH HOH . 
F 4 HOH A 46 346 302 HOH HOH . 
F 4 HOH A 47 347 303 HOH HOH . 
F 4 HOH A 48 348 304 HOH HOH . 
F 4 HOH A 49 349 305 HOH HOH . 
F 4 HOH A 50 350 310 HOH HOH . 
F 4 HOH A 51 351 311 HOH HOH . 
G 4 HOH B 1 301 204 HOH HOH . 
G 4 HOH B 2 302 205 HOH HOH . 
G 4 HOH B 3 303 208 HOH HOH . 
G 4 HOH B 4 304 214 HOH HOH . 
G 4 HOH B 5 305 216 HOH HOH . 
G 4 HOH B 6 306 217 HOH HOH . 
G 4 HOH B 7 307 219 HOH HOH . 
G 4 HOH B 8 308 221 HOH HOH . 
G 4 HOH B 9 309 225 HOH HOH . 
G 4 HOH B 10 310 226 HOH HOH . 
G 4 HOH B 11 311 227 HOH HOH . 
G 4 HOH B 12 312 228 HOH HOH . 
G 4 HOH B 13 313 229 HOH HOH . 
G 4 HOH B 14 314 230 HOH HOH . 
G 4 HOH B 15 315 231 HOH HOH . 
G 4 HOH B 16 316 232 HOH HOH . 
G 4 HOH B 17 317 233 HOH HOH . 
G 4 HOH B 18 318 234 HOH HOH . 
G 4 HOH B 19 319 236 HOH HOH . 
G 4 HOH B 20 320 238 HOH HOH . 
G 4 HOH B 21 321 241 HOH HOH . 
G 4 HOH B 22 322 242 HOH HOH . 
G 4 HOH B 23 323 244 HOH HOH . 
G 4 HOH B 24 324 245 HOH HOH . 
G 4 HOH B 25 325 247 HOH HOH . 
G 4 HOH B 26 326 248 HOH HOH . 
G 4 HOH B 27 327 249 HOH HOH . 
G 4 HOH B 28 328 250 HOH HOH . 
G 4 HOH B 29 329 255 HOH HOH . 
G 4 HOH B 30 330 256 HOH HOH . 
G 4 HOH B 31 331 258 HOH HOH . 
G 4 HOH B 32 332 259 HOH HOH . 
G 4 HOH B 33 333 261 HOH HOH . 
G 4 HOH B 34 334 262 HOH HOH . 
G 4 HOH B 35 335 263 HOH HOH . 
G 4 HOH B 36 336 264 HOH HOH . 
G 4 HOH B 37 337 267 HOH HOH . 
G 4 HOH B 38 338 269 HOH HOH . 
G 4 HOH B 39 339 271 HOH HOH . 
G 4 HOH B 40 340 272 HOH HOH . 
G 4 HOH B 41 341 278 HOH HOH . 
G 4 HOH B 42 342 281 HOH HOH . 
G 4 HOH B 43 343 282 HOH HOH . 
G 4 HOH B 44 344 283 HOH HOH . 
G 4 HOH B 45 345 285 HOH HOH . 
G 4 HOH B 46 346 286 HOH HOH . 
G 4 HOH B 47 347 289 HOH HOH . 
G 4 HOH B 48 348 292 HOH HOH . 
G 4 HOH B 49 349 293 HOH HOH . 
G 4 HOH B 50 350 295 HOH HOH . 
G 4 HOH B 51 351 296 HOH HOH . 
G 4 HOH B 52 352 297 HOH HOH . 
G 4 HOH B 53 353 300 HOH HOH . 
G 4 HOH B 54 354 301 HOH HOH . 
G 4 HOH B 55 355 306 HOH HOH . 
G 4 HOH B 56 356 307 HOH HOH . 
G 4 HOH B 57 357 308 HOH HOH . 
G 4 HOH B 58 358 309 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 17.087 12.66 12.074 1 91.28 ? C1 EDO 202 A 1 
HETATM 2 O O1 EDO . . . D 3 16.459 13.671 11.304 1 91.31 ? O1 EDO 202 A 1 
HETATM 3 C C2 EDO . . . D 3 17.607 11.559 11.129 1 91.27 ? C2 EDO 202 A 1 
HETATM 4 O O2 EDO . . . D 3 16.535 11.078 10.331 1 91.47 ? O2 EDO 202 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           226 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           4 
#