data_4IDV
#
_model_server_result.job_id            V9Kele5LnueRCo2hJT3mmA 
_model_server_result.datetime_utc      '2024-11-22 22:51:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4idv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":701}' 
#
_entry.id    4IDV 
#
_exptl.entry_id    4IDV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              366.414 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-{3-[2-amino-5-(2-methoxyethoxy)pyrimidin-4-yl]-1H-indol-5-yl}-2-methylbut-3-yn-2-ol 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4IDV 
_cell.length_a            45.378 
_cell.length_b            146.014 
_cell.length_c            254.701 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4IDV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,I 1 1 
B,F,J 2 1 
C,G,K 3 1 
D,H,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C20 H22 N4 O3' 
_chem_comp.formula_weight    366.414 
_chem_comp.id                13V 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-{3-[2-amino-5-(2-methoxyethoxy)pyrimidin-4-yl]-1H-indol-5-yl}-2-methylbut-3-yn-2-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C20 O3 13V sing 1 n n 
O3 C19 13V sing 2 n n 
C19 C18 13V sing 3 n n 
C18 O2 13V sing 4 n n 
N1 C10 13V sing 5 n y 
N1 C9 13V sing 6 n y 
C10 C11 13V doub 7 n y 
C8 C9 13V doub 8 n y 
C8 C7 13V sing 9 n y 
C9 C12 13V sing 10 n y 
O2 C17 13V sing 11 n n 
C11 C12 13V sing 12 n y 
C11 C14 13V sing 13 n n 
C7 C6 13V doub 14 n y 
C17 C14 13V doub 15 n y 
C17 C16 13V sing 16 n y 
C12 C13 13V doub 17 n y 
C14 N2 13V sing 18 n y 
C16 N4 13V doub 19 n y 
C6 C13 13V sing 20 n y 
C6 C5 13V sing 21 n n 
N2 C15 13V doub 22 n y 
N4 C15 13V sing 23 n y 
C5 C4 13V trip 24 n n 
C15 N3 13V sing 25 n n 
O1 C1 13V sing 26 n n 
C2 C1 13V sing 27 n n 
C4 C1 13V sing 28 n n 
C1 C3 13V sing 29 n n 
N3 H1 13V sing 30 n n 
N3 H2 13V sing 31 n n 
C16 H3 13V sing 32 n n 
C18 H4 13V sing 33 n n 
C18 H5 13V sing 34 n n 
C19 H6 13V sing 35 n n 
C19 H7 13V sing 36 n n 
C20 H8 13V sing 37 n n 
C20 H9 13V sing 38 n n 
C20 H10 13V sing 39 n n 
C10 H11 13V sing 40 n n 
N1 H12 13V sing 41 n n 
C8 H13 13V sing 42 n n 
C7 H14 13V sing 43 n n 
C13 H15 13V sing 44 n n 
C3 H16 13V sing 45 n n 
C3 H17 13V sing 46 n n 
C3 H18 13V sing 47 n n 
C2 H19 13V sing 48 n n 
C2 H20 13V sing 49 n n 
C2 H21 13V sing 50 n n 
O1 H22 13V sing 51 n n 
#
_atom_sites.entry_id                     4IDV 
_atom_sites.fract_transf_matrix[1][1]    0.022037 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006849 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003926 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 13V A 1 701 1 13V 13V . 
F 2 13V B 1 701 1 13V 13V . 
G 2 13V C 1 701 1 13V 13V . 
H 2 13V D 1 701 1 13V 13V . 
I 3 HOH A 1 801 10 HOH HOH . 
I 3 HOH A 2 802 19 HOH HOH . 
I 3 HOH A 3 803 21 HOH HOH . 
I 3 HOH A 4 804 22 HOH HOH . 
I 3 HOH A 5 805 33 HOH HOH . 
I 3 HOH A 6 806 34 HOH HOH . 
I 3 HOH A 7 807 36 HOH HOH . 
I 3 HOH A 8 808 37 HOH HOH . 
I 3 HOH A 9 809 40 HOH HOH . 
J 3 HOH B 1 801 1 HOH HOH . 
J 3 HOH B 2 802 4 HOH HOH . 
J 3 HOH B 3 803 6 HOH HOH . 
J 3 HOH B 4 804 13 HOH HOH . 
J 3 HOH B 5 805 20 HOH HOH . 
J 3 HOH B 6 806 25 HOH HOH . 
J 3 HOH B 7 807 29 HOH HOH . 
J 3 HOH B 8 808 31 HOH HOH . 
J 3 HOH B 9 809 32 HOH HOH . 
J 3 HOH B 10 810 38 HOH HOH . 
J 3 HOH B 11 811 39 HOH HOH . 
J 3 HOH B 12 812 42 HOH HOH . 
K 3 HOH C 1 801 14 HOH HOH . 
K 3 HOH C 2 802 15 HOH HOH . 
K 3 HOH C 3 803 18 HOH HOH . 
K 3 HOH C 4 804 23 HOH HOH . 
K 3 HOH C 5 805 27 HOH HOH . 
K 3 HOH C 6 806 41 HOH HOH . 
K 3 HOH C 7 807 43 HOH HOH . 
K 3 HOH C 8 808 44 HOH HOH . 
L 3 HOH D 1 801 2 HOH HOH . 
L 3 HOH D 2 802 3 HOH HOH . 
L 3 HOH D 3 803 5 HOH HOH . 
L 3 HOH D 4 804 7 HOH HOH . 
L 3 HOH D 5 805 8 HOH HOH . 
L 3 HOH D 6 806 9 HOH HOH . 
L 3 HOH D 7 807 11 HOH HOH . 
L 3 HOH D 8 808 12 HOH HOH . 
L 3 HOH D 9 809 16 HOH HOH . 
L 3 HOH D 10 810 17 HOH HOH . 
L 3 HOH D 11 811 24 HOH HOH . 
L 3 HOH D 12 812 26 HOH HOH . 
L 3 HOH D 13 813 28 HOH HOH . 
L 3 HOH D 14 814 30 HOH HOH . 
L 3 HOH D 15 815 35 HOH HOH . 
L 3 HOH D 16 816 45 HOH HOH . 
L 3 HOH D 17 817 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N3 13V . . . E 2 19.589 10.927 88.612 1 32.67 ? N3 13V 701 A 1 
HETATM 2 C C15 13V . . . E 2 19.744 12.166 88.128 1 32.9 ? C15 13V 701 A 1 
HETATM 3 N N2 13V . . . E 2 18.635 12.84 87.891 1 34.31 ? N2 13V 701 A 1 
HETATM 4 N N4 13V . . . E 2 20.971 12.579 87.958 1 34.13 ? N4 13V 701 A 1 
HETATM 5 C C16 13V . . . E 2 21.144 13.825 87.471 1 36.73 ? C16 13V 701 A 1 
HETATM 6 C C17 13V . . . E 2 20.064 14.65 87.137 1 38.41 ? C17 13V 701 A 1 
HETATM 7 O O2 13V . . . E 2 20.193 15.966 86.653 1 44.34 ? O2 13V 701 A 1 
HETATM 8 C C18 13V . . . E 2 21.193 16.567 85.867 1 49.95 ? C18 13V 701 A 1 
HETATM 9 C C19 13V . . . E 2 20.746 17.999 85.481 1 53.84 ? C19 13V 701 A 1 
HETATM 10 O O3 13V . . . E 2 19.845 18.128 84.377 1 53.19 ? O3 13V 701 A 1 
HETATM 11 C C20 13V . . . E 2 18.889 19.167 84.333 1 50.44 ? C20 13V 701 A 1 
HETATM 12 C C14 13V . . . E 2 18.751 14.1 87.396 1 37.14 ? C14 13V 701 A 1 
HETATM 13 C C11 13V . . . E 2 17.483 14.877 87.048 1 35.88 ? C11 13V 701 A 1 
HETATM 14 C C10 13V . . . E 2 17.436 16.127 86.47 1 35.27 ? C10 13V 701 A 1 
HETATM 15 N N1 13V . . . E 2 16.165 16.469 86.26 1 33.67 ? N1 13V 701 A 1 
HETATM 16 C C12 13V . . . E 2 16.152 14.457 87.146 1 33.81 ? C12 13V 701 A 1 
HETATM 17 C C9 13V . . . E 2 15.326 15.489 86.65 1 32.86 ? C9 13V 701 A 1 
HETATM 18 C C8 13V . . . E 2 13.944 15.436 86.614 1 32.76 ? C8 13V 701 A 1 
HETATM 19 C C7 13V . . . E 2 13.329 14.305 87.088 1 33.48 ? C7 13V 701 A 1 
HETATM 20 C C13 13V . . . E 2 15.488 13.335 87.615 1 32.81 ? C13 13V 701 A 1 
HETATM 21 C C6 13V . . . E 2 14.094 13.279 87.598 1 32.99 ? C6 13V 701 A 1 
HETATM 22 C C5 13V . . . E 2 13.504 12.115 88.077 1 31.87 ? C5 13V 701 A 1 
HETATM 23 C C4 13V . . . E 2 12.978 11.09 88.467 1 30.72 ? C4 13V 701 A 1 
HETATM 24 C C1 13V . . . E 2 12.345 9.814 88.91 1 30.07 ? C1 13V 701 A 1 
HETATM 25 C C3 13V . . . E 2 12.253 9.864 90.389 1 31.42 ? C3 13V 701 A 1 
HETATM 26 C C2 13V . . . E 2 13.187 8.667 88.414 1 29.3 ? C2 13V 701 A 1 
HETATM 27 O O1 13V . . . E 2 11.075 9.701 88.386 1 29.72 ? O1 13V 701 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#