data_4IE0 # _model_server_result.job_id U-ziWTqQ3zQ9Q1ia4T39ew _model_server_result.datetime_utc '2024-11-15 07:39:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ie0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 4IE0 # _exptl.entry_id 4IE0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 167.119 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYRIDINE-2,4-DICARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IE0 _cell.length_a 142.168 _cell.length_b 142.168 _cell.length_c 83.705 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IE0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 221 A HIS 231 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc2 A OD1 ASP 223 A ASP 233 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc3 A NE2 HIS 297 A HIS 307 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc4 B ZN ZN . A ZN 601 1_555 D N1 PD2 . A PD2 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? metalc ? metalc5 B ZN ZN . A ZN 601 1_555 D O21 PD2 . A PD2 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? # _chem_comp.formula 'C7 H5 N O4' _chem_comp.formula_weight 167.119 _chem_comp.id PD2 _chem_comp.mon_nstd_flag . _chem_comp.name 'PYRIDINE-2,4-DICARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O42 C41 PD2 doub 250 n n C41 O41 PD2 sing 251 n n C41 C4 PD2 sing 252 n n O41 H41 PD2 sing 253 n n C4 C5 PD2 doub 254 n y C4 C3 PD2 sing 255 n y C5 C6 PD2 sing 256 n y C5 H5 PD2 sing 257 n n C6 N1 PD2 doub 258 n y C6 H6 PD2 sing 259 n n C3 C2 PD2 doub 260 n y C3 H3 PD2 sing 261 n n C2 N1 PD2 sing 262 n y C2 C21 PD2 sing 263 n n C21 O21 PD2 doub 264 n n C21 O22 PD2 sing 265 n n O22 H22 PD2 sing 266 n n # _atom_sites.entry_id 4IE0 _atom_sites.fract_transf_matrix[1][1] 0.007034 _atom_sites.fract_transf_matrix[1][2] 0.004061 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008122 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011947 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 601 1 ZN ZN . C 3 GOL A 1 602 1 GOL GOL . D 4 PD2 A 1 603 1 PD2 PD2 . E 5 HOH A 1 701 2 HOH HOH . E 5 HOH A 2 702 3 HOH HOH . E 5 HOH A 3 703 5 HOH HOH . E 5 HOH A 4 704 6 HOH HOH . E 5 HOH A 5 705 7 HOH HOH . E 5 HOH A 6 706 22 HOH HOH . E 5 HOH A 7 707 25 HOH HOH . E 5 HOH A 8 708 27 HOH HOH . E 5 HOH A 9 709 30 HOH HOH . E 5 HOH A 10 710 45 HOH HOH . E 5 HOH A 11 711 48 HOH HOH . E 5 HOH A 12 712 60 HOH HOH . E 5 HOH A 13 713 65 HOH HOH . E 5 HOH A 14 714 68 HOH HOH . E 5 HOH A 15 715 69 HOH HOH . E 5 HOH A 16 716 72 HOH HOH . E 5 HOH A 17 717 73 HOH HOH . E 5 HOH A 18 718 75 HOH HOH . E 5 HOH A 19 719 77 HOH HOH . E 5 HOH A 20 720 78 HOH HOH . E 5 HOH A 21 721 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O42 PD2 . . . D 4 34.817 -8.591 -21.808 1 73.34 ? O42 PD2 603 A 1 HETATM 2 C C41 PD2 . . . D 4 34.217 -7.606 -21.305 1 71.53 ? C41 PD2 603 A 1 HETATM 3 O O41 PD2 . . . D 4 34.622 -7.157 -20.192 1 68.84 ? O41 PD2 603 A 1 HETATM 4 C C4 PD2 . . . D 4 33.04 -6.991 -22.003 1 68.72 ? C4 PD2 603 A 1 HETATM 5 C C5 PD2 . . . D 4 32.553 -5.803 -21.493 1 65.92 ? C5 PD2 603 A 1 HETATM 6 C C6 PD2 . . . D 4 31.475 -5.172 -22.09 1 65.27 ? C6 PD2 603 A 1 HETATM 7 C C3 PD2 . . . D 4 32.421 -7.554 -23.11 1 68.98 ? C3 PD2 603 A 1 HETATM 8 C C2 PD2 . . . D 4 31.333 -6.861 -23.656 1 72.85 ? C2 PD2 603 A 1 HETATM 9 N N1 PD2 . . . D 4 30.882 -5.701 -23.152 1 67.8 ? N1 PD2 603 A 1 HETATM 10 C C21 PD2 . . . D 4 30.598 -7.416 -24.82 1 79.91 ? C21 PD2 603 A 1 HETATM 11 O O21 PD2 . . . D 4 29.554 -6.839 -25.247 1 80.98 ? O21 PD2 603 A 1 HETATM 12 O O22 PD2 . . . D 4 31.009 -8.486 -25.336 1 81.84 ? O22 PD2 603 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #