data_4IE1 # _model_server_result.job_id DmpxlDydyVLziR_Xp3tAvA _model_server_result.datetime_utc '2024-12-13 01:03:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ie1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":502}' # _entry.id 4IE1 # _exptl.entry_id 4IE1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IE1 _cell.length_a 90.074 _cell.length_b 90.074 _cell.length_c 69.272 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IE1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1,2,3 B,F,G,H,J 2 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 90.074 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 45.037 78.006372 0 4 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 5 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 97 A HIS 101 1_555 E MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc2 A OD1 ASP 120 A ASP 124 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc3 A OD2 ASP 120 A ASP 124 1_555 E MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc4 A ND1 HIS 122 A HIS 126 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc5 A OD1 ASP 124 A ASP 128 1_555 E MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc6 A OD2 ASP 228 A ASP 232 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc7 A OD2 ASP 228 A ASP 232 1_555 E MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc8 A OD2 ASP 230 A ASP 234 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc9 A OD1 ASP 230 A ASP 234 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc10 C O13 1EC . A 1EC 401 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc11 C O11 1EC . A 1EC 401 1_555 E MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc12 C O13 1EC . A 1EC 401 1_555 E MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc13 B ND1 HIS 97 B HIS 101 1_555 H MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc14 B OD2 ASP 120 B ASP 124 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc15 B OD1 ASP 120 B ASP 124 1_555 H MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc16 B ND1 HIS 122 B HIS 126 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc17 B OD1 ASP 124 B ASP 128 1_555 H MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc18 B OD2 ASP 228 B ASP 232 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc19 B OD2 ASP 228 B ASP 232 1_555 H MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc20 B OD2 ASP 230 B ASP 234 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc21 B OD1 ASP 230 B ASP 234 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc22 F O13 1EC . B 1EC 501 1_555 G MN MN . B MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc23 F O11 1EC . B 1EC 501 1_555 H MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc24 F O13 1EC . B 1EC 501 1_555 H MN MN . B MN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4IE1 _atom_sites.fract_transf_matrix[1][1] 0.011102 _atom_sites.fract_transf_matrix[1][2] 0.00641 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012819 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014436 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1EC A 1 401 500 1EC X9A . D 3 MN A 1 402 323 MN MN . E 3 MN A 1 403 324 MN MN . F 2 1EC B 1 501 501 1EC X9A . G 3 MN B 1 502 325 MN MN . H 3 MN B 1 503 326 MN MN . I 4 HOH A 1 501 2 HOH HOH . I 4 HOH A 2 502 5 HOH HOH . I 4 HOH A 3 503 6 HOH HOH . I 4 HOH A 4 504 7 HOH HOH . I 4 HOH A 5 505 8 HOH HOH . I 4 HOH A 6 506 9 HOH HOH . I 4 HOH A 7 507 10 HOH HOH . I 4 HOH A 8 508 11 HOH HOH . I 4 HOH A 9 509 16 HOH HOH . I 4 HOH A 10 510 22 HOH HOH . I 4 HOH A 11 511 23 HOH HOH . I 4 HOH A 12 512 24 HOH HOH . I 4 HOH A 13 513 26 HOH HOH . I 4 HOH A 14 514 27 HOH HOH . I 4 HOH A 15 515 29 HOH HOH . I 4 HOH A 16 516 32 HOH HOH . I 4 HOH A 17 517 33 HOH HOH . I 4 HOH A 18 518 34 HOH HOH . I 4 HOH A 19 519 35 HOH HOH . I 4 HOH A 20 520 40 HOH HOH . I 4 HOH A 21 521 41 HOH HOH . I 4 HOH A 22 522 42 HOH HOH . I 4 HOH A 23 523 43 HOH HOH . I 4 HOH A 24 524 45 HOH HOH . I 4 HOH A 25 525 46 HOH HOH . I 4 HOH A 26 526 48 HOH HOH . I 4 HOH A 27 527 49 HOH HOH . I 4 HOH A 28 528 50 HOH HOH . I 4 HOH A 29 529 51 HOH HOH . I 4 HOH A 30 530 52 HOH HOH . I 4 HOH A 31 531 54 HOH HOH . I 4 HOH A 32 532 55 HOH HOH . I 4 HOH A 33 533 58 HOH HOH . I 4 HOH A 34 534 59 HOH HOH . I 4 HOH A 35 535 60 HOH HOH . I 4 HOH A 36 536 64 HOH HOH . I 4 HOH A 37 537 66 HOH HOH . I 4 HOH A 38 538 67 HOH HOH . I 4 HOH A 39 539 71 HOH HOH . I 4 HOH A 40 540 73 HOH HOH . I 4 HOH A 41 541 78 HOH HOH . I 4 HOH A 42 542 82 HOH HOH . I 4 HOH A 43 543 86 HOH HOH . I 4 HOH A 44 544 87 HOH HOH . I 4 HOH A 45 545 89 HOH HOH . I 4 HOH A 46 546 93 HOH HOH . I 4 HOH A 47 547 94 HOH HOH . I 4 HOH A 48 548 98 HOH HOH . I 4 HOH A 49 549 103 HOH HOH . I 4 HOH A 50 550 107 HOH HOH . I 4 HOH A 51 551 108 HOH HOH . I 4 HOH A 52 552 111 HOH HOH . I 4 HOH A 53 553 112 HOH HOH . I 4 HOH A 54 554 113 HOH HOH . I 4 HOH A 55 555 116 HOH HOH . I 4 HOH A 56 556 123 HOH HOH . I 4 HOH A 57 557 127 HOH HOH . I 4 HOH A 58 558 130 HOH HOH . I 4 HOH A 59 559 135 HOH HOH . I 4 HOH A 60 560 138 HOH HOH . I 4 HOH A 61 561 140 HOH HOH . I 4 HOH A 62 562 141 HOH HOH . I 4 HOH A 63 563 143 HOH HOH . I 4 HOH A 64 564 144 HOH HOH . I 4 HOH A 65 565 148 HOH HOH . I 4 HOH A 66 566 150 HOH HOH . I 4 HOH A 67 567 152 HOH HOH . I 4 HOH A 68 568 153 HOH HOH . I 4 HOH A 69 569 155 HOH HOH . I 4 HOH A 70 570 156 HOH HOH . I 4 HOH A 71 571 157 HOH HOH . I 4 HOH A 72 572 159 HOH HOH . I 4 HOH A 73 573 160 HOH HOH . I 4 HOH A 74 574 163 HOH HOH . I 4 HOH A 75 575 166 HOH HOH . I 4 HOH A 76 576 169 HOH HOH . I 4 HOH A 77 577 173 HOH HOH . I 4 HOH A 78 578 177 HOH HOH . I 4 HOH A 79 579 179 HOH HOH . I 4 HOH A 80 580 181 HOH HOH . I 4 HOH A 81 581 183 HOH HOH . I 4 HOH A 82 582 184 HOH HOH . I 4 HOH A 83 583 185 HOH HOH . I 4 HOH A 84 584 186 HOH HOH . I 4 HOH A 85 585 187 HOH HOH . I 4 HOH A 86 586 188 HOH HOH . I 4 HOH A 87 587 190 HOH HOH . I 4 HOH A 88 588 192 HOH HOH . I 4 HOH A 89 589 193 HOH HOH . I 4 HOH A 90 590 195 HOH HOH . I 4 HOH A 91 591 199 HOH HOH . I 4 HOH A 92 592 201 HOH HOH . I 4 HOH A 93 593 202 HOH HOH . I 4 HOH A 94 594 203 HOH HOH . I 4 HOH A 95 595 204 HOH HOH . I 4 HOH A 96 596 211 HOH HOH . I 4 HOH A 97 597 214 HOH HOH . I 4 HOH A 98 598 216 HOH HOH . I 4 HOH A 99 599 218 HOH HOH . I 4 HOH A 100 600 219 HOH HOH . I 4 HOH A 101 601 222 HOH HOH . I 4 HOH A 102 602 229 HOH HOH . I 4 HOH A 103 603 230 HOH HOH . I 4 HOH A 104 604 232 HOH HOH . I 4 HOH A 105 605 233 HOH HOH . I 4 HOH A 106 606 236 HOH HOH . I 4 HOH A 107 607 238 HOH HOH . J 4 HOH B 1 601 3 HOH HOH . J 4 HOH B 2 602 12 HOH HOH . J 4 HOH B 3 603 13 HOH HOH . J 4 HOH B 4 604 14 HOH HOH . J 4 HOH B 5 605 15 HOH HOH . J 4 HOH B 6 606 18 HOH HOH . J 4 HOH B 7 607 20 HOH HOH . J 4 HOH B 8 608 21 HOH HOH . J 4 HOH B 9 609 25 HOH HOH . J 4 HOH B 10 610 31 HOH HOH . J 4 HOH B 11 611 36 HOH HOH . J 4 HOH B 12 612 38 HOH HOH . J 4 HOH B 13 613 44 HOH HOH . J 4 HOH B 14 614 47 HOH HOH . J 4 HOH B 15 615 53 HOH HOH . J 4 HOH B 16 616 57 HOH HOH . J 4 HOH B 17 617 61 HOH HOH . J 4 HOH B 18 618 62 HOH HOH . J 4 HOH B 19 619 63 HOH HOH . J 4 HOH B 20 620 65 HOH HOH . J 4 HOH B 21 621 74 HOH HOH . J 4 HOH B 22 622 75 HOH HOH . J 4 HOH B 23 623 77 HOH HOH . J 4 HOH B 24 624 80 HOH HOH . J 4 HOH B 25 625 81 HOH HOH . J 4 HOH B 26 626 83 HOH HOH . J 4 HOH B 27 627 84 HOH HOH . J 4 HOH B 28 628 85 HOH HOH . J 4 HOH B 29 629 88 HOH HOH . J 4 HOH B 30 630 91 HOH HOH . J 4 HOH B 31 631 92 HOH HOH . J 4 HOH B 32 632 96 HOH HOH . J 4 HOH B 33 633 105 HOH HOH . J 4 HOH B 34 634 106 HOH HOH . J 4 HOH B 35 635 109 HOH HOH . J 4 HOH B 36 636 110 HOH HOH . J 4 HOH B 37 637 117 HOH HOH . J 4 HOH B 38 638 118 HOH HOH . J 4 HOH B 39 639 119 HOH HOH . J 4 HOH B 40 640 121 HOH HOH . J 4 HOH B 41 641 122 HOH HOH . J 4 HOH B 42 642 124 HOH HOH . J 4 HOH B 43 643 125 HOH HOH . J 4 HOH B 44 644 131 HOH HOH . J 4 HOH B 45 645 133 HOH HOH . J 4 HOH B 46 646 134 HOH HOH . J 4 HOH B 47 647 136 HOH HOH . J 4 HOH B 48 648 137 HOH HOH . J 4 HOH B 49 649 145 HOH HOH . J 4 HOH B 50 650 146 HOH HOH . J 4 HOH B 51 651 147 HOH HOH . J 4 HOH B 52 652 151 HOH HOH . J 4 HOH B 53 653 154 HOH HOH . J 4 HOH B 54 654 158 HOH HOH . J 4 HOH B 55 655 161 HOH HOH . J 4 HOH B 56 656 162 HOH HOH . J 4 HOH B 57 657 164 HOH HOH . J 4 HOH B 58 658 165 HOH HOH . J 4 HOH B 59 659 168 HOH HOH . J 4 HOH B 60 660 171 HOH HOH . J 4 HOH B 61 661 172 HOH HOH . J 4 HOH B 62 662 175 HOH HOH . J 4 HOH B 63 663 176 HOH HOH . J 4 HOH B 64 664 178 HOH HOH . J 4 HOH B 65 665 180 HOH HOH . J 4 HOH B 66 666 189 HOH HOH . J 4 HOH B 67 667 191 HOH HOH . J 4 HOH B 68 668 194 HOH HOH . J 4 HOH B 69 669 196 HOH HOH . J 4 HOH B 70 670 197 HOH HOH . J 4 HOH B 71 671 198 HOH HOH . J 4 HOH B 72 672 200 HOH HOH . J 4 HOH B 73 673 205 HOH HOH . J 4 HOH B 74 674 207 HOH HOH . J 4 HOH B 75 675 208 HOH HOH . J 4 HOH B 76 676 210 HOH HOH . J 4 HOH B 77 677 213 HOH HOH . J 4 HOH B 78 678 223 HOH HOH . J 4 HOH B 79 679 224 HOH HOH . J 4 HOH B 80 680 225 HOH HOH . J 4 HOH B 81 681 231 HOH HOH . J 4 HOH B 82 682 234 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 15.203 _atom_site.Cartn_y 13.648 _atom_site.Cartn_z -21.406 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.04 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 502 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 561 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #