data_4IFB # _model_server_result.job_id m9GPFt43s2il4lsedt6jpQ _model_server_result.datetime_utc '2024-11-04 23:00:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ifb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":305}' # _entry.id 4IFB # _exptl.entry_id 4IFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IFB _cell.length_a 73.374 _cell.length_b 94.683 _cell.length_c 129.468 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L 1 1 A,C,D,E,K 2 1 B,F,G,H,I,J,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N ? 2 H N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ARG 174 A ARG 174 1_555 E K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? metalc ? metalc2 A O GLU 176 A GLU 176 1_555 E K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc3 A O PHE 179 A PHE 179 1_555 E K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc4 E K K . A K 303 1_555 K O HOH . A HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.235 ? metalc ? metalc5 E K K . A K 303 1_555 K O HOH . A HOH 496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc6 E K K . A K 303 1_555 K O HOH . A HOH 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc7 B O ARG 174 B ARG 174 1_555 I K K . B K 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc8 B O GLU 176 B GLU 176 1_555 I K K . B K 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc9 B O PHE 179 B PHE 179 1_555 I K K . B K 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc10 I K K . B K 304 1_555 L O HOH . B HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc11 I K K . B K 304 1_555 L O HOH . B HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.435 ? metalc ? metalc12 I K K . B K 304 1_555 L O HOH . B HOH 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 4IFB _atom_sites.fract_transf_matrix[1][1] 0.013629 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 301 1 PO4 PO4 . D 3 PPS A 1 302 501 PPS PPS . E 4 K A 1 303 1 K K . F 2 PO4 B 1 301 1 PO4 PO4 . G 3 PPS B 1 302 501 PPS PPS . H 2 PO4 B 1 303 1 PO4 PO4 . I 4 K B 1 304 2 K K . J 2 PO4 B 1 305 1 PO4 PO4 . K 5 HOH A 1 401 1 HOH HOH . K 5 HOH A 2 402 2 HOH HOH . K 5 HOH A 3 403 4 HOH HOH . K 5 HOH A 4 404 5 HOH HOH . K 5 HOH A 5 405 6 HOH HOH . K 5 HOH A 6 406 9 HOH HOH . K 5 HOH A 7 407 10 HOH HOH . K 5 HOH A 8 408 11 HOH HOH . K 5 HOH A 9 409 12 HOH HOH . K 5 HOH A 10 410 13 HOH HOH . K 5 HOH A 11 411 14 HOH HOH . K 5 HOH A 12 412 16 HOH HOH . K 5 HOH A 13 413 17 HOH HOH . K 5 HOH A 14 414 18 HOH HOH . K 5 HOH A 15 415 22 HOH HOH . K 5 HOH A 16 416 23 HOH HOH . K 5 HOH A 17 417 25 HOH HOH . K 5 HOH A 18 418 28 HOH HOH . K 5 HOH A 19 419 31 HOH HOH . K 5 HOH A 20 420 32 HOH HOH . K 5 HOH A 21 421 34 HOH HOH . K 5 HOH A 22 422 39 HOH HOH . K 5 HOH A 23 423 40 HOH HOH . K 5 HOH A 24 424 42 HOH HOH . K 5 HOH A 25 425 43 HOH HOH . K 5 HOH A 26 426 44 HOH HOH . K 5 HOH A 27 427 45 HOH HOH . K 5 HOH A 28 428 50 HOH HOH . K 5 HOH A 29 429 52 HOH HOH . K 5 HOH A 30 430 53 HOH HOH . K 5 HOH A 31 431 54 HOH HOH . K 5 HOH A 32 432 60 HOH HOH . K 5 HOH A 33 433 62 HOH HOH . K 5 HOH A 34 434 66 HOH HOH . K 5 HOH A 35 435 67 HOH HOH . K 5 HOH A 36 436 70 HOH HOH . K 5 HOH A 37 437 72 HOH HOH . K 5 HOH A 38 438 73 HOH HOH . K 5 HOH A 39 439 74 HOH HOH . K 5 HOH A 40 440 76 HOH HOH . K 5 HOH A 41 441 77 HOH HOH . K 5 HOH A 42 442 79 HOH HOH . K 5 HOH A 43 443 80 HOH HOH . K 5 HOH A 44 444 81 HOH HOH . K 5 HOH A 45 445 83 HOH HOH . K 5 HOH A 46 446 84 HOH HOH . K 5 HOH A 47 447 85 HOH HOH . K 5 HOH A 48 448 87 HOH HOH . K 5 HOH A 49 449 90 HOH HOH . K 5 HOH A 50 450 91 HOH HOH . K 5 HOH A 51 451 92 HOH HOH . K 5 HOH A 52 452 93 HOH HOH . K 5 HOH A 53 453 94 HOH HOH . K 5 HOH A 54 454 98 HOH HOH . K 5 HOH A 55 455 100 HOH HOH . K 5 HOH A 56 456 102 HOH HOH . K 5 HOH A 57 457 104 HOH HOH . K 5 HOH A 58 458 106 HOH HOH . K 5 HOH A 59 459 108 HOH HOH . K 5 HOH A 60 460 110 HOH HOH . K 5 HOH A 61 461 111 HOH HOH . K 5 HOH A 62 462 113 HOH HOH . K 5 HOH A 63 463 116 HOH HOH . K 5 HOH A 64 464 118 HOH HOH . K 5 HOH A 65 465 120 HOH HOH . K 5 HOH A 66 466 121 HOH HOH . K 5 HOH A 67 467 128 HOH HOH . K 5 HOH A 68 468 129 HOH HOH . K 5 HOH A 69 469 130 HOH HOH . K 5 HOH A 70 470 132 HOH HOH . K 5 HOH A 71 471 134 HOH HOH . K 5 HOH A 72 472 135 HOH HOH . K 5 HOH A 73 473 136 HOH HOH . K 5 HOH A 74 474 139 HOH HOH . K 5 HOH A 75 475 143 HOH HOH . K 5 HOH A 76 476 144 HOH HOH . K 5 HOH A 77 477 145 HOH HOH . K 5 HOH A 78 478 147 HOH HOH . K 5 HOH A 79 479 148 HOH HOH . K 5 HOH A 80 480 149 HOH HOH . K 5 HOH A 81 481 150 HOH HOH . K 5 HOH A 82 482 151 HOH HOH . K 5 HOH A 83 483 152 HOH HOH . K 5 HOH A 84 484 154 HOH HOH . K 5 HOH A 85 485 156 HOH HOH . K 5 HOH A 86 486 157 HOH HOH . K 5 HOH A 87 487 158 HOH HOH . K 5 HOH A 88 488 159 HOH HOH . K 5 HOH A 89 489 166 HOH HOH . K 5 HOH A 90 490 169 HOH HOH . K 5 HOH A 91 491 170 HOH HOH . K 5 HOH A 92 492 172 HOH HOH . K 5 HOH A 93 493 175 HOH HOH . K 5 HOH A 94 494 176 HOH HOH . K 5 HOH A 95 495 179 HOH HOH . K 5 HOH A 96 496 182 HOH HOH . K 5 HOH A 97 497 183 HOH HOH . K 5 HOH A 98 498 5 HOH HOH . K 5 HOH A 99 499 6 HOH HOH . K 5 HOH A 100 500 7 HOH HOH . K 5 HOH A 101 501 13 HOH HOH . K 5 HOH A 102 502 14 HOH HOH . K 5 HOH A 103 503 15 HOH HOH . K 5 HOH A 104 504 16 HOH HOH . K 5 HOH A 105 505 18 HOH HOH . K 5 HOH A 106 506 19 HOH HOH . K 5 HOH A 107 507 20 HOH HOH . K 5 HOH A 108 508 21 HOH HOH . K 5 HOH A 109 509 22 HOH HOH . K 5 HOH A 110 510 23 HOH HOH . K 5 HOH A 111 511 24 HOH HOH . K 5 HOH A 112 512 25 HOH HOH . K 5 HOH A 113 513 30 HOH HOH . L 5 HOH B 1 401 3 HOH HOH . L 5 HOH B 2 402 7 HOH HOH . L 5 HOH B 3 403 8 HOH HOH . L 5 HOH B 4 404 15 HOH HOH . L 5 HOH B 5 405 19 HOH HOH . L 5 HOH B 6 406 20 HOH HOH . L 5 HOH B 7 407 21 HOH HOH . L 5 HOH B 8 408 24 HOH HOH . L 5 HOH B 9 409 26 HOH HOH . L 5 HOH B 10 410 27 HOH HOH . L 5 HOH B 11 411 29 HOH HOH . L 5 HOH B 12 412 30 HOH HOH . L 5 HOH B 13 413 33 HOH HOH . L 5 HOH B 14 414 35 HOH HOH . L 5 HOH B 15 415 36 HOH HOH . L 5 HOH B 16 416 37 HOH HOH . L 5 HOH B 17 417 38 HOH HOH . L 5 HOH B 18 418 41 HOH HOH . L 5 HOH B 19 419 46 HOH HOH . L 5 HOH B 20 420 47 HOH HOH . L 5 HOH B 21 421 48 HOH HOH . L 5 HOH B 22 422 49 HOH HOH . L 5 HOH B 23 423 51 HOH HOH . L 5 HOH B 24 424 55 HOH HOH . L 5 HOH B 25 425 56 HOH HOH . L 5 HOH B 26 426 57 HOH HOH . L 5 HOH B 27 427 58 HOH HOH . L 5 HOH B 28 428 59 HOH HOH . L 5 HOH B 29 429 61 HOH HOH . L 5 HOH B 30 430 63 HOH HOH . L 5 HOH B 31 431 64 HOH HOH . L 5 HOH B 32 432 65 HOH HOH . L 5 HOH B 33 433 68 HOH HOH . L 5 HOH B 34 434 69 HOH HOH . L 5 HOH B 35 435 71 HOH HOH . L 5 HOH B 36 436 75 HOH HOH . L 5 HOH B 37 437 78 HOH HOH . L 5 HOH B 38 438 82 HOH HOH . L 5 HOH B 39 439 86 HOH HOH . L 5 HOH B 40 440 88 HOH HOH . L 5 HOH B 41 441 89 HOH HOH . L 5 HOH B 42 442 95 HOH HOH . L 5 HOH B 43 443 96 HOH HOH . L 5 HOH B 44 444 97 HOH HOH . L 5 HOH B 45 445 99 HOH HOH . L 5 HOH B 46 446 101 HOH HOH . L 5 HOH B 47 447 103 HOH HOH . L 5 HOH B 48 448 105 HOH HOH . L 5 HOH B 49 449 107 HOH HOH . L 5 HOH B 50 450 109 HOH HOH . L 5 HOH B 51 451 112 HOH HOH . L 5 HOH B 52 452 114 HOH HOH . L 5 HOH B 53 453 115 HOH HOH . L 5 HOH B 54 454 117 HOH HOH . L 5 HOH B 55 455 119 HOH HOH . L 5 HOH B 56 456 122 HOH HOH . L 5 HOH B 57 457 123 HOH HOH . L 5 HOH B 58 458 124 HOH HOH . L 5 HOH B 59 459 125 HOH HOH . L 5 HOH B 60 460 126 HOH HOH . L 5 HOH B 61 461 127 HOH HOH . L 5 HOH B 62 462 131 HOH HOH . L 5 HOH B 63 463 133 HOH HOH . L 5 HOH B 64 464 137 HOH HOH . L 5 HOH B 65 465 138 HOH HOH . L 5 HOH B 66 466 141 HOH HOH . L 5 HOH B 67 467 142 HOH HOH . L 5 HOH B 68 468 146 HOH HOH . L 5 HOH B 69 469 153 HOH HOH . L 5 HOH B 70 470 155 HOH HOH . L 5 HOH B 71 471 160 HOH HOH . L 5 HOH B 72 472 161 HOH HOH . L 5 HOH B 73 473 162 HOH HOH . L 5 HOH B 74 474 163 HOH HOH . L 5 HOH B 75 475 165 HOH HOH . L 5 HOH B 76 476 167 HOH HOH . L 5 HOH B 77 477 168 HOH HOH . L 5 HOH B 78 478 173 HOH HOH . L 5 HOH B 79 479 174 HOH HOH . L 5 HOH B 80 480 177 HOH HOH . L 5 HOH B 81 481 178 HOH HOH . L 5 HOH B 82 482 180 HOH HOH . L 5 HOH B 83 483 181 HOH HOH . L 5 HOH B 84 484 184 HOH HOH . L 5 HOH B 85 485 1 HOH HOH . L 5 HOH B 86 486 3 HOH HOH . L 5 HOH B 87 487 4 HOH HOH . L 5 HOH B 88 488 8 HOH HOH . L 5 HOH B 89 489 9 HOH HOH . L 5 HOH B 90 490 10 HOH HOH . L 5 HOH B 91 491 12 HOH HOH . L 5 HOH B 92 492 27 HOH HOH . L 5 HOH B 93 493 28 HOH HOH . L 5 HOH B 94 494 29 HOH HOH . L 5 HOH B 95 495 31 HOH HOH . L 5 HOH B 96 496 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . J 2 -17.184 -10.395 29.89 1 106.36 ? P PO4 305 B 1 HETATM 2 O O1 PO4 . . . J 2 -16.14 -9.407 29.41 1 93.92 ? O1 PO4 305 B 1 HETATM 3 O O2 PO4 . . . J 2 -18.417 -10.233 29.037 1 110.8 ? O2 PO4 305 B 1 HETATM 4 O O3 PO4 . . . J 2 -16.681 -11.823 29.741 1 72.83 ? O3 PO4 305 B 1 HETATM 5 O O4 PO4 . . . J 2 -17.543 -10.085 31.333 1 85.76 ? O4 PO4 305 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 178 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #