data_4IFG # _model_server_result.job_id j9q0Kvn5ghK_T1FG-np_pQ _model_server_result.datetime_utc '2024-11-14 09:32:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ifg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4IFG # _exptl.entry_id 4IFG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 440.497 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{(3R)-3-[4-amino-3-(4-phenoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl}prop-2-en-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.66 _cell.angle_gamma 90 _cell.entry_id 4IFG _cell.length_a 48.397 _cell.length_b 72.778 _cell.length_c 67.085 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IFG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H24 N6 O2' _chem_comp.formula_weight 440.497 _chem_comp.id 1E8 _chem_comp.mon_nstd_flag . _chem_comp.name 1-{(3R)-3-[4-amino-3-(4-phenoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl}prop-2-en-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Imbruvica;PCI-32765 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 1E8 doub 1 n y N1 C6 1E8 sing 2 n y N3 C2 1E8 sing 3 n y C2 H2 1E8 sing 4 n n N3 C4 1E8 doub 5 n y NBF C4 1E8 sing 6 n y C4 C5 1E8 sing 7 n y C5 C6 1E8 doub 8 n y C5 CBB 1E8 sing 9 n y C6 NAB 1E8 sing 10 n n CAA CAD 1E8 doub 11 n n CAA HAA 1E8 sing 12 n n CAA HAAA 1E8 sing 13 n n NAB HNAB 1E8 sing 14 n n NAB HNAA 1E8 sing 15 n n OAC CAW 1E8 doub 16 n n CAD CAW 1E8 sing 17 n n CAD HAD 1E8 sing 18 n n CAF CAE 1E8 doub 19 n y CAE CAG 1E8 sing 20 n y CAE HAE 1E8 sing 21 n n CAF CAI 1E8 sing 22 n y CAF HAF 1E8 sing 23 n n CAG CAJ 1E8 doub 24 n y CAG HAG 1E8 sing 25 n n CAI CAY 1E8 doub 26 n y CAI HAI 1E8 sing 27 n n CAY CAJ 1E8 sing 28 n y CAJ HAJ 1E8 sing 29 n n CAM CAK 1E8 doub 30 n y CAK CAZ 1E8 sing 31 n y CAK HAK 1E8 sing 32 n n CAZ CAL 1E8 doub 33 n y CAN CAL 1E8 sing 34 n y CAL HAL 1E8 sing 35 n n CAM CBA 1E8 sing 36 n y CAM HAM 1E8 sing 37 n n CBA CAN 1E8 doub 38 n y CAN HAN 1E8 sing 39 n n CAQ CAO 1E8 sing 40 n n CAO CAP 1E8 sing 41 n n CAO HAO 1E8 sing 42 n n CAO HAOA 1E8 sing 43 n n CBE CAP 1E8 sing 44 n n CAP HAP 1E8 sing 45 n n CAP HAPA 1E8 sing 46 n n NBG CAQ 1E8 sing 47 n n CAQ HAQ 1E8 sing 48 n n CAQ HAQA 1E8 sing 49 n n NBG CAR 1E8 sing 50 n n CAR CBE 1E8 sing 51 n n CAR HAR 1E8 sing 52 n n CAR HARA 1E8 sing 53 n n NBF NAU 1E8 sing 54 n y NAU CBB 1E8 doub 55 n y CAZ OAV 1E8 sing 56 n n CAY OAV 1E8 sing 57 n n CAW NBG 1E8 sing 58 n n CBB CBA 1E8 sing 59 n n CBE NBF 1E8 sing 60 n n CBE HBE 1E8 sing 61 n n # _atom_sites.entry_id 4IFG _atom_sites.fract_transf_matrix[1][1] 0.020662 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004263 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01374 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01522 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1E8 A 1 601 1 1E8 1E8 . C 3 UNX A 1 602 1 UNX UNX . D 4 HOH A 1 701 1 HOH HOH . D 4 HOH A 2 702 3 HOH HOH . D 4 HOH A 3 703 4 HOH HOH . D 4 HOH A 4 704 5 HOH HOH . D 4 HOH A 5 705 8 HOH HOH . D 4 HOH A 6 706 10 HOH HOH . D 4 HOH A 7 707 13 HOH HOH . D 4 HOH A 8 708 19 HOH HOH . D 4 HOH A 9 709 21 HOH HOH . D 4 HOH A 10 710 23 HOH HOH . D 4 HOH A 11 711 27 HOH HOH . D 4 HOH A 12 712 28 HOH HOH . D 4 HOH A 13 713 29 HOH HOH . D 4 HOH A 14 714 32 HOH HOH . D 4 HOH A 15 715 47 HOH HOH . D 4 HOH A 16 716 48 HOH HOH . D 4 HOH A 17 717 49 HOH HOH . D 4 HOH A 18 718 50 HOH HOH . D 4 HOH A 19 719 51 HOH HOH . D 4 HOH A 20 720 52 HOH HOH . D 4 HOH A 21 721 53 HOH HOH . D 4 HOH A 22 722 54 HOH HOH . D 4 HOH A 23 723 56 HOH HOH . D 4 HOH A 24 724 57 HOH HOH . D 4 HOH A 25 725 58 HOH HOH . D 4 HOH A 26 726 60 HOH HOH . D 4 HOH A 27 727 61 HOH HOH . D 4 HOH A 28 728 62 HOH HOH . D 4 HOH A 29 729 63 HOH HOH . D 4 HOH A 30 730 64 HOH HOH . D 4 HOH A 31 731 65 HOH HOH . D 4 HOH A 32 732 66 HOH HOH . D 4 HOH A 33 733 67 HOH HOH . D 4 HOH A 34 734 68 HOH HOH . D 4 HOH A 35 735 71 HOH HOH . D 4 HOH A 36 736 73 HOH HOH . D 4 HOH A 37 737 74 HOH HOH . D 4 HOH A 38 738 75 HOH HOH . D 4 HOH A 39 739 79 HOH HOH . D 4 HOH A 40 740 80 HOH HOH . D 4 HOH A 41 741 81 HOH HOH . D 4 HOH A 42 742 82 HOH HOH . D 4 HOH A 43 743 83 HOH HOH . D 4 HOH A 44 744 84 HOH HOH . D 4 HOH A 45 745 85 HOH HOH . D 4 HOH A 46 746 86 HOH HOH . D 4 HOH A 47 747 87 HOH HOH . D 4 HOH A 48 748 88 HOH HOH . D 4 HOH A 49 749 89 HOH HOH . D 4 HOH A 50 750 90 HOH HOH . D 4 HOH A 51 751 91 HOH HOH . D 4 HOH A 52 752 92 HOH HOH . D 4 HOH A 53 753 93 HOH HOH . D 4 HOH A 54 754 94 HOH HOH . D 4 HOH A 55 755 95 HOH HOH . D 4 HOH A 56 756 96 HOH HOH . D 4 HOH A 57 757 97 HOH HOH . D 4 HOH A 58 758 98 HOH HOH . D 4 HOH A 59 759 99 HOH HOH . D 4 HOH A 60 760 100 HOH HOH . D 4 HOH A 61 761 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 1E8 . . . B 2 -11.897 -20.064 96.294 1 39.14 ? N1 1E8 601 A 1 HETATM 2 C C2 1E8 . . . B 2 -10.699 -19.491 95.818 1 40.96 ? C2 1E8 601 A 1 HETATM 3 N N3 1E8 . . . B 2 -10.657 -18.098 95.668 1 41.34 ? N3 1E8 601 A 1 HETATM 4 C C4 1E8 . . . B 2 -11.759 -17.374 95.976 1 41.99 ? C4 1E8 601 A 1 HETATM 5 C C5 1E8 . . . B 2 -12.9 -17.94 96.428 1 39.3 ? C5 1E8 601 A 1 HETATM 6 C C6 1E8 . . . B 2 -12.952 -19.285 96.573 1 39.24 ? C6 1E8 601 A 1 HETATM 7 C CAA 1E8 . . . B 2 -6.523 -13.794 91.56 1 56.68 ? CAA 1E8 601 A 1 HETATM 8 N NAB 1E8 . . . B 2 -14.074 -19.85 97.014 1 39.54 ? NAB 1E8 601 A 1 HETATM 9 O OAC 1E8 . . . B 2 -8.618 -15.571 92.318 1 48.91 ? OAC 1E8 601 A 1 HETATM 10 C CAD 1E8 . . . B 2 -7.689 -13.348 92.452 1 53.87 ? CAD 1E8 601 A 1 HETATM 11 C CAE 1E8 . . . B 2 -22.463 -17.717 97.573 1 46.8 ? CAE 1E8 601 A 1 HETATM 12 C CAF 1E8 . . . B 2 -22.095 -16.373 97.467 1 46.31 ? CAF 1E8 601 A 1 HETATM 13 C CAG 1E8 . . . B 2 -21.58 -18.641 98.146 1 47.76 ? CAG 1E8 601 A 1 HETATM 14 C CAI 1E8 . . . B 2 -20.85 -15.954 97.933 1 43.17 ? CAI 1E8 601 A 1 HETATM 15 C CAJ 1E8 . . . B 2 -20.327 -18.221 98.609 1 45.22 ? CAJ 1E8 601 A 1 HETATM 16 C CAK 1E8 . . . B 2 -17.329 -16.075 97.005 1 32.42 ? CAK 1E8 601 A 1 HETATM 17 C CAL 1E8 . . . B 2 -16.486 -17.144 98.975 1 33.04 ? CAL 1E8 601 A 1 HETATM 18 C CAM 1E8 . . . B 2 -16.058 -16.184 96.406 1 34.61 ? CAM 1E8 601 A 1 HETATM 19 C CAN 1E8 . . . B 2 -15.227 -17.249 98.38 1 33.19 ? CAN 1E8 601 A 1 HETATM 20 C CAO 1E8 . . . B 2 -9.838 -12.758 95.607 1 42.42 ? CAO 1E8 601 A 1 HETATM 21 C CAP 1E8 . . . B 2 -10.948 -13.725 96.115 1 43.15 ? CAP 1E8 601 A 1 HETATM 22 C CAQ 1E8 . . . B 2 -9.867 -12.668 94.078 1 43.04 ? CAQ 1E8 601 A 1 HETATM 23 C CAR 1E8 . . . B 2 -10.834 -15.004 93.921 1 41.86 ? CAR 1E8 601 A 1 HETATM 24 N NAU 1E8 . . . B 2 -13.092 -15.785 96.278 1 39.09 ? NAU 1E8 601 A 1 HETATM 25 O OAV 1E8 . . . B 2 -18.75 -16.453 98.948 1 38.23 ? OAV 1E8 601 A 1 HETATM 26 C CAW 1E8 . . . B 2 -8.737 -14.431 92.77 1 49.7 ? CAW 1E8 601 A 1 HETATM 27 C CAY 1E8 . . . B 2 -19.958 -16.877 98.481 1 42.26 ? CAY 1E8 601 A 1 HETATM 28 C CAZ 1E8 . . . B 2 -17.551 -16.568 98.285 1 33.36 ? CAZ 1E8 601 A 1 HETATM 29 C CBA 1E8 . . . B 2 -15 -16.808 97.082 1 34.54 ? CBA 1E8 601 A 1 HETATM 30 C CBB 1E8 . . . B 2 -13.744 -16.897 96.595 1 38.89 ? CBB 1E8 601 A 1 HETATM 31 C CBE 1E8 . . . B 2 -10.865 -15.13 95.445 1 40.49 ? CBE 1E8 601 A 1 HETATM 32 N NBF 1E8 . . . B 2 -11.947 -16.057 95.909 1 42.76 ? NBF 1E8 601 A 1 HETATM 33 N NBG 1E8 . . . B 2 -9.78 -14.036 93.526 1 46.15 ? NBG 1E8 601 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 33 #