data_4IFH # _model_server_result.job_id GPR8pUEF7dfeDiwfWAYQwQ _model_server_result.datetime_utc '2025-03-12 07:02:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ifh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1102}' # _entry.id 4IFH # _exptl.entry_id 4IFH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.498 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-({1-[(2R)-4-(hydroxyamino)-1-(naphthalen-2-yl)-4-oxobutan-2-yl]-1H-1,2,3-triazol-4-yl}methyl)-4-methylbenzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IFH _cell.length_a 263.022 _cell.length_b 263.022 _cell.length_c 90.59 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IFH _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,C,F 2 1 B,D,E,G 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 108 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc2 A NE2 HIS 83 A HIS 112 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc3 A OE1 GLU 160 A GLU 189 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc4 A OE2 GLU 160 A GLU 189 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc5 C ZN ZN . A ZN 1101 1_555 F O HOH . A HOH 1220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc6 B NE2 HIS 79 B HIS 108 1_555 D ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc7 B NE2 HIS 83 B HIS 112 1_555 D ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc8 B OE1 GLU 160 B GLU 189 1_555 D ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc9 D ZN ZN . B ZN 1101 1_555 E OBG 1EF . B 1EF 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc10 D ZN ZN . B ZN 1101 1_555 E OBE 1EF . B 1EF 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? # _chem_comp.formula 'C25 H25 N5 O3' _chem_comp.formula_weight 443.498 _chem_comp.id 1EF _chem_comp.mon_nstd_flag . _chem_comp.name N-({1-[(2R)-4-(hydroxyamino)-1-(naphthalen-2-yl)-4-oxobutan-2-yl]-1H-1,2,3-triazol-4-yl}methyl)-4-methylbenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBC CBB 1EF doub 1 n y CBC CAW 1EF sing 2 n y CAX CAW 1EF doub 3 n y CAX CAY 1EF sing 4 n y CBB CBA 1EF sing 5 n y CAW CAV 1EF sing 6 n y CAY CAT 1EF doub 7 n y CBA CAZ 1EF doub 8 n y CAV CAZ 1EF sing 9 n y CAV CAU 1EF doub 10 n y CAT CAU 1EF sing 11 n y CAT CAR 1EF sing 12 n n CAL CAK 1EF doub 13 n y CAL CAM 1EF sing 14 n y CAS CAQ 1EF sing 15 n n CAS CBD 1EF sing 16 n n CAP CAM 1EF sing 17 n n CAK CAI 1EF sing 18 n y CAQ CAR 1EF sing 19 n n CAQ NAB 1EF sing 20 n n OBE CBD 1EF doub 21 n n CBD NBF 1EF sing 22 n n CAM CAN 1EF doub 23 n y NAB CAC 1EF sing 24 n y NAB NAA 1EF sing 25 n y OAJ CAH 1EF doub 26 n n NBF OBG 1EF sing 27 n n CAI CAH 1EF sing 28 n n CAI CAO 1EF doub 29 n y CAC CAD 1EF doub 30 n y CAN CAO 1EF sing 31 n y CAH NAG 1EF sing 32 n n NAA NAE 1EF doub 33 n y CAD NAE 1EF sing 34 n y CAD CAF 1EF sing 35 n n NAG CAF 1EF sing 36 n n CAU H1 1EF sing 37 n n CAZ H2 1EF sing 38 n n CBA H3 1EF sing 39 n n CBB H4 1EF sing 40 n n CBC H5 1EF sing 41 n n CAX H6 1EF sing 42 n n CAY H7 1EF sing 43 n n CAR H8 1EF sing 44 n n CAR H9 1EF sing 45 n n CAQ H10 1EF sing 46 n n CAS H11 1EF sing 47 n n CAS H12 1EF sing 48 n n NBF H13 1EF sing 49 n n OBG H14 1EF sing 50 n n CAC H15 1EF sing 51 n n CAF H16 1EF sing 52 n n CAF H17 1EF sing 53 n n NAG H18 1EF sing 54 n n CAK H19 1EF sing 55 n n CAL H20 1EF sing 56 n n CAP H21 1EF sing 57 n n CAP H22 1EF sing 58 n n CAP H23 1EF sing 59 n n CAN H24 1EF sing 60 n n CAO H25 1EF sing 61 n n # _atom_sites.entry_id 4IFH _atom_sites.fract_transf_matrix[1][1] 0.003802 _atom_sites.fract_transf_matrix[1][2] 0.002195 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00439 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1101 2 ZN ZN . D 2 ZN B 1 1101 1 ZN ZN . E 3 1EF B 1 1102 1020 1EF OBD . F 4 HOH A 1 1201 3 HOH HOH . F 4 HOH A 2 1202 8 HOH HOH . F 4 HOH A 3 1203 16 HOH HOH . F 4 HOH A 4 1204 22 HOH HOH . F 4 HOH A 5 1205 29 HOH HOH . F 4 HOH A 6 1206 1020 HOH HOH . F 4 HOH A 7 1207 1021 HOH HOH . F 4 HOH A 8 1208 1022 HOH HOH . F 4 HOH A 9 1209 1023 HOH HOH . F 4 HOH A 10 1210 1024 HOH HOH . F 4 HOH A 11 1211 1025 HOH HOH . F 4 HOH A 12 1212 1026 HOH HOH . F 4 HOH A 13 1213 1027 HOH HOH . F 4 HOH A 14 1214 1028 HOH HOH . F 4 HOH A 15 1215 1029 HOH HOH . F 4 HOH A 16 1216 1030 HOH HOH . F 4 HOH A 17 1217 1031 HOH HOH . F 4 HOH A 18 1218 1032 HOH HOH . F 4 HOH A 19 1219 1033 HOH HOH . F 4 HOH A 20 1220 1034 HOH HOH . F 4 HOH A 21 1221 1035 HOH HOH . F 4 HOH A 22 1222 1036 HOH HOH . F 4 HOH A 23 1223 1037 HOH HOH . F 4 HOH A 24 1224 1038 HOH HOH . F 4 HOH A 25 1225 1039 HOH HOH . F 4 HOH A 26 1226 1040 HOH HOH . F 4 HOH A 27 1227 1041 HOH HOH . F 4 HOH A 28 1228 1042 HOH HOH . F 4 HOH A 29 1229 1043 HOH HOH . F 4 HOH A 30 1230 1044 HOH HOH . F 4 HOH A 31 1231 1045 HOH HOH . F 4 HOH A 32 1232 1046 HOH HOH . F 4 HOH A 33 1233 1047 HOH HOH . F 4 HOH A 34 1234 1048 HOH HOH . F 4 HOH A 35 1235 1049 HOH HOH . F 4 HOH A 36 1236 1050 HOH HOH . F 4 HOH A 37 1237 1051 HOH HOH . F 4 HOH A 38 1238 1052 HOH HOH . F 4 HOH A 39 1239 1053 HOH HOH . F 4 HOH A 40 1240 1054 HOH HOH . F 4 HOH A 41 1241 1055 HOH HOH . F 4 HOH A 42 1242 1056 HOH HOH . F 4 HOH A 43 1243 1057 HOH HOH . F 4 HOH A 44 1244 1058 HOH HOH . F 4 HOH A 45 1245 1059 HOH HOH . F 4 HOH A 46 1246 1060 HOH HOH . F 4 HOH A 47 1247 1061 HOH HOH . F 4 HOH A 48 1248 1062 HOH HOH . F 4 HOH A 49 1249 1063 HOH HOH . F 4 HOH A 50 1250 1064 HOH HOH . F 4 HOH A 51 1251 1065 HOH HOH . F 4 HOH A 52 1252 1066 HOH HOH . F 4 HOH A 53 1253 1067 HOH HOH . F 4 HOH A 54 1254 1068 HOH HOH . F 4 HOH A 55 1255 1069 HOH HOH . F 4 HOH A 56 1256 1070 HOH HOH . F 4 HOH A 57 1257 1071 HOH HOH . F 4 HOH A 58 1258 1072 HOH HOH . F 4 HOH A 59 1259 1073 HOH HOH . F 4 HOH A 60 1260 1074 HOH HOH . F 4 HOH A 61 1261 1075 HOH HOH . G 4 HOH B 1 1201 14 HOH HOH . G 4 HOH B 2 1202 28 HOH HOH . G 4 HOH B 3 1203 1021 HOH HOH . G 4 HOH B 4 1204 1022 HOH HOH . G 4 HOH B 5 1205 1023 HOH HOH . G 4 HOH B 6 1206 1024 HOH HOH . G 4 HOH B 7 1207 1025 HOH HOH . G 4 HOH B 8 1208 1026 HOH HOH . G 4 HOH B 9 1209 1027 HOH HOH . G 4 HOH B 10 1210 1028 HOH HOH . G 4 HOH B 11 1211 1029 HOH HOH . G 4 HOH B 12 1212 1030 HOH HOH . G 4 HOH B 13 1213 1031 HOH HOH . G 4 HOH B 14 1214 1032 HOH HOH . G 4 HOH B 15 1215 1033 HOH HOH . G 4 HOH B 16 1216 1034 HOH HOH . G 4 HOH B 17 1217 1035 HOH HOH . G 4 HOH B 18 1218 1036 HOH HOH . G 4 HOH B 19 1219 1037 HOH HOH . G 4 HOH B 20 1220 1038 HOH HOH . G 4 HOH B 21 1221 1039 HOH HOH . G 4 HOH B 22 1222 1040 HOH HOH . G 4 HOH B 23 1223 1041 HOH HOH . G 4 HOH B 24 1224 1042 HOH HOH . G 4 HOH B 25 1225 1043 HOH HOH . G 4 HOH B 26 1226 1044 HOH HOH . G 4 HOH B 27 1227 1045 HOH HOH . G 4 HOH B 28 1228 1046 HOH HOH . G 4 HOH B 29 1229 1047 HOH HOH . G 4 HOH B 30 1230 1048 HOH HOH . G 4 HOH B 31 1231 1049 HOH HOH . G 4 HOH B 32 1232 1050 HOH HOH . G 4 HOH B 33 1233 1051 HOH HOH . G 4 HOH B 34 1234 1052 HOH HOH . G 4 HOH B 35 1235 1053 HOH HOH . G 4 HOH B 36 1236 1054 HOH HOH . G 4 HOH B 37 1237 1055 HOH HOH . G 4 HOH B 38 1238 1056 HOH HOH . G 4 HOH B 39 1239 1057 HOH HOH . G 4 HOH B 40 1240 1058 HOH HOH . G 4 HOH B 41 1241 1059 HOH HOH . G 4 HOH B 42 1242 1060 HOH HOH . G 4 HOH B 43 1243 1061 HOH HOH . G 4 HOH B 44 1244 1062 HOH HOH . G 4 HOH B 45 1245 1063 HOH HOH . G 4 HOH B 46 1246 1065 HOH HOH . G 4 HOH B 47 1247 1066 HOH HOH . G 4 HOH B 48 1248 1067 HOH HOH . G 4 HOH B 49 1249 1068 HOH HOH . G 4 HOH B 50 1250 1069 HOH HOH . G 4 HOH B 51 1251 1070 HOH HOH . G 4 HOH B 52 1252 1071 HOH HOH . G 4 HOH B 53 1253 1072 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAU 1EF . . . E 3 99.995 -4.302 41.24 1 102.72 ? CAU 1EF 1102 B 1 HETATM 2 C CAV 1EF . . . E 3 99.636 -5.328 40.327 1 93.16 ? CAV 1EF 1102 B 1 HETATM 3 C CAZ 1EF . . . E 3 99.272 -6.633 40.817 1 77.24 ? CAZ 1EF 1102 B 1 HETATM 4 C CBA 1EF . . . E 3 98.911 -7.659 39.894 1 77.03 ? CBA 1EF 1102 B 1 HETATM 5 C CBB 1EF . . . E 3 98.913 -7.392 38.499 1 95.69 ? CBB 1EF 1102 B 1 HETATM 6 C CBC 1EF . . . E 3 99.271 -6.112 38.021 1 94.16 ? CBC 1EF 1102 B 1 HETATM 7 C CAW 1EF . . . E 3 99.637 -5.067 38.952 1 94.62 ? CAW 1EF 1102 B 1 HETATM 8 C CAX 1EF . . . E 3 100.002 -3.762 38.459 1 84.99 ? CAX 1EF 1102 B 1 HETATM 9 C CAY 1EF . . . E 3 100.353 -2.763 39.345 1 79.91 ? CAY 1EF 1102 B 1 HETATM 10 C CAT 1EF . . . E 3 100.351 -3.027 40.755 1 80.82 ? CAT 1EF 1102 B 1 HETATM 11 C CAR 1EF . . . E 3 100.745 -1.906 41.763 1 76.59 ? CAR 1EF 1102 B 1 HETATM 12 C CAQ 1EF . . . E 3 100.097 -0.544 41.404 1 81.52 ? CAQ 1EF 1102 B 1 HETATM 13 C CAS 1EF . . . E 3 101.123 0.443 40.941 1 72.28 ? CAS 1EF 1102 B 1 HETATM 14 C CBD 1EF . . . E 3 102.45 0.588 41.749 1 68.68 ? CBD 1EF 1102 B 1 HETATM 15 N NBF 1EF . . . E 3 102.657 1.736 42.553 1 66.86 ? NBF 1EF 1102 B 1 HETATM 16 O OBG 1EF . . . E 3 103.802 1.854 43.226 1 65.23 ? OBG 1EF 1102 B 1 HETATM 17 O OBE 1EF . . . E 3 103.346 -0.265 41.68 1 67.38 ? OBE 1EF 1102 B 1 HETATM 18 N NAB 1EF . . . E 3 99.372 -0.109 42.522 1 87.47 ? NAB 1EF 1102 B 1 HETATM 19 C CAC 1EF . . . E 3 98.233 -0.737 42.988 1 82.16 ? CAC 1EF 1102 B 1 HETATM 20 N NAA 1EF . . . E 3 99.648 0.914 43.287 1 80.19 ? NAA 1EF 1102 B 1 HETATM 21 N NAE 1EF . . . E 3 98.731 1.018 44.266 1 81.04 ? NAE 1EF 1102 B 1 HETATM 22 C CAD 1EF . . . E 3 97.813 0.02 44.144 1 80.89 ? CAD 1EF 1102 B 1 HETATM 23 C CAF 1EF . . . E 3 96.624 -0.225 45.021 1 81.19 ? CAF 1EF 1102 B 1 HETATM 24 N NAG 1EF . . . E 3 95.748 -1.246 44.522 1 82.9 ? NAG 1EF 1102 B 1 HETATM 25 C CAH 1EF . . . E 3 95.132 -1.134 43.23 1 85.3 ? CAH 1EF 1102 B 1 HETATM 26 O OAJ 1EF . . . E 3 95.354 -0.165 42.526 1 85.14 ? OAJ 1EF 1102 B 1 HETATM 27 C CAI 1EF . . . E 3 94.167 -2.26 42.707 1 101.28 ? CAI 1EF 1102 B 1 HETATM 28 C CAK 1EF . . . E 3 94.25 -2.735 41.374 1 97.28 ? CAK 1EF 1102 B 1 HETATM 29 C CAL 1EF . . . E 3 93.372 -3.744 40.933 1 83.2 ? CAL 1EF 1102 B 1 HETATM 30 C CAM 1EF . . . E 3 92.418 -4.27 41.799 1 79.95 ? CAM 1EF 1102 B 1 HETATM 31 C CAP 1EF . . . E 3 91.448 -5.378 41.316 1 77.43 ? CAP 1EF 1102 B 1 HETATM 32 C CAN 1EF . . . E 3 92.332 -3.797 43.118 1 81.06 ? CAN 1EF 1102 B 1 HETATM 33 C CAO 1EF . . . E 3 93.216 -2.789 43.563 1 92.49 ? CAO 1EF 1102 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 33 #