data_4IG6 # _model_server_result.job_id yIEZhi2K9RVRFJf62C3epg _model_server_result.datetime_utc '2025-07-30 20:43:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ig6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4IG6 # _exptl.entry_id 4IG6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IG6 _cell.length_a 105.11 _cell.length_b 105.11 _cell.length_c 92.25 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IG6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -46.125 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 4IG6 _atom_sites.fract_transf_matrix[1][1] 0.009514 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01084 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 301 225 SAH SAH . C 3 CL A 1 302 1 CL CL . D 3 CL A 1 303 2 CL CL . E 4 HOH A 1 401 1 HOH HOH . E 4 HOH A 2 402 2 HOH HOH . E 4 HOH A 3 403 3 HOH HOH . E 4 HOH A 4 404 4 HOH HOH . E 4 HOH A 5 405 5 HOH HOH . E 4 HOH A 6 406 6 HOH HOH . E 4 HOH A 7 407 7 HOH HOH . E 4 HOH A 8 408 8 HOH HOH . E 4 HOH A 9 409 9 HOH HOH . E 4 HOH A 10 410 10 HOH HOH . E 4 HOH A 11 411 11 HOH HOH . E 4 HOH A 12 412 12 HOH HOH . E 4 HOH A 13 413 13 HOH HOH . E 4 HOH A 14 414 14 HOH HOH . E 4 HOH A 15 415 15 HOH HOH . E 4 HOH A 16 416 16 HOH HOH . E 4 HOH A 17 417 17 HOH HOH . E 4 HOH A 18 418 18 HOH HOH . E 4 HOH A 19 419 19 HOH HOH . E 4 HOH A 20 420 20 HOH HOH . E 4 HOH A 21 421 21 HOH HOH . E 4 HOH A 22 422 22 HOH HOH . E 4 HOH A 23 423 23 HOH HOH . E 4 HOH A 24 424 24 HOH HOH . E 4 HOH A 25 425 25 HOH HOH . E 4 HOH A 26 426 26 HOH HOH . E 4 HOH A 27 427 27 HOH HOH . E 4 HOH A 28 428 28 HOH HOH . E 4 HOH A 29 429 29 HOH HOH . E 4 HOH A 30 430 30 HOH HOH . E 4 HOH A 31 431 31 HOH HOH . E 4 HOH A 32 432 32 HOH HOH . E 4 HOH A 33 433 33 HOH HOH . E 4 HOH A 34 434 34 HOH HOH . E 4 HOH A 35 435 35 HOH HOH . E 4 HOH A 36 436 36 HOH HOH . E 4 HOH A 37 437 37 HOH HOH . E 4 HOH A 38 438 38 HOH HOH . E 4 HOH A 39 439 39 HOH HOH . E 4 HOH A 40 440 40 HOH HOH . E 4 HOH A 41 441 41 HOH HOH . E 4 HOH A 42 442 42 HOH HOH . E 4 HOH A 43 443 43 HOH HOH . E 4 HOH A 44 444 44 HOH HOH . E 4 HOH A 45 445 45 HOH HOH . E 4 HOH A 46 446 46 HOH HOH . E 4 HOH A 47 447 47 HOH HOH . E 4 HOH A 48 448 48 HOH HOH . E 4 HOH A 49 449 49 HOH HOH . E 4 HOH A 50 450 50 HOH HOH . E 4 HOH A 51 451 51 HOH HOH . E 4 HOH A 52 452 52 HOH HOH . E 4 HOH A 53 453 53 HOH HOH . E 4 HOH A 54 454 54 HOH HOH . E 4 HOH A 55 455 55 HOH HOH . E 4 HOH A 56 456 56 HOH HOH . E 4 HOH A 57 457 57 HOH HOH . E 4 HOH A 58 458 58 HOH HOH . E 4 HOH A 59 459 59 HOH HOH . E 4 HOH A 60 460 60 HOH HOH . E 4 HOH A 61 461 61 HOH HOH . E 4 HOH A 62 462 62 HOH HOH . E 4 HOH A 63 463 63 HOH HOH . E 4 HOH A 64 464 64 HOH HOH . E 4 HOH A 65 465 65 HOH HOH . E 4 HOH A 66 466 66 HOH HOH . E 4 HOH A 67 467 67 HOH HOH . E 4 HOH A 68 468 68 HOH HOH . E 4 HOH A 69 469 69 HOH HOH . E 4 HOH A 70 470 70 HOH HOH . E 4 HOH A 71 471 71 HOH HOH . E 4 HOH A 72 472 72 HOH HOH . E 4 HOH A 73 473 73 HOH HOH . E 4 HOH A 74 474 74 HOH HOH . E 4 HOH A 75 475 75 HOH HOH . E 4 HOH A 76 476 76 HOH HOH . E 4 HOH A 77 477 77 HOH HOH . E 4 HOH A 78 478 78 HOH HOH . E 4 HOH A 79 479 79 HOH HOH . E 4 HOH A 80 480 80 HOH HOH . E 4 HOH A 81 481 81 HOH HOH . E 4 HOH A 82 482 82 HOH HOH . E 4 HOH A 83 483 83 HOH HOH . E 4 HOH A 84 484 84 HOH HOH . E 4 HOH A 85 485 85 HOH HOH . E 4 HOH A 86 486 86 HOH HOH . E 4 HOH A 87 487 87 HOH HOH . E 4 HOH A 88 488 88 HOH HOH . E 4 HOH A 89 489 89 HOH HOH . E 4 HOH A 90 490 90 HOH HOH . E 4 HOH A 91 491 91 HOH HOH . E 4 HOH A 92 492 92 HOH HOH . E 4 HOH A 93 493 93 HOH HOH . E 4 HOH A 94 494 94 HOH HOH . E 4 HOH A 95 495 95 HOH HOH . E 4 HOH A 96 496 96 HOH HOH . E 4 HOH A 97 497 97 HOH HOH . E 4 HOH A 98 498 98 HOH HOH . E 4 HOH A 99 499 99 HOH HOH . E 4 HOH A 100 500 100 HOH HOH . E 4 HOH A 101 501 101 HOH HOH . E 4 HOH A 102 502 102 HOH HOH . E 4 HOH A 103 503 103 HOH HOH . E 4 HOH A 104 504 104 HOH HOH . E 4 HOH A 105 505 105 HOH HOH . E 4 HOH A 106 506 106 HOH HOH . E 4 HOH A 107 507 107 HOH HOH . E 4 HOH A 108 508 108 HOH HOH . E 4 HOH A 109 509 109 HOH HOH . E 4 HOH A 110 510 110 HOH HOH . E 4 HOH A 111 511 111 HOH HOH . E 4 HOH A 112 512 112 HOH HOH . E 4 HOH A 113 513 113 HOH HOH . E 4 HOH A 114 514 114 HOH HOH . E 4 HOH A 115 515 115 HOH HOH . E 4 HOH A 116 516 116 HOH HOH . E 4 HOH A 117 517 117 HOH HOH . E 4 HOH A 118 518 118 HOH HOH . E 4 HOH A 119 519 119 HOH HOH . E 4 HOH A 120 520 120 HOH HOH . E 4 HOH A 121 521 121 HOH HOH . E 4 HOH A 122 522 122 HOH HOH . E 4 HOH A 123 523 123 HOH HOH . E 4 HOH A 124 524 124 HOH HOH . E 4 HOH A 125 525 125 HOH HOH . E 4 HOH A 126 526 126 HOH HOH . E 4 HOH A 127 527 127 HOH HOH . E 4 HOH A 128 528 128 HOH HOH . E 4 HOH A 129 529 129 HOH HOH . E 4 HOH A 130 530 130 HOH HOH . E 4 HOH A 131 531 131 HOH HOH . E 4 HOH A 132 532 132 HOH HOH . E 4 HOH A 133 533 133 HOH HOH . E 4 HOH A 134 534 134 HOH HOH . E 4 HOH A 135 535 135 HOH HOH . E 4 HOH A 136 536 136 HOH HOH . E 4 HOH A 137 537 137 HOH HOH . E 4 HOH A 138 538 138 HOH HOH . E 4 HOH A 139 539 139 HOH HOH . E 4 HOH A 140 540 140 HOH HOH . E 4 HOH A 141 541 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 -2.978 23.387 -32.343 1 31.1 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . B 2 -3.425 23.455 -30.911 1 31.17 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . B 2 -4.976 23.492 -30.853 1 29.47 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . B 2 -5.485 24.008 -29.498 1 27.79 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . B 2 -7.208 23.677 -29.399 1 25.42 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . B 2 -2.873 22.291 -30.125 1 31.59 ? C SAH 301 A 1 HETATM 7 O O SAH . . . B 2 -2.563 21.241 -30.698 1 31.09 ? O SAH 301 A 1 HETATM 8 O OXT SAH . . . B 2 -2.72 22.368 -28.895 1 32.76 ? OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . B 2 -7.8 25.027 -28.419 1 24.64 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . B 2 -7.997 24.667 -26.943 1 24.1 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . B 2 -8.948 23.61 -26.763 1 23.87 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . B 2 -6.753 24.2 -26.195 1 23.93 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . B 2 -5.901 25.273 -25.816 1 23.25 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . B 2 -7.334 23.452 -25.004 1 24.07 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . B 2 -7.729 24.288 -23.908 1 23.12 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . B 2 -8.59 22.88 -25.596 1 23.11 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . B 2 -8.483 21.459 -25.955 1 23.63 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . B 2 -8.494 20.915 -27.195 1 24.23 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . B 2 -8.464 19.568 -27.148 1 23.82 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . B 2 -8.451 19.278 -25.83 1 24.91 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . B 2 -8.432 18.051 -25.048 1 24.56 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . B 2 -8.402 16.898 -25.732 1 25.16 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . B 2 -8.447 18.138 -23.699 1 25.23 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . B 2 -8.473 19.319 -23.043 1 24.7 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . B 2 -8.475 20.488 -23.698 1 23.79 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . B 2 -8.468 20.507 -25.051 1 23.41 ? C4 SAH 301 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #