data_4IGO
#
_model_server_result.job_id            DsZRZsV8ug2b74myDlBQng 
_model_server_result.datetime_utc      '2024-11-22 16:22:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4igo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1001}' 
#
_entry.id    4IGO 
#
_exptl.entry_id    4IGO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              146.098 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-OXOGLUTARIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4IGO 
_cell.length_a            90.518 
_cell.length_b            90.518 
_cell.length_c            76.048 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4IGO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 256 A HIS 394 1_555 B FE FE . A FE 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc2 A OE2 GLU 258 A GLU 396 1_555 B FE FE . A FE 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? 
metalc ? metalc3 A NE2 HIS 344 A HIS 482 1_555 B FE FE . A FE 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc4 B FE FE . A FE 1000 1_555 C O2 AKG . A AKG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc5 B FE FE . A FE 1000 1_555 C O5 AKG . A AKG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
#
_chem_comp.formula           'C5 H6 O5' 
_chem_comp.formula_weight    146.098 
_chem_comp.id                AKG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-OXOGLUTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 AKG doub 1 n n 
C1 O2 AKG sing 2 n n 
C1 C2 AKG sing 3 n n 
O2 HO2 AKG sing 4 n n 
C2 O5 AKG doub 5 n n 
C2 C3 AKG sing 6 n n 
C3 C4 AKG sing 7 n n 
C3 H31 AKG sing 8 n n 
C3 H32 AKG sing 9 n n 
C4 C5 AKG sing 10 n n 
C4 H41 AKG sing 11 n n 
C4 H42 AKG sing 12 n n 
C5 O3 AKG doub 13 n n 
C5 O4 AKG sing 14 n n 
O4 HO4 AKG sing 15 n n 
#
_atom_sites.entry_id                     4IGO 
_atom_sites.fract_transf_matrix[1][1]    0.011048 
_atom_sites.fract_transf_matrix[1][2]    0.006378 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012757 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01315 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE A 1 1000 1000 FE FE . 
C 3 AKG A 1 1001 1001 AKG AKG . 
D 4 HOH A 1 1101 1 HOH HOH . 
D 4 HOH A 2 1102 2 HOH HOH . 
D 4 HOH A 3 1103 3 HOH HOH . 
D 4 HOH A 4 1104 4 HOH HOH . 
D 4 HOH A 5 1105 5 HOH HOH . 
D 4 HOH A 6 1106 6 HOH HOH . 
D 4 HOH A 7 1107 7 HOH HOH . 
D 4 HOH A 8 1108 8 HOH HOH . 
D 4 HOH A 9 1109 9 HOH HOH . 
D 4 HOH A 10 1110 10 HOH HOH . 
D 4 HOH A 11 1111 11 HOH HOH . 
D 4 HOH A 12 1112 12 HOH HOH . 
D 4 HOH A 13 1113 13 HOH HOH . 
D 4 HOH A 14 1114 14 HOH HOH . 
D 4 HOH A 15 1115 15 HOH HOH . 
D 4 HOH A 16 1116 16 HOH HOH . 
D 4 HOH A 17 1117 17 HOH HOH . 
D 4 HOH A 18 1118 18 HOH HOH . 
D 4 HOH A 19 1119 19 HOH HOH . 
D 4 HOH A 20 1120 20 HOH HOH . 
D 4 HOH A 21 1121 21 HOH HOH . 
D 4 HOH A 22 1122 22 HOH HOH . 
D 4 HOH A 23 1123 23 HOH HOH . 
D 4 HOH A 24 1124 24 HOH HOH . 
D 4 HOH A 25 1125 25 HOH HOH . 
D 4 HOH A 26 1126 27 HOH HOH . 
D 4 HOH A 27 1127 28 HOH HOH . 
D 4 HOH A 28 1128 29 HOH HOH . 
D 4 HOH A 29 1129 30 HOH HOH . 
D 4 HOH A 30 1130 31 HOH HOH . 
D 4 HOH A 31 1131 32 HOH HOH . 
D 4 HOH A 32 1132 33 HOH HOH . 
D 4 HOH A 33 1133 34 HOH HOH . 
D 4 HOH A 34 1134 35 HOH HOH . 
D 4 HOH A 35 1135 36 HOH HOH . 
D 4 HOH A 36 1136 37 HOH HOH . 
D 4 HOH A 37 1137 38 HOH HOH . 
D 4 HOH A 38 1138 39 HOH HOH . 
D 4 HOH A 39 1139 40 HOH HOH . 
D 4 HOH A 40 1140 41 HOH HOH . 
D 4 HOH A 41 1141 42 HOH HOH . 
D 4 HOH A 42 1142 43 HOH HOH . 
D 4 HOH A 43 1143 44 HOH HOH . 
D 4 HOH A 44 1144 45 HOH HOH . 
D 4 HOH A 45 1145 46 HOH HOH . 
D 4 HOH A 46 1146 47 HOH HOH . 
D 4 HOH A 47 1147 48 HOH HOH . 
D 4 HOH A 48 1148 49 HOH HOH . 
D 4 HOH A 49 1149 50 HOH HOH . 
D 4 HOH A 50 1150 51 HOH HOH . 
D 4 HOH A 51 1151 52 HOH HOH . 
D 4 HOH A 52 1152 53 HOH HOH . 
D 4 HOH A 53 1153 54 HOH HOH . 
D 4 HOH A 54 1154 55 HOH HOH . 
D 4 HOH A 55 1155 56 HOH HOH . 
D 4 HOH A 56 1156 57 HOH HOH . 
D 4 HOH A 57 1157 58 HOH HOH . 
D 4 HOH A 58 1158 59 HOH HOH . 
D 4 HOH A 59 1159 60 HOH HOH . 
D 4 HOH A 60 1160 61 HOH HOH . 
D 4 HOH A 61 1161 62 HOH HOH . 
D 4 HOH A 62 1162 63 HOH HOH . 
D 4 HOH A 63 1163 64 HOH HOH . 
D 4 HOH A 64 1164 65 HOH HOH . 
D 4 HOH A 65 1165 66 HOH HOH . 
D 4 HOH A 66 1166 67 HOH HOH . 
D 4 HOH A 67 1167 68 HOH HOH . 
D 4 HOH A 68 1168 69 HOH HOH . 
D 4 HOH A 69 1169 70 HOH HOH . 
D 4 HOH A 70 1170 71 HOH HOH . 
D 4 HOH A 71 1171 72 HOH HOH . 
D 4 HOH A 72 1172 73 HOH HOH . 
D 4 HOH A 73 1173 74 HOH HOH . 
D 4 HOH A 74 1174 75 HOH HOH . 
D 4 HOH A 75 1175 76 HOH HOH . 
D 4 HOH A 76 1176 77 HOH HOH . 
D 4 HOH A 77 1177 78 HOH HOH . 
D 4 HOH A 78 1178 79 HOH HOH . 
D 4 HOH A 79 1179 80 HOH HOH . 
D 4 HOH A 80 1180 81 HOH HOH . 
D 4 HOH A 81 1181 82 HOH HOH . 
D 4 HOH A 82 1182 83 HOH HOH . 
D 4 HOH A 83 1183 84 HOH HOH . 
D 4 HOH A 84 1184 85 HOH HOH . 
D 4 HOH A 85 1185 86 HOH HOH . 
D 4 HOH A 86 1186 87 HOH HOH . 
D 4 HOH A 87 1187 88 HOH HOH . 
D 4 HOH A 88 1188 89 HOH HOH . 
D 4 HOH A 89 1189 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AKG . . . C 3 18.496 28.016 17.123 1 67.5 ? C1 AKG 1001 A 1 
HETATM 2 O O1 AKG . . . C 3 17.986 27.003 16.574 1 67.71 ? O1 AKG 1001 A 1 
HETATM 3 O O2 AKG . . . C 3 19.073 27.919 18.246 1 61.78 ? O2 AKG 1001 A 1 
HETATM 4 C C2 AKG . . . C 3 18.399 29.332 16.428 1 70.73 ? C2 AKG 1001 A 1 
HETATM 5 O O5 AKG . . . C 3 17.659 30.2 16.875 1 69.17 ? O5 AKG 1001 A 1 
HETATM 6 C C3 AKG . . . C 3 19.19 29.577 15.188 1 72.19 ? C3 AKG 1001 A 1 
HETATM 7 C C4 AKG . . . C 3 18.44 29.437 13.895 1 75.67 ? C4 AKG 1001 A 1 
HETATM 8 C C5 AKG . . . C 3 19.184 29.387 12.589 1 75.6 ? C5 AKG 1001 A 1 
HETATM 9 O O3 AKG . . . C 3 20.093 28.514 12.409 1 73.57 ? O3 AKG 1001 A 1 
HETATM 10 O O4 AKG . . . C 3 18.888 30.213 11.669 1 69.65 ? O4 AKG 1001 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#