data_4IHG # _model_server_result.job_id Cu1jeuWAmZrK8s-YLqByIw _model_server_result.datetime_utc '2024-10-19 10:18:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ihg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":101}' # _entry.id 4IHG # _exptl.entry_id 4IHG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.348 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-PHOSPHOPANTETHEINE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 104.09 _cell.angle_beta 92.58 _cell.angle_gamma 118.64 _cell.entry_id 4IHG _cell.length_a 84.18 _cell.length_b 89.31 _cell.length_c 111.933 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IHG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,M,N,O,P,U,V,W,AA,BA,CA 1 1 D,E,F,J,K,L,Q,R,S,T,X,Y,Z,DA,EA,FA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 U N N ? 4 V N N ? 4 W N N ? 4 X N N ? 4 Y N N ? 4 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G OG SER 39 G SER 36 1_555 U P24 PNS . G PNS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.296 ? covale ? covale2 H OG SER 39 H SER 36 1_555 V P24 PNS . H PNS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale3 I OG SER 39 I SER 36 1_555 W P24 PNS . I PNS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.59 ? covale ? covale4 J OG SER 39 J SER 36 1_555 X P24 PNS . J PNS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? covale ? covale5 K OG SER 39 K SER 36 1_555 Y P24 PNS . K PNS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? covale ? covale6 L OG SER 39 L SER 36 1_555 Z P24 PNS . L PNS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.686 ? # _chem_comp.formula 'C11 H23 N2 O7 P S' _chem_comp.formula_weight 358.348 _chem_comp.id PNS _chem_comp.mon_nstd_flag . _chem_comp.name "4'-PHOSPHOPANTETHEINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4IHG _atom_sites.fract_transf_matrix[1][1] 0.011879 _atom_sites.fract_transf_matrix[1][2] 0.006488 _atom_sites.fract_transf_matrix[1][3] 0.002619 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012758 _atom_sites.fract_transf_matrix[2][3] 0.004046 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 FTT A 1 401 4 FTT HMY . N 3 FTT B 1 401 5 FTT HMY . O 3 FTT B 1 402 7 FTT HMY . P 3 FTT C 1 401 6 FTT HMY . Q 3 FTT D 1 401 3 FTT HMY . R 3 FTT E 1 401 2 FTT HMY . S 3 FTT E 1 402 8 FTT HMY . T 3 FTT F 1 401 1 FTT HMY . U 4 PNS G 1 101 307 PNS SXM . V 4 PNS H 1 101 307 PNS SXM . W 4 PNS I 1 101 307 PNS SXM . X 4 PNS J 1 101 307 PNS SXM . Y 4 PNS K 1 101 307 PNS SXM . Z 4 PNS L 1 101 307 PNS SXM . AA 5 HOH A 1 501 8 HOH HOH . AA 5 HOH A 2 502 16 HOH HOH . AA 5 HOH A 3 503 17 HOH HOH . AA 5 HOH A 4 504 18 HOH HOH . AA 5 HOH A 5 505 20 HOH HOH . AA 5 HOH A 6 506 21 HOH HOH . AA 5 HOH A 7 507 26 HOH HOH . AA 5 HOH A 8 508 35 HOH HOH . AA 5 HOH A 9 509 37 HOH HOH . AA 5 HOH A 10 510 38 HOH HOH . AA 5 HOH A 11 511 39 HOH HOH . AA 5 HOH A 12 512 57 HOH HOH . AA 5 HOH A 13 513 58 HOH HOH . AA 5 HOH A 14 514 63 HOH HOH . AA 5 HOH A 15 515 69 HOH HOH . AA 5 HOH A 16 516 70 HOH HOH . AA 5 HOH A 17 517 74 HOH HOH . AA 5 HOH A 18 518 79 HOH HOH . AA 5 HOH A 19 519 80 HOH HOH . AA 5 HOH A 20 520 82 HOH HOH . AA 5 HOH A 21 521 89 HOH HOH . AA 5 HOH A 22 522 92 HOH HOH . AA 5 HOH A 23 523 99 HOH HOH . AA 5 HOH A 24 524 100 HOH HOH . AA 5 HOH A 25 525 107 HOH HOH . AA 5 HOH A 26 526 122 HOH HOH . AA 5 HOH A 27 527 123 HOH HOH . AA 5 HOH A 28 528 126 HOH HOH . AA 5 HOH A 29 529 130 HOH HOH . BA 5 HOH B 1 501 3 HOH HOH . BA 5 HOH B 2 502 19 HOH HOH . BA 5 HOH B 3 503 23 HOH HOH . BA 5 HOH B 4 504 24 HOH HOH . BA 5 HOH B 5 505 33 HOH HOH . BA 5 HOH B 6 506 34 HOH HOH . BA 5 HOH B 7 507 36 HOH HOH . BA 5 HOH B 8 508 53 HOH HOH . BA 5 HOH B 9 509 71 HOH HOH . BA 5 HOH B 10 510 87 HOH HOH . BA 5 HOH B 11 511 88 HOH HOH . BA 5 HOH B 12 512 94 HOH HOH . BA 5 HOH B 13 513 104 HOH HOH . BA 5 HOH B 14 514 110 HOH HOH . BA 5 HOH B 15 515 117 HOH HOH . BA 5 HOH B 16 516 124 HOH HOH . BA 5 HOH B 17 517 125 HOH HOH . BA 5 HOH B 18 518 128 HOH HOH . BA 5 HOH B 19 519 131 HOH HOH . BA 5 HOH B 20 520 132 HOH HOH . BA 5 HOH B 21 521 134 HOH HOH . BA 5 HOH B 22 522 138 HOH HOH . CA 5 HOH C 1 501 1 HOH HOH . CA 5 HOH C 2 502 4 HOH HOH . CA 5 HOH C 3 503 11 HOH HOH . CA 5 HOH C 4 504 12 HOH HOH . CA 5 HOH C 5 505 13 HOH HOH . CA 5 HOH C 6 506 14 HOH HOH . CA 5 HOH C 7 507 15 HOH HOH . CA 5 HOH C 8 508 40 HOH HOH . CA 5 HOH C 9 509 46 HOH HOH . CA 5 HOH C 10 510 55 HOH HOH . CA 5 HOH C 11 511 67 HOH HOH . CA 5 HOH C 12 512 73 HOH HOH . CA 5 HOH C 13 513 95 HOH HOH . CA 5 HOH C 14 514 103 HOH HOH . CA 5 HOH C 15 515 114 HOH HOH . CA 5 HOH C 16 516 116 HOH HOH . CA 5 HOH C 17 517 118 HOH HOH . CA 5 HOH C 18 518 120 HOH HOH . CA 5 HOH C 19 519 135 HOH HOH . CA 5 HOH C 20 520 136 HOH HOH . DA 5 HOH D 1 501 10 HOH HOH . DA 5 HOH D 2 502 29 HOH HOH . DA 5 HOH D 3 503 32 HOH HOH . DA 5 HOH D 4 504 49 HOH HOH . DA 5 HOH D 5 505 50 HOH HOH . DA 5 HOH D 6 506 61 HOH HOH . DA 5 HOH D 7 507 62 HOH HOH . DA 5 HOH D 8 508 85 HOH HOH . DA 5 HOH D 9 509 98 HOH HOH . DA 5 HOH D 10 510 106 HOH HOH . DA 5 HOH D 11 511 113 HOH HOH . DA 5 HOH D 12 512 127 HOH HOH . DA 5 HOH D 13 513 129 HOH HOH . DA 5 HOH D 14 514 133 HOH HOH . DA 5 HOH D 15 515 142 HOH HOH . EA 5 HOH E 1 501 5 HOH HOH . EA 5 HOH E 2 502 22 HOH HOH . EA 5 HOH E 3 503 25 HOH HOH . EA 5 HOH E 4 504 28 HOH HOH . EA 5 HOH E 5 505 41 HOH HOH . EA 5 HOH E 6 506 42 HOH HOH . EA 5 HOH E 7 507 43 HOH HOH . EA 5 HOH E 8 508 44 HOH HOH . EA 5 HOH E 9 509 45 HOH HOH . EA 5 HOH E 10 510 48 HOH HOH . EA 5 HOH E 11 511 51 HOH HOH . EA 5 HOH E 12 512 56 HOH HOH . EA 5 HOH E 13 513 59 HOH HOH . EA 5 HOH E 14 514 65 HOH HOH . EA 5 HOH E 15 515 66 HOH HOH . EA 5 HOH E 16 516 72 HOH HOH . EA 5 HOH E 17 517 76 HOH HOH . EA 5 HOH E 18 518 78 HOH HOH . EA 5 HOH E 19 519 83 HOH HOH . EA 5 HOH E 20 520 86 HOH HOH . EA 5 HOH E 21 521 93 HOH HOH . EA 5 HOH E 22 522 96 HOH HOH . EA 5 HOH E 23 523 101 HOH HOH . EA 5 HOH E 24 524 102 HOH HOH . EA 5 HOH E 25 525 105 HOH HOH . EA 5 HOH E 26 526 108 HOH HOH . EA 5 HOH E 27 527 115 HOH HOH . EA 5 HOH E 28 528 121 HOH HOH . EA 5 HOH E 29 529 137 HOH HOH . EA 5 HOH E 30 530 140 HOH HOH . EA 5 HOH E 31 531 141 HOH HOH . EA 5 HOH E 32 532 145 HOH HOH . FA 5 HOH F 1 501 2 HOH HOH . FA 5 HOH F 2 502 6 HOH HOH . FA 5 HOH F 3 503 7 HOH HOH . FA 5 HOH F 4 504 27 HOH HOH . FA 5 HOH F 5 505 30 HOH HOH . FA 5 HOH F 6 506 31 HOH HOH . FA 5 HOH F 7 507 47 HOH HOH . FA 5 HOH F 8 508 52 HOH HOH . FA 5 HOH F 9 509 54 HOH HOH . FA 5 HOH F 10 510 60 HOH HOH . FA 5 HOH F 11 511 64 HOH HOH . FA 5 HOH F 12 512 68 HOH HOH . FA 5 HOH F 13 513 75 HOH HOH . FA 5 HOH F 14 514 77 HOH HOH . FA 5 HOH F 15 515 81 HOH HOH . FA 5 HOH F 16 516 84 HOH HOH . FA 5 HOH F 17 517 90 HOH HOH . FA 5 HOH F 18 518 91 HOH HOH . FA 5 HOH F 19 519 97 HOH HOH . FA 5 HOH F 20 520 109 HOH HOH . FA 5 HOH F 21 521 111 HOH HOH . FA 5 HOH F 22 522 112 HOH HOH . FA 5 HOH F 23 523 119 HOH HOH . FA 5 HOH F 24 524 139 HOH HOH . FA 5 HOH F 25 525 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O23 PNS . . . Y 4 -44.027 22.545 -1.095 1 39.47 ? O23 PNS 101 K 1 HETATM 2 P P24 PNS . . . Y 4 -45.547 22.306 -0.947 1 38.39 ? P24 PNS 101 K 1 HETATM 3 O O25 PNS . . . Y 4 -46.228 22.984 -2.16 1 40.8 ? O25 PNS 101 K 1 HETATM 4 O O27 PNS . . . Y 4 -45.855 20.783 -1.048 1 37.29 ? O27 PNS 101 K 1 HETATM 5 C C28 PNS . . . Y 4 -44.997 19.761 -0.671 1 37.11 ? C28 PNS 101 K 1 HETATM 6 C C29 PNS . . . Y 4 -44.114 19.051 -1.666 1 35.83 ? C29 PNS 101 K 1 HETATM 7 C C30 PNS . . . Y 4 -43.366 17.958 -0.972 1 36.46 ? C30 PNS 101 K 1 HETATM 8 C C31 PNS . . . Y 4 -44.993 18.432 -2.711 1 36.48 ? C31 PNS 101 K 1 HETATM 9 C C32 PNS . . . Y 4 -43.148 20.028 -2.275 1 35.84 ? C32 PNS 101 K 1 HETATM 10 O O33 PNS . . . Y 4 -42.466 20.667 -1.261 1 35.13 ? O33 PNS 101 K 1 HETATM 11 C C34 PNS . . . Y 4 -42.116 19.47 -3.218 1 35.67 ? C34 PNS 101 K 1 HETATM 12 O O35 PNS . . . Y 4 -42.447 18.929 -4.261 1 34.92 ? O35 PNS 101 K 1 HETATM 13 N N36 PNS . . . Y 4 -40.714 19.584 -2.937 1 35.98 ? N36 PNS 101 K 1 HETATM 14 C C37 PNS . . . Y 4 -39.742 19.084 -3.874 1 35.79 ? C37 PNS 101 K 1 HETATM 15 C C38 PNS . . . Y 4 -39.44 17.63 -4.009 1 35.29 ? C38 PNS 101 K 1 HETATM 16 C C39 PNS . . . Y 4 -38.197 17.269 -4.762 1 34.25 ? C39 PNS 101 K 1 HETATM 17 O O40 PNS . . . Y 4 -38.251 16.594 -5.781 1 32.87 ? O40 PNS 101 K 1 HETATM 18 N N41 PNS . . . Y 4 -36.942 17.738 -4.26 1 36.2 ? N41 PNS 101 K 1 HETATM 19 C C42 PNS . . . Y 4 -35.691 17.475 -4.912 1 35.93 ? C42 PNS 101 K 1 HETATM 20 C C43 PNS . . . Y 4 -34.899 18.697 -5.234 1 35.63 ? C43 PNS 101 K 1 HETATM 21 S S44 PNS . . . Y 4 -33.193 18.521 -5.639 1 51.48 ? S44 PNS 101 K 1 HETATM 22 H H282 PNS . . . Y 4 -44.438 20.096 0.052 1 44.53 ? H282 PNS 101 K 1 HETATM 23 H H281 PNS . . . Y 4 -45.578 19.073 -0.302 1 44.53 ? H281 PNS 101 K 1 HETATM 24 H H303 PNS . . . Y 4 -43.936 17.551 -0.295 1 43.75 ? H303 PNS 101 K 1 HETATM 25 H H302 PNS . . . Y 4 -43.105 17.281 -1.622 1 43.75 ? H302 PNS 101 K 1 HETATM 26 H H301 PNS . . . Y 4 -42.57 18.324 -0.549 1 43.75 ? H301 PNS 101 K 1 HETATM 27 H H313 PNS . . . Y 4 -44.454 17.891 -3.316 1 43.77 ? H313 PNS 101 K 1 HETATM 28 H H312 PNS . . . Y 4 -45.439 19.134 -3.218 1 43.77 ? H312 PNS 101 K 1 HETATM 29 H H311 PNS . . . Y 4 -45.661 17.869 -2.28 1 43.77 ? H311 PNS 101 K 1 HETATM 30 H H32 PNS . . . Y 4 -43.665 20.694 -2.759 1 43.01 ? H32 PNS 101 K 1 HETATM 31 H H33 PNS . . . Y 4 -41.894 21.246 -1.61 1 42.15 ? H33 PNS 101 K 1 HETATM 32 H H36 PNS . . . Y 4 -40.436 19.993 -2.177 1 43.18 ? H36 PNS 101 K 1 HETATM 33 H H372 PNS . . . Y 4 -40.036 19.387 -4.75 1 42.95 ? H372 PNS 101 K 1 HETATM 34 H H371 PNS . . . Y 4 -38.898 19.531 -3.687 1 42.95 ? H371 PNS 101 K 1 HETATM 35 H H382 PNS . . . Y 4 -40.182 17.244 -4.503 1 42.35 ? H382 PNS 101 K 1 HETATM 36 H H381 PNS . . . Y 4 -39.415 17.224 -3.126 1 42.35 ? H381 PNS 101 K 1 HETATM 37 H H41 PNS . . . Y 4 -36.939 18.248 -3.51 1 43.44 ? H41 PNS 101 K 1 HETATM 38 H H422 PNS . . . Y 4 -35.876 17 -5.742 1 43.12 ? H422 PNS 101 K 1 HETATM 39 H H421 PNS . . . Y 4 -35.157 16.903 -4.334 1 43.12 ? H421 PNS 101 K 1 HETATM 40 H H431 PNS . . . Y 4 -35.331 19.131 -5.99 1 42.76 ? H431 PNS 101 K 1 HETATM 41 H H432 PNS . . . Y 4 -34.962 19.298 -4.473 1 42.76 ? H432 PNS 101 K 1 HETATM 42 H H44 PNS . . . Y 4 -32.726 19.589 -5.858 1 61.78 ? H44 PNS 101 K 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 42 #