data_4II4 # _model_server_result.job_id xoqXsbnFmcsk5RmF-LfUaw _model_server_result.datetime_utc '2024-10-12 19:21:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ii4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4II4 # _exptl.entry_id 4II4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 871.64 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'benzoyl coenzyme A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4II4 _cell.length_a 77.595 _cell.length_b 77.595 _cell.length_c 304.692 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4II4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1,2 B,F 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_465 y-1,x+1,-z 0 1 0 1 0 0 0 0 -1 -77.595 77.595 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H40 N7 O17 P3 S' _chem_comp.formula_weight 871.64 _chem_comp.id BYC _chem_comp.mon_nstd_flag . _chem_comp.name 'benzoyl coenzyme A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6A N1A BYC doub 70 n y N1A C2A BYC sing 71 n y O1A P1A BYC doub 72 n n O2A P1A BYC sing 73 n n P1A O3A BYC sing 74 n n P1A O5D BYC sing 75 n n S1P C1B BYC sing 76 n n C1B O57 BYC doub 77 n n C1B C2B BYC sing 78 n n C2D C1D BYC sing 79 n n O4D C1D BYC sing 80 n n C1D N9A BYC sing 81 n n C1D H1D BYC sing 82 n n C2P S1P BYC sing 83 n n N3A C2A BYC doub 84 n y C2A H2A BYC sing 85 n n O2A HO2A BYC sing 86 n n O5A P2A BYC doub 87 n n P2A O6A BYC sing 88 n n P2A O4A BYC sing 89 n n P2A O3A BYC sing 90 n n C3B C2B BYC doub 91 n y C2B C7B BYC sing 92 n y C3D C2D BYC sing 93 n n C2D O2D BYC sing 94 n n C2D H2D BYC sing 95 n n O2D HO2D BYC sing 96 n n C3P C2P BYC sing 97 n n C2P H2P BYC sing 98 n n C2P H2PA BYC sing 99 n n C4A N3A BYC sing 100 n y C3B C4B BYC sing 101 n y C3B H3B BYC sing 102 n n C3D C4D BYC sing 103 n n C3D O3D BYC sing 104 n n C3D H3D BYC sing 105 n n P3D O3D BYC sing 106 n n O8A P3D BYC doub 107 n n P3D O9A BYC sing 108 n n P3D O7A BYC sing 109 n n N4P C3P BYC sing 110 n n C3P H3P BYC sing 111 n n C3P H3PA BYC sing 112 n n N9A C4A BYC sing 113 n y C5M C4A BYC doub 114 n y O4A HO4A BYC sing 115 n n C4B C5B BYC doub 116 n y C4B H4B BYC sing 117 n n C5D C4D BYC sing 118 n n C4D O4D BYC sing 119 n n C4D H4D BYC sing 120 n n C5P N4P BYC sing 121 n n N4P HN4P BYC sing 122 n n C5B C6B BYC sing 123 n y C5B H5B BYC sing 124 n n O5D C5D BYC sing 125 n n C5D H5D BYC sing 126 n n C5D H5DA BYC sing 127 n n N7A C5M BYC sing 128 n y C5M C6A BYC sing 129 n y C6P C5P BYC sing 130 n n C5P O5P BYC doub 131 n n N6A C6A BYC sing 132 n n N6A HN6A BYC sing 133 n n N6A HN6B BYC sing 134 n n O6A CCP BYC sing 135 n n C7B C6B BYC doub 136 n y C6B H6B BYC sing 137 n n C7P C6P BYC sing 138 n n C6P H6P BYC sing 139 n n C6P H6PA BYC sing 140 n n C8A N7A BYC doub 141 n y O7A HO7A BYC sing 142 n n C7B H7B BYC sing 143 n n N8P C7P BYC sing 144 n n C7P H7P BYC sing 145 n n C7P H7PA BYC sing 146 n n C8A N9A BYC sing 147 n y C8A H8A BYC sing 148 n n C9P N8P BYC sing 149 n n N8P HN8P BYC sing 150 n n O9A HO9A BYC sing 151 n n O9P C9P BYC doub 152 n n CAP C9P BYC sing 153 n n CAP CBP BYC sing 154 n n CAP OAP BYC sing 155 n n CAP HAP BYC sing 156 n n OAP HOAP BYC sing 157 n n CEP CBP BYC sing 158 n n CCP CBP BYC sing 159 n n CBP CDP BYC sing 160 n n CCP HCP BYC sing 161 n n CCP HCPA BYC sing 162 n n CDP HDP BYC sing 163 n n CDP HDPA BYC sing 164 n n CDP HDPB BYC sing 165 n n CEP HEP BYC sing 166 n n CEP HEPA BYC sing 167 n n CEP HEPB BYC sing 168 n n # _atom_sites.entry_id 4II4 _atom_sites.fract_transf_matrix[1][1] 0.012887 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003282 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 BYC A 1 401 1 BYC BYC . E 4 HOH A 1 501 2 HOH HOH . E 4 HOH A 2 502 9 HOH HOH . E 4 HOH A 3 503 10 HOH HOH . E 4 HOH A 4 504 11 HOH HOH . E 4 HOH A 5 505 12 HOH HOH . E 4 HOH A 6 506 13 HOH HOH . E 4 HOH A 7 507 15 HOH HOH . E 4 HOH A 8 508 16 HOH HOH . E 4 HOH A 9 509 17 HOH HOH . F 4 HOH B 1 301 18 HOH HOH . F 4 HOH B 2 302 19 HOH HOH . F 4 HOH B 3 303 20 HOH HOH . F 4 HOH B 4 304 21 HOH HOH . G 4 HOH C 1 301 1 HOH HOH . G 4 HOH C 2 302 3 HOH HOH . G 4 HOH C 3 303 4 HOH HOH . G 4 HOH C 4 304 5 HOH HOH . G 4 HOH C 5 305 6 HOH HOH . G 4 HOH C 6 306 7 HOH HOH . G 4 HOH C 7 307 8 HOH HOH . G 4 HOH C 8 308 14 HOH HOH . G 4 HOH C 9 309 22 HOH HOH . G 4 HOH C 10 310 23 HOH HOH . G 4 HOH C 11 311 24 HOH HOH . G 4 HOH C 12 312 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A BYC . . . D 3 -37.229 52.252 -29.626 1 123.97 ? N1A BYC 401 A 1 HETATM 2 O O1A BYC . . . D 3 -36.655 56.621 -38.529 1 131.88 ? O1A BYC 401 A 1 HETATM 3 P P1A BYC . . . D 3 -36.759 55.69 -37.287 1 167.34 ? P1A BYC 401 A 1 HETATM 4 C C1B BYC . . . D 3 -32.659 43.856 -29.623 1 110.3 ? C1B BYC 401 A 1 HETATM 5 C C1D BYC . . . D 3 -36.15 55.83 -33.099 1 142.06 ? C1D BYC 401 A 1 HETATM 6 S S1P BYC . . . D 3 -33.646 45.217 -29.124 1 144.3 ? S1P BYC 401 A 1 HETATM 7 C C2A BYC . . . D 3 -36.497 53.356 -29.449 1 124.3 ? C2A BYC 401 A 1 HETATM 8 O O2A BYC . . . D 3 -37.576 54.537 -37.633 1 166.94 ? O2A BYC 401 A 1 HETATM 9 P P2A BYC . . . D 3 -34.699 53.932 -37.66 1 128.85 ? P2A BYC 401 A 1 HETATM 10 C C2D BYC . . . D 3 -34.997 55.789 -33.954 1 143.44 ? C2D BYC 401 A 1 HETATM 11 O O2D BYC . . . D 3 -33.912 55.256 -33.336 1 137.32 ? O2D BYC 401 A 1 HETATM 12 N N3A BYC . . . D 3 -36.278 54.232 -30.444 1 137.42 ? N3A BYC 401 A 1 HETATM 13 O O3A BYC . . . D 3 -35.312 55.175 -36.885 1 153 ? O3A BYC 401 A 1 HETATM 14 C C3D BYC . . . D 3 -34.789 57.236 -34.264 1 141.79 ? C3D BYC 401 A 1 HETATM 15 O O3D BYC . . . D 3 -34.09 57.743 -33.23 1 132.64 ? O3D BYC 401 A 1 HETATM 16 P P3D BYC . . . D 3 -32.797 58.64 -33.494 1 140.33 ? P3D BYC 401 A 1 HETATM 17 C C4A BYC . . . D 3 -36.802 54.011 -31.661 1 140.64 ? C4A BYC 401 A 1 HETATM 18 O O4A BYC . . . D 3 -33.211 53.847 -37.35 1 128.85 ? O4A BYC 401 A 1 HETATM 19 C C4D BYC . . . D 3 -36.248 57.734 -34.351 1 140.7 ? C4D BYC 401 A 1 HETATM 20 O O4D BYC . . . D 3 -36.914 56.907 -33.191 1 121.7 ? O4D BYC 401 A 1 HETATM 21 O O5A BYC . . . D 3 -34.895 54.088 -39.137 1 164.07 ? O5A BYC 401 A 1 HETATM 22 C C5D BYC . . . D 3 -36.964 57.737 -35.67 1 130.42 ? C5D BYC 401 A 1 HETATM 23 O O5D BYC . . . D 3 -37.364 56.45 -36.043 1 126.5 ? O5D BYC 401 A 1 HETATM 24 C C5M BYC . . . D 3 -37.574 52.868 -31.88 1 143.09 ? C5M BYC 401 A 1 HETATM 25 C C5P BYC . . . D 3 -33.493 47.798 -32.16 1 123.37 ? C5P BYC 401 A 1 HETATM 26 O O5P BYC . . . D 3 -32.458 48.545 -31.681 1 127.24 ? O5P BYC 401 A 1 HETATM 27 C C6A BYC . . . D 3 -37.779 51.981 -30.821 1 133.95 ? C6A BYC 401 A 1 HETATM 28 N N6A BYC . . . D 3 -38.537 50.839 -31.012 1 113.69 ? N6A BYC 401 A 1 HETATM 29 O O6A BYC . . . D 3 -35.48 52.588 -37.107 1 159.53 ? O6A BYC 401 A 1 HETATM 30 C C6P BYC . . . D 3 -33.015 46.975 -33.364 1 134.73 ? C6P BYC 401 A 1 HETATM 31 N N7A BYC . . . D 3 -37.974 52.884 -33.172 1 152.19 ? N7A BYC 401 A 1 HETATM 32 O O7A BYC . . . D 3 -32.721 59.559 -32.284 1 149.39 ? O7A BYC 401 A 1 HETATM 33 C C7P BYC . . . D 3 -31.75 47.65 -34.042 1 140.77 ? C7P BYC 401 A 1 HETATM 34 C C8A BYC . . . D 3 -37.479 53.985 -33.741 1 150.31 ? C8A BYC 401 A 1 HETATM 35 O O8A BYC . . . D 3 -33.047 59.478 -34.728 1 133.76 ? O8A BYC 401 A 1 HETATM 36 N N8P BYC . . . D 3 -32.129 48.938 -34.786 1 140 ? N8P BYC 401 A 1 HETATM 37 N N9A BYC . . . D 3 -36.762 54.678 -32.833 1 140 ? N9A BYC 401 A 1 HETATM 38 O O9A BYC . . . D 3 -31.545 57.8 -33.63 1 140.89 ? O9A BYC 401 A 1 HETATM 39 C C9P BYC . . . D 3 -32.933 48.878 -35.839 1 141.17 ? C9P BYC 401 A 1 HETATM 40 O O9P BYC . . . D 3 -33.38 47.876 -36.602 1 143.17 ? O9P BYC 401 A 1 HETATM 41 C CAP BYC . . . D 3 -33.438 50.21 -36.245 1 144.88 ? CAP BYC 401 A 1 HETATM 42 O OAP BYC . . . D 3 -32.69 51.133 -35.524 1 124.09 ? OAP BYC 401 A 1 HETATM 43 C CBP BYC . . . D 3 -34.898 50.51 -35.982 1 146.54 ? CBP BYC 401 A 1 HETATM 44 C CCP BYC . . . D 3 -35.071 52.026 -35.881 1 157.74 ? CCP BYC 401 A 1 HETATM 45 C CDP BYC . . . D 3 -35.346 49.887 -34.656 1 138.03 ? CDP BYC 401 A 1 HETATM 46 C CEP BYC . . . D 3 -35.731 49.98 -37.071 1 147.77 ? CEP BYC 401 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 46 #