data_4IIJ # _model_server_result.job_id tuQZ9L92cQlFm5rcboG6hw _model_server_result.datetime_utc '2024-11-05 10:51:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4iij # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":504}' # _entry.id 4IIJ # _exptl.entry_id 4IIJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IIJ _cell.length_a 103.53 _cell.length_b 155.91 _cell.length_c 181.02 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IIJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? metalc ? metalc3 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc4 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? metalc ? metalc5 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc7 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc8 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc9 H MG MG . A MG 502 1_555 U O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc10 H MG MG . A MG 502 1_555 U O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc11 H MG MG . A MG 502 1_555 U O HOH . A HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc12 H MG MG . A MG 502 1_555 U O HOH . A HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc13 B OE1 GLN 11 B GLN 11 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc14 B OE1 GLU 111 B GLU 113 1_555 M CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc15 K O1A GDP . B GDP 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc16 C OD2 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc17 C OD1 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc18 C O THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc19 C OG1 THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc20 C O GLY 44 C GLY 44 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc21 C OE2 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? metalc ? metalc22 C OE1 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc23 O O1G GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc24 O O1B GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? metalc ? metalc25 P MG MG . C MG 502 1_555 W O HOH . C HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc26 R O1A GDP . D GDP 600 1_555 S MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.808 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4IIJ _atom_sites.fract_transf_matrix[1][1] 0.009659 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005524 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 600 GTP GTP . H 6 MG A 1 502 601 MG MG . I 7 CA A 1 503 700 CA CA . J 8 CL A 1 504 800 CL CL . K 9 GDP B 1 501 600 GDP GDP . L 6 MG B 1 502 601 MG MG . M 7 CA B 1 503 700 CA CA . N 10 MES B 1 504 1 MES MES . O 5 GTP C 1 501 600 GTP GTP . P 6 MG C 1 502 601 MG MG . Q 7 CA C 1 503 700 CA CA . R 9 GDP D 1 600 600 GDP GDP . S 6 MG D 1 601 601 MG MG . T 6 MG F 1 401 702 MG MG . U 11 HOH A 1 601 1 HOH HOH . U 11 HOH A 2 602 5 HOH HOH . U 11 HOH A 3 603 18 HOH HOH . U 11 HOH A 4 604 19 HOH HOH . U 11 HOH A 5 605 24 HOH HOH . U 11 HOH A 6 606 32 HOH HOH . U 11 HOH A 7 607 35 HOH HOH . U 11 HOH A 8 608 39 HOH HOH . U 11 HOH A 9 609 43 HOH HOH . U 11 HOH A 10 610 50 HOH HOH . U 11 HOH A 11 611 51 HOH HOH . U 11 HOH A 12 612 52 HOH HOH . U 11 HOH A 13 613 53 HOH HOH . U 11 HOH A 14 614 66 HOH HOH . U 11 HOH A 15 615 76 HOH HOH . U 11 HOH A 16 616 77 HOH HOH . U 11 HOH A 17 617 78 HOH HOH . U 11 HOH A 18 618 79 HOH HOH . U 11 HOH A 19 619 80 HOH HOH . U 11 HOH A 20 620 81 HOH HOH . U 11 HOH A 21 621 82 HOH HOH . U 11 HOH A 22 622 83 HOH HOH . U 11 HOH A 23 623 84 HOH HOH . U 11 HOH A 24 624 85 HOH HOH . U 11 HOH A 25 625 86 HOH HOH . U 11 HOH A 26 626 87 HOH HOH . U 11 HOH A 27 627 89 HOH HOH . U 11 HOH A 28 628 91 HOH HOH . U 11 HOH A 29 629 94 HOH HOH . U 11 HOH A 30 630 95 HOH HOH . U 11 HOH A 31 631 96 HOH HOH . U 11 HOH A 32 632 97 HOH HOH . U 11 HOH A 33 633 98 HOH HOH . V 11 HOH B 1 601 2 HOH HOH . V 11 HOH B 2 602 8 HOH HOH . V 11 HOH B 3 603 23 HOH HOH . V 11 HOH B 4 604 26 HOH HOH . V 11 HOH B 5 605 29 HOH HOH . V 11 HOH B 6 606 33 HOH HOH . V 11 HOH B 7 607 37 HOH HOH . V 11 HOH B 8 608 40 HOH HOH . V 11 HOH B 9 609 46 HOH HOH . V 11 HOH B 10 610 63 HOH HOH . V 11 HOH B 11 611 65 HOH HOH . V 11 HOH B 12 612 88 HOH HOH . V 11 HOH B 13 613 90 HOH HOH . V 11 HOH B 14 614 92 HOH HOH . V 11 HOH B 15 615 99 HOH HOH . W 11 HOH C 1 601 3 HOH HOH . W 11 HOH C 2 602 4 HOH HOH . W 11 HOH C 3 603 6 HOH HOH . W 11 HOH C 4 604 7 HOH HOH . W 11 HOH C 5 605 9 HOH HOH . W 11 HOH C 6 606 12 HOH HOH . W 11 HOH C 7 607 14 HOH HOH . W 11 HOH C 8 608 15 HOH HOH . W 11 HOH C 9 609 16 HOH HOH . W 11 HOH C 10 610 17 HOH HOH . W 11 HOH C 11 611 22 HOH HOH . W 11 HOH C 12 612 25 HOH HOH . W 11 HOH C 13 613 27 HOH HOH . W 11 HOH C 14 614 31 HOH HOH . W 11 HOH C 15 615 34 HOH HOH . W 11 HOH C 16 616 36 HOH HOH . W 11 HOH C 17 617 38 HOH HOH . W 11 HOH C 18 618 41 HOH HOH . W 11 HOH C 19 619 42 HOH HOH . W 11 HOH C 20 620 44 HOH HOH . W 11 HOH C 21 621 48 HOH HOH . W 11 HOH C 22 622 54 HOH HOH . W 11 HOH C 23 623 55 HOH HOH . W 11 HOH C 24 624 56 HOH HOH . W 11 HOH C 25 625 59 HOH HOH . W 11 HOH C 26 626 60 HOH HOH . W 11 HOH C 27 627 61 HOH HOH . W 11 HOH C 28 628 67 HOH HOH . W 11 HOH C 29 629 68 HOH HOH . W 11 HOH C 30 630 69 HOH HOH . X 11 HOH D 1 701 20 HOH HOH . X 11 HOH D 2 702 45 HOH HOH . X 11 HOH D 3 703 47 HOH HOH . X 11 HOH D 4 704 71 HOH HOH . X 11 HOH D 5 705 74 HOH HOH . X 11 HOH D 6 706 75 HOH HOH . Y 11 HOH E 1 201 49 HOH HOH . Y 11 HOH E 2 202 64 HOH HOH . Z 11 HOH F 1 501 13 HOH HOH . Z 11 HOH F 2 502 28 HOH HOH . Z 11 HOH F 3 503 58 HOH HOH . Z 11 HOH F 4 504 70 HOH HOH . Z 11 HOH F 5 505 72 HOH HOH . Z 11 HOH F 6 506 93 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 8 _atom_site.Cartn_x 47.445 _atom_site.Cartn_y 86.929 _atom_site.Cartn_z 62.382 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 77.72 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 504 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #