data_4IJ0 # _model_server_result.job_id jWq2XxQo3lDRK3kYqkIT_A _model_server_result.datetime_utc '2024-11-01 05:37:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ij0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":103}' # _entry.id 4IJ0 # _exptl.entry_id 4IJ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 87.62 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'STRONTIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IJ0 _cell.length_a 24.6 _cell.length_b 41.23 _cell.length_c 63.07 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IJ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DC 3 A DC 3 1_555 A P C6G 4 A C6G 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.623 ? covale ? covale2 A O3' C6G 4 A C6G 4 1_555 A P DA 5 A DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.632 ? covale ? covale3 B O3' DC 3 B DC 15 1_555 B P C6G 4 B C6G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.658 ? covale ? covale4 B O3' C6G 4 B C6G 16 1_555 B P DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.592 ? metalc ? metalc1 C SR SR . A SR 101 1_555 G O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc2 C SR SR . A SR 101 1_555 G O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc3 C SR SR . A SR 101 1_555 G O HOH . A HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc4 C SR SR . A SR 101 1_555 G O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc5 C SR SR . A SR 101 1_555 G O HOH . A HOH 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc6 C SR SR . A SR 101 1_555 H O HOH . B HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc7 C SR SR . A SR 101 1_555 H O HOH . B HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc8 C SR SR . A SR 101 1_555 H O HOH . B HOH 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc9 D SR SR . A SR 102 1_555 G O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc10 D SR SR . A SR 102 1_555 G O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc11 D SR SR . A SR 102 1_555 G O HOH . A HOH 569 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc12 D SR SR . A SR 102 1_555 H O HOH . B HOH 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc13 D SR SR . A SR 102 1_555 H O HOH . B HOH 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc14 D SR SR . A SR 102 1_555 H O HOH . B HOH 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc15 E SR SR . A SR 103 1_555 G O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DA 5 A DA 5 1_555 B N3 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 DA 5 A DA 5 1_555 B O4 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DA 6 A DA 6 1_555 B N3 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N6 DA 6 A DA 6 1_555 B O4 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DT 7 A DT 7 1_555 B N1 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O4 DT 7 A DT 7 1_555 B N6 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DT 8 A DT 8 1_555 B N1 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O4 DT 8 A DT 8 1_555 B N6 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DC 11 A DC 11 1_555 B N1 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 DC 11 A DC 11 1_555 B O6 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 DC 11 A DC 11 1_555 B N2 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DG 12 A DG 12 1_555 B N3 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N2 DG 12 A DG 12 1_555 B O2 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O6 DG 12 A DG 12 1_555 B N4 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Sr 2' _chem_comp.formula_weight 87.62 _chem_comp.id SR _chem_comp.mon_nstd_flag . _chem_comp.name 'STRONTIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4IJ0 _atom_sites.fract_transf_matrix[1][1] 0.04065 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024254 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SR A 1 101 1 SR SR . D 2 SR A 1 102 2 SR SR . E 2 SR A 1 103 3 SR SR . F 3 HT B 1 101 59 HT HT . G 4 HOH A 1 501 501 HOH HOH . G 4 HOH A 2 502 503 HOH HOH . G 4 HOH A 3 503 512 HOH HOH . G 4 HOH A 4 504 513 HOH HOH . G 4 HOH A 5 505 516 HOH HOH . G 4 HOH A 6 506 517 HOH HOH . G 4 HOH A 7 507 518 HOH HOH . G 4 HOH A 8 508 524 HOH HOH . G 4 HOH A 9 509 28 HOH HOH . G 4 HOH A 10 510 33 HOH HOH . G 4 HOH A 11 511 43 HOH HOH . G 4 HOH A 12 512 44 HOH HOH . G 4 HOH A 13 513 52 HOH HOH . G 4 HOH A 14 514 56 HOH HOH . G 4 HOH A 15 515 62 HOH HOH . G 4 HOH A 16 516 72 HOH HOH . G 4 HOH A 17 517 87 HOH HOH . G 4 HOH A 18 518 120 HOH HOH . G 4 HOH A 19 519 122 HOH HOH . G 4 HOH A 20 520 131 HOH HOH . G 4 HOH A 21 521 133 HOH HOH . G 4 HOH A 22 522 136 HOH HOH . G 4 HOH A 23 523 138 HOH HOH . G 4 HOH A 24 524 139 HOH HOH . G 4 HOH A 25 525 142 HOH HOH . G 4 HOH A 26 526 144 HOH HOH . G 4 HOH A 27 527 150 HOH HOH . G 4 HOH A 28 528 153 HOH HOH . G 4 HOH A 29 529 160 HOH HOH . G 4 HOH A 30 530 162 HOH HOH . G 4 HOH A 31 531 164 HOH HOH . G 4 HOH A 32 532 168 HOH HOH . G 4 HOH A 33 533 169 HOH HOH . G 4 HOH A 34 534 170 HOH HOH . G 4 HOH A 35 535 179 HOH HOH . G 4 HOH A 36 536 186 HOH HOH . G 4 HOH A 37 537 529 HOH HOH . G 4 HOH A 38 538 530 HOH HOH . G 4 HOH A 39 539 535 HOH HOH . G 4 HOH A 40 540 538 HOH HOH . G 4 HOH A 41 541 551 HOH HOH . G 4 HOH A 42 542 557 HOH HOH . G 4 HOH A 43 543 558 HOH HOH . G 4 HOH A 44 544 559 HOH HOH . G 4 HOH A 45 545 568 HOH HOH . G 4 HOH A 46 546 569 HOH HOH . G 4 HOH A 47 547 580 HOH HOH . G 4 HOH A 48 548 595 HOH HOH . G 4 HOH A 49 549 597 HOH HOH . G 4 HOH A 50 550 599 HOH HOH . G 4 HOH A 51 551 603 HOH HOH . G 4 HOH A 52 552 604 HOH HOH . G 4 HOH A 53 553 607 HOH HOH . G 4 HOH A 54 554 609 HOH HOH . G 4 HOH A 55 555 614 HOH HOH . G 4 HOH A 56 556 615 HOH HOH . G 4 HOH A 57 557 616 HOH HOH . G 4 HOH A 58 558 617 HOH HOH . G 4 HOH A 59 559 618 HOH HOH . G 4 HOH A 60 560 620 HOH HOH . G 4 HOH A 61 561 621 HOH HOH . G 4 HOH A 62 562 622 HOH HOH . G 4 HOH A 63 563 624 HOH HOH . G 4 HOH A 64 564 629 HOH HOH . G 4 HOH A 65 565 1 HOH HOH . G 4 HOH A 66 566 2 HOH HOH . G 4 HOH A 67 567 3 HOH HOH . G 4 HOH A 68 568 4 HOH HOH . G 4 HOH A 69 569 11 HOH HOH . G 4 HOH A 70 570 49 HOH HOH . G 4 HOH A 71 571 56 HOH HOH . G 4 HOH A 72 572 58 HOH HOH . G 4 HOH A 73 573 59 HOH HOH . G 4 HOH A 74 574 68 HOH HOH . G 4 HOH A 75 575 69 HOH HOH . H 4 HOH B 1 201 510 HOH HOH . H 4 HOH B 2 202 514 HOH HOH . H 4 HOH B 3 203 519 HOH HOH . H 4 HOH B 4 204 520 HOH HOH . H 4 HOH B 5 205 522 HOH HOH . H 4 HOH B 6 206 30 HOH HOH . H 4 HOH B 7 207 34 HOH HOH . H 4 HOH B 8 208 35 HOH HOH . H 4 HOH B 9 209 47 HOH HOH . H 4 HOH B 10 210 76 HOH HOH . H 4 HOH B 11 211 130 HOH HOH . H 4 HOH B 12 212 132 HOH HOH . H 4 HOH B 13 213 135 HOH HOH . H 4 HOH B 14 214 137 HOH HOH . H 4 HOH B 15 215 141 HOH HOH . H 4 HOH B 16 216 145 HOH HOH . H 4 HOH B 17 217 146 HOH HOH . H 4 HOH B 18 218 148 HOH HOH . H 4 HOH B 19 219 152 HOH HOH . H 4 HOH B 20 220 155 HOH HOH . H 4 HOH B 21 221 159 HOH HOH . H 4 HOH B 22 222 171 HOH HOH . H 4 HOH B 23 223 177 HOH HOH . H 4 HOH B 24 224 180 HOH HOH . H 4 HOH B 25 225 182 HOH HOH . H 4 HOH B 26 226 199 HOH HOH . H 4 HOH B 27 227 214 HOH HOH . H 4 HOH B 28 228 528 HOH HOH . H 4 HOH B 29 229 534 HOH HOH . H 4 HOH B 30 230 536 HOH HOH . H 4 HOH B 31 231 539 HOH HOH . H 4 HOH B 32 232 545 HOH HOH . H 4 HOH B 33 233 552 HOH HOH . H 4 HOH B 34 234 553 HOH HOH . H 4 HOH B 35 235 561 HOH HOH . H 4 HOH B 36 236 562 HOH HOH . H 4 HOH B 37 237 563 HOH HOH . H 4 HOH B 38 238 573 HOH HOH . H 4 HOH B 39 239 577 HOH HOH . H 4 HOH B 40 240 578 HOH HOH . H 4 HOH B 41 241 579 HOH HOH . H 4 HOH B 42 242 581 HOH HOH . H 4 HOH B 43 243 586 HOH HOH . H 4 HOH B 44 244 587 HOH HOH . H 4 HOH B 45 245 588 HOH HOH . H 4 HOH B 46 246 600 HOH HOH . H 4 HOH B 47 247 601 HOH HOH . H 4 HOH B 48 248 605 HOH HOH . H 4 HOH B 49 249 619 HOH HOH . H 4 HOH B 50 250 623 HOH HOH . H 4 HOH B 51 251 625 HOH HOH . H 4 HOH B 52 252 626 HOH HOH . H 4 HOH B 53 253 628 HOH HOH . H 4 HOH B 54 254 5 HOH HOH . H 4 HOH B 55 255 6 HOH HOH . H 4 HOH B 56 256 12 HOH HOH . H 4 HOH B 57 257 13 HOH HOH . H 4 HOH B 58 258 15 HOH HOH . H 4 HOH B 59 259 28 HOH HOH . H 4 HOH B 60 260 54 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol SR _atom_site.label_atom_id SR _atom_site.label_comp_id SR _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x -15.916 _atom_site.Cartn_y 2.497 _atom_site.Cartn_z 17.352 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id SR _atom_site.auth_comp_id SR _atom_site.auth_seq_id 103 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #