data_4IJ2 # _model_server_result.job_id iyzNrMVlLjSdKMtMFUu-GQ _model_server_result.datetime_utc '2024-11-11 03:36:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ij2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":201}' # _entry.id 4IJ2 # _exptl.entry_id 4IJ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IJ2 _cell.length_a 132.903 _cell.length_b 185.297 _cell.length_c 103.205 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IJ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 I FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc2 B NE2 HIS 92 B HIS 92 1_555 J FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc3 C NE2 HIS 87 C HIS 87 1_555 K FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc4 D NE2 HIS 92 D HIS 92 1_555 L FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 4IJ2 _atom_sites.fract_transf_matrix[1][1] 0.007524 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005397 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 4 HEM A 1 201 142 HEM HEM . J 4 HEM B 1 201 147 HEM HEM . K 4 HEM C 1 201 142 HEM HEM . L 4 HEM D 1 201 147 HEM HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . K 4 -23.138 17.227 -4.573 1 36.13 ? CHA HEM 201 C 1 HETATM 2 C CHB HEM . . . K 4 -22.813 19.319 -8.954 1 19.24 ? CHB HEM 201 C 1 HETATM 3 C CHC HEM . . . K 4 -27.372 20.951 -8.522 1 8.32 ? CHC HEM 201 C 1 HETATM 4 C CHD HEM . . . K 4 -27.685 18.977 -4.086 1 21.36 ? CHD HEM 201 C 1 HETATM 5 C C1A HEM . . . K 4 -22.644 17.636 -5.795 1 29.9 ? C1A HEM 201 C 1 HETATM 6 C C2A HEM . . . K 4 -21.314 17.366 -6.312 1 33.84 ? C2A HEM 201 C 1 HETATM 7 C C3A HEM . . . K 4 -21.215 17.954 -7.519 1 32.92 ? C3A HEM 201 C 1 HETATM 8 C C4A HEM . . . K 4 -22.477 18.627 -7.8 1 26.47 ? C4A HEM 201 C 1 HETATM 9 C CMA HEM . . . K 4 -19.983 17.922 -8.462 1 36.27 ? CMA HEM 201 C 1 HETATM 10 C CAA HEM . . . K 4 -20.218 16.558 -5.564 1 43.7 ? CAA HEM 201 C 1 HETATM 11 C CBA HEM . . . K 4 -19.525 17.486 -4.566 1 55 ? CBA HEM 201 C 1 HETATM 12 C CGA HEM . . . K 4 -18.512 16.791 -3.686 1 74.86 ? CGA HEM 201 C 1 HETATM 13 O O1A HEM . . . K 4 -18.405 17.189 -2.497 1 82.81 ? O1A HEM 201 C 1 HETATM 14 O O2A HEM . . . K 4 -17.796 15.864 -4.152 1 84.1 ? O2A HEM 201 C 1 HETATM 15 C C1B HEM . . . K 4 -24.013 19.948 -9.242 1 12.8 ? C1B HEM 201 C 1 HETATM 16 C C2B HEM . . . K 4 -24.369 20.634 -10.477 1 8.55 ? C2B HEM 201 C 1 HETATM 17 C C3B HEM . . . K 4 -25.625 21.1 -10.352 1 7.01 ? C3B HEM 201 C 1 HETATM 18 C C4B HEM . . . K 4 -26.122 20.681 -9.05 1 8.45 ? C4B HEM 201 C 1 HETATM 19 C CMB HEM . . . K 4 -23.436 20.823 -11.699 1 8.58 ? CMB HEM 201 C 1 HETATM 20 C CAB HEM . . . K 4 -26.45 21.881 -11.415 1 5.17 ? CAB HEM 201 C 1 HETATM 21 C CBB HEM . . . K 4 -26.149 23.133 -11.784 1 3.53 ? CBB HEM 201 C 1 HETATM 22 C C1C HEM . . . K 4 -27.861 20.575 -7.282 1 10.32 ? C1C HEM 201 C 1 HETATM 23 C C2C HEM . . . K 4 -29.173 20.886 -6.736 1 10.96 ? C2C HEM 201 C 1 HETATM 24 C C3C HEM . . . K 4 -29.254 20.341 -5.512 1 14.48 ? C3C HEM 201 C 1 HETATM 25 C C4C HEM . . . K 4 -27.993 19.68 -5.231 1 16.95 ? C4C HEM 201 C 1 HETATM 26 C CMC HEM . . . K 4 -30.276 21.695 -7.458 1 9.74 ? CMC HEM 201 C 1 HETATM 27 C CAC HEM . . . K 4 -30.456 20.408 -4.538 1 18.87 ? CAC HEM 201 C 1 HETATM 28 C CBC HEM . . . K 4 -30.65 21.493 -3.782 1 20.03 ? CBC HEM 201 C 1 HETATM 29 C C1D HEM . . . K 4 -26.506 18.327 -3.779 1 27.86 ? C1D HEM 201 C 1 HETATM 30 C C2D HEM . . . K 4 -26.243 17.583 -2.562 1 38.23 ? C2D HEM 201 C 1 HETATM 31 C C3D HEM . . . K 4 -24.811 17.038 -2.712 1 43.07 ? C3D HEM 201 C 1 HETATM 32 C C4D HEM . . . K 4 -24.374 17.485 -4.02 1 33.66 ? C4D HEM 201 C 1 HETATM 33 C CMD HEM . . . K 4 -27.189 17.401 -1.352 1 43.87 ? CMD HEM 201 C 1 HETATM 34 C CAD HEM . . . K 4 -24.01 16.177 -1.699 1 53.39 ? CAD HEM 201 C 1 HETATM 35 C CBD HEM . . . K 4 -23.436 17.057 -0.59 1 56.4 ? CBD HEM 201 C 1 HETATM 36 C CGD HEM . . . K 4 -21.94 16.89 -0.456 1 74.95 ? CGD HEM 201 C 1 HETATM 37 O O1D HEM . . . K 4 -21.188 17.788 -0.917 1 79.96 ? O1D HEM 201 C 1 HETATM 38 O O2D HEM . . . K 4 -21.493 15.867 0.127 1 88.5 ? O2D HEM 201 C 1 HETATM 39 N NA HEM . . . K 4 -23.317 18.407 -6.723 1 26.89 ? NA HEM 201 C 1 HETATM 40 N NB HEM . . . K 4 -25.115 19.982 -8.407 1 11.48 ? NB HEM 201 C 1 HETATM 41 N NC HEM . . . K 4 -27.168 19.85 -6.327 1 13.58 ? NC HEM 201 C 1 HETATM 42 N ND HEM . . . K 4 -25.389 18.236 -4.605 1 26.87 ? ND HEM 201 C 1 HETATM 43 FE FE HEM . . . K 4 -25.228 19.108 -6.48 1 19.38 ? FE HEM 201 C 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #