data_4IJX # _model_server_result.job_id T_PjVokuQ68aHtV0NiVCBw _model_server_result.datetime_utc '2024-11-22 19:26:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ijx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 4IJX # _exptl.entry_id 4IJX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 173.943 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DIPHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IJX _cell.length_a 72.369 _cell.length_b 72.369 _cell.length_c 133.379 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IJX _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 A,C,D,E,H 3 1 B,F,G,I 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_455 y-1,x,-z 0 1 0 1 0 0 0 0 -1 -72.369 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O7 P2 -4' _chem_comp.formula_weight 173.943 _chem_comp.id DPO _chem_comp.mon_nstd_flag . _chem_comp.name DIPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 DPO doub 83 n n P1 O2 DPO sing 84 n n P1 O3 DPO sing 85 n n P1 O4 DPO sing 86 n n O4 P2 DPO sing 87 n n P2 O5 DPO doub 88 n n P2 O6 DPO sing 89 n n P2 O7 DPO sing 90 n n # _atom_sites.entry_id 4IJX _atom_sites.fract_transf_matrix[1][1] 0.013818 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 201 1 MG MG . D 3 DPO A 1 202 1 DPO DPO . E 4 GOL A 1 203 1 GOL GOL . F 5 PO4 B 1 201 1 PO4 PO4 . G 5 PO4 B 1 202 2 PO4 PO4 . H 6 HOH A 1 301 1 HOH HOH . H 6 HOH A 2 302 2 HOH HOH . H 6 HOH A 3 303 3 HOH HOH . H 6 HOH A 4 304 4 HOH HOH . H 6 HOH A 5 305 5 HOH HOH . H 6 HOH A 6 306 7 HOH HOH . H 6 HOH A 7 307 10 HOH HOH . H 6 HOH A 8 308 11 HOH HOH . H 6 HOH A 9 309 12 HOH HOH . H 6 HOH A 10 310 15 HOH HOH . H 6 HOH A 11 311 16 HOH HOH . H 6 HOH A 12 312 19 HOH HOH . H 6 HOH A 13 313 24 HOH HOH . H 6 HOH A 14 314 28 HOH HOH . H 6 HOH A 15 315 29 HOH HOH . H 6 HOH A 16 316 30 HOH HOH . H 6 HOH A 17 317 35 HOH HOH . H 6 HOH A 18 318 38 HOH HOH . H 6 HOH A 19 319 39 HOH HOH . H 6 HOH A 20 320 40 HOH HOH . H 6 HOH A 21 321 41 HOH HOH . H 6 HOH A 22 322 47 HOH HOH . H 6 HOH A 23 323 50 HOH HOH . H 6 HOH A 24 324 51 HOH HOH . H 6 HOH A 25 325 54 HOH HOH . H 6 HOH A 26 326 56 HOH HOH . H 6 HOH A 27 327 57 HOH HOH . H 6 HOH A 28 328 59 HOH HOH . H 6 HOH A 29 329 60 HOH HOH . H 6 HOH A 30 330 61 HOH HOH . H 6 HOH A 31 331 62 HOH HOH . H 6 HOH A 32 332 65 HOH HOH . H 6 HOH A 33 333 66 HOH HOH . H 6 HOH A 34 334 67 HOH HOH . H 6 HOH A 35 335 73 HOH HOH . H 6 HOH A 36 336 79 HOH HOH . H 6 HOH A 37 337 81 HOH HOH . H 6 HOH A 38 338 83 HOH HOH . H 6 HOH A 39 339 84 HOH HOH . H 6 HOH A 40 340 85 HOH HOH . H 6 HOH A 41 341 88 HOH HOH . H 6 HOH A 42 342 89 HOH HOH . H 6 HOH A 43 343 90 HOH HOH . H 6 HOH A 44 344 94 HOH HOH . H 6 HOH A 45 345 96 HOH HOH . H 6 HOH A 46 346 99 HOH HOH . H 6 HOH A 47 347 100 HOH HOH . H 6 HOH A 48 348 101 HOH HOH . H 6 HOH A 49 349 102 HOH HOH . H 6 HOH A 50 350 107 HOH HOH . H 6 HOH A 51 351 113 HOH HOH . H 6 HOH A 52 352 114 HOH HOH . H 6 HOH A 53 353 125 HOH HOH . H 6 HOH A 54 354 127 HOH HOH . H 6 HOH A 55 355 128 HOH HOH . H 6 HOH A 56 356 131 HOH HOH . H 6 HOH A 57 357 133 HOH HOH . H 6 HOH A 58 358 135 HOH HOH . H 6 HOH A 59 359 136 HOH HOH . H 6 HOH A 60 360 137 HOH HOH . H 6 HOH A 61 361 138 HOH HOH . H 6 HOH A 62 362 139 HOH HOH . H 6 HOH A 63 363 141 HOH HOH . H 6 HOH A 64 364 142 HOH HOH . H 6 HOH A 65 365 143 HOH HOH . H 6 HOH A 66 366 144 HOH HOH . I 6 HOH B 1 301 6 HOH HOH . I 6 HOH B 2 302 13 HOH HOH . I 6 HOH B 3 303 14 HOH HOH . I 6 HOH B 4 304 17 HOH HOH . I 6 HOH B 5 305 18 HOH HOH . I 6 HOH B 6 306 20 HOH HOH . I 6 HOH B 7 307 21 HOH HOH . I 6 HOH B 8 308 22 HOH HOH . I 6 HOH B 9 309 25 HOH HOH . I 6 HOH B 10 310 26 HOH HOH . I 6 HOH B 11 311 31 HOH HOH . I 6 HOH B 12 312 32 HOH HOH . I 6 HOH B 13 313 33 HOH HOH . I 6 HOH B 14 314 34 HOH HOH . I 6 HOH B 15 315 36 HOH HOH . I 6 HOH B 16 316 42 HOH HOH . I 6 HOH B 17 317 43 HOH HOH . I 6 HOH B 18 318 46 HOH HOH . I 6 HOH B 19 319 53 HOH HOH . I 6 HOH B 20 320 55 HOH HOH . I 6 HOH B 21 321 64 HOH HOH . I 6 HOH B 22 322 68 HOH HOH . I 6 HOH B 23 323 69 HOH HOH . I 6 HOH B 24 324 70 HOH HOH . I 6 HOH B 25 325 71 HOH HOH . I 6 HOH B 26 326 72 HOH HOH . I 6 HOH B 27 327 75 HOH HOH . I 6 HOH B 28 328 76 HOH HOH . I 6 HOH B 29 329 77 HOH HOH . I 6 HOH B 30 330 78 HOH HOH . I 6 HOH B 31 331 92 HOH HOH . I 6 HOH B 32 332 93 HOH HOH . I 6 HOH B 33 333 95 HOH HOH . I 6 HOH B 34 334 97 HOH HOH . I 6 HOH B 35 335 103 HOH HOH . I 6 HOH B 36 336 105 HOH HOH . I 6 HOH B 37 337 108 HOH HOH . I 6 HOH B 38 338 110 HOH HOH . I 6 HOH B 39 339 112 HOH HOH . I 6 HOH B 40 340 115 HOH HOH . I 6 HOH B 41 341 117 HOH HOH . I 6 HOH B 42 342 118 HOH HOH . I 6 HOH B 43 343 120 HOH HOH . I 6 HOH B 44 344 123 HOH HOH . I 6 HOH B 45 345 129 HOH HOH . I 6 HOH B 46 346 130 HOH HOH . I 6 HOH B 47 347 132 HOH HOH . I 6 HOH B 48 348 134 HOH HOH . I 6 HOH B 49 349 140 HOH HOH . I 6 HOH B 50 350 145 HOH HOH . I 6 HOH B 51 351 146 HOH HOH . I 6 HOH B 52 352 147 HOH HOH . I 6 HOH B 53 353 148 HOH HOH . I 6 HOH B 54 354 149 HOH HOH . I 6 HOH B 55 355 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 DPO . . . D 3 -19.159 40.8 10.943 1 99.44 ? P1 DPO 202 A 1 HETATM 2 O O1 DPO . . . D 3 -19.031 39.414 10.447 1 96.15 ? O1 DPO 202 A 1 HETATM 3 O O2 DPO . . . D 3 -18.043 41.758 10.715 1 95.03 ? O2 DPO 202 A 1 HETATM 4 O O3 DPO . . . D 3 -20.512 41.37 11.097 1 106.54 ? O3 DPO 202 A 1 HETATM 5 O O4 DPO . . . D 3 -18.839 40.498 12.549 1 104.42 ? O4 DPO 202 A 1 HETATM 6 P P2 DPO . . . D 3 -19.749 39.686 13.675 1 109.16 ? P2 DPO 202 A 1 HETATM 7 O O5 DPO . . . D 3 -20.958 39.164 12.968 1 104.46 ? O5 DPO 202 A 1 HETATM 8 O O6 DPO . . . D 3 -18.833 38.625 14.189 1 102.77 ? O6 DPO 202 A 1 HETATM 9 O O7 DPO . . . D 3 -20.007 40.792 14.652 1 101.14 ? O7 DPO 202 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #