data_4IJY # _model_server_result.job_id jyuHkvCPAN3vGgZSebngSg _model_server_result.datetime_utc '2025-02-28 12:39:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ijy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 4IJY # _exptl.entry_id 4IJY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IJY _cell.length_a 143.489 _cell.length_b 143.489 _cell.length_c 59.29 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IJY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -39.526667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 26 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 26 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 323 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 323 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.036 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4IJY _atom_sites.fract_transf_matrix[1][1] 0.006969 _atom_sites.fract_transf_matrix[1][2] 0.004024 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016866 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD A 1 401 1 IOD IOD . C 2 IOD A 1 402 2 IOD IOD . D 2 IOD A 1 403 3 IOD IOD . E 2 IOD A 1 404 4 IOD IOD . F 2 IOD A 1 405 5 IOD IOD . G 2 IOD A 1 406 6 IOD IOD . H 2 IOD A 1 407 7 IOD IOD . I 2 IOD A 1 408 8 IOD IOD . J 3 GOL A 1 409 1 GOL GOL . K 3 GOL A 1 410 2 GOL GOL . L 3 GOL A 1 411 3 GOL GOL . M 3 GOL A 1 412 4 GOL GOL . N 4 HOH A 1 501 1 HOH HOH . N 4 HOH A 2 502 2 HOH HOH . N 4 HOH A 3 503 3 HOH HOH . N 4 HOH A 4 504 4 HOH HOH . N 4 HOH A 5 505 5 HOH HOH . N 4 HOH A 6 506 6 HOH HOH . N 4 HOH A 7 507 7 HOH HOH . N 4 HOH A 8 508 8 HOH HOH . N 4 HOH A 9 509 9 HOH HOH . N 4 HOH A 10 510 10 HOH HOH . N 4 HOH A 11 511 11 HOH HOH . N 4 HOH A 12 512 12 HOH HOH . N 4 HOH A 13 513 13 HOH HOH . N 4 HOH A 14 514 14 HOH HOH . N 4 HOH A 15 515 15 HOH HOH . N 4 HOH A 16 516 16 HOH HOH . N 4 HOH A 17 517 17 HOH HOH . N 4 HOH A 18 518 18 HOH HOH . N 4 HOH A 19 519 19 HOH HOH . N 4 HOH A 20 520 20 HOH HOH . N 4 HOH A 21 521 21 HOH HOH . N 4 HOH A 22 522 22 HOH HOH . N 4 HOH A 23 523 23 HOH HOH . N 4 HOH A 24 524 24 HOH HOH . N 4 HOH A 25 525 25 HOH HOH . N 4 HOH A 26 526 26 HOH HOH . N 4 HOH A 27 527 27 HOH HOH . N 4 HOH A 28 528 28 HOH HOH . N 4 HOH A 29 529 29 HOH HOH . N 4 HOH A 30 530 30 HOH HOH . N 4 HOH A 31 531 31 HOH HOH . N 4 HOH A 32 532 32 HOH HOH . N 4 HOH A 33 533 33 HOH HOH . N 4 HOH A 34 534 34 HOH HOH . N 4 HOH A 35 535 35 HOH HOH . N 4 HOH A 36 536 37 HOH HOH . N 4 HOH A 37 537 38 HOH HOH . N 4 HOH A 38 538 39 HOH HOH . N 4 HOH A 39 539 41 HOH HOH . N 4 HOH A 40 540 42 HOH HOH . N 4 HOH A 41 541 43 HOH HOH . N 4 HOH A 42 542 44 HOH HOH . N 4 HOH A 43 543 45 HOH HOH . N 4 HOH A 44 544 46 HOH HOH . N 4 HOH A 45 545 47 HOH HOH . N 4 HOH A 46 546 48 HOH HOH . N 4 HOH A 47 547 49 HOH HOH . N 4 HOH A 48 548 50 HOH HOH . N 4 HOH A 49 549 51 HOH HOH . N 4 HOH A 50 550 52 HOH HOH . N 4 HOH A 51 551 53 HOH HOH . N 4 HOH A 52 552 54 HOH HOH . N 4 HOH A 53 553 55 HOH HOH . N 4 HOH A 54 554 57 HOH HOH . N 4 HOH A 55 555 58 HOH HOH . N 4 HOH A 56 556 59 HOH HOH . N 4 HOH A 57 557 60 HOH HOH . N 4 HOH A 58 558 61 HOH HOH . N 4 HOH A 59 559 62 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x 58.657 _atom_site.Cartn_y -70.127 _atom_site.Cartn_z -29.406 _atom_site.occupancy 0.3 _atom_site.B_iso_or_equiv 46.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 407 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #