data_4IKD # _model_server_result.job_id 729AinnI90_L552nPrEABQ _model_server_result.datetime_utc '2024-11-09 23:19:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ikd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 4IKD # _exptl.entry_id 4IKD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4IKD _cell.length_a 40.12 _cell.length_b 62.4 _cell.length_c 66.06 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IKD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 32 A TYR 38 1_555 A N MLY 33 A MLY 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MLY 33 A MLY 39 1_555 A N ILE 34 A ILE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale3 A C SER 40 A SER 46 1_555 A N MLY 41 A MLY 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale4 A C MLY 41 A MLY 47 1_555 A N ALA 42 A ALA 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 A C ALA 45 A ALA 51 1_555 A N MLY 46 A MLY 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale6 A C MLY 46 A MLY 52 1_555 A N THR 47 A THR 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale7 A C ARG 61 A ARG 67 1_555 A N MLY 62 A MLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C MLY 62 A MLY 68 1_555 A N GLN 63 A GLN 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 A C GLU 91 A GLU 97 1_555 A N MLY 92 A MLY 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale10 A C MLY 92 A MLY 98 1_555 A N ARG 93 A ARG 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 A C GLU 102 A GLU 108 1_555 A N MLY 103 A MLY 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale12 A C MLY 103 A MLY 109 1_555 A N VAL 104 A VAL 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 E NA NA . A NA 204 1_555 I O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc2 G NA NA . A NA 206 1_555 I O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc3 F NA NA . A NA 205 1_555 I O HOH . A HOH 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc4 H NA NA . A NA 207 1_555 I O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4IKD _atom_sites.fract_transf_matrix[1][1] 0.024925 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016026 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 201 1 CL CL . C 2 CL A 1 202 2 CL CL . D 2 CL A 1 203 3 CL CL . E 3 NA A 1 204 4 NA NA . F 3 NA A 1 205 5 NA NA . G 3 NA A 1 206 6 NA NA . H 3 NA A 1 207 7 NA NA . I 4 HOH A 1 301 1 HOH HOH . I 4 HOH A 2 302 2 HOH HOH . I 4 HOH A 3 303 5 HOH HOH . I 4 HOH A 4 304 6 HOH HOH . I 4 HOH A 5 305 7 HOH HOH . I 4 HOH A 6 306 8 HOH HOH . I 4 HOH A 7 307 9 HOH HOH . I 4 HOH A 8 308 10 HOH HOH . I 4 HOH A 9 309 11 HOH HOH . I 4 HOH A 10 310 12 HOH HOH . I 4 HOH A 11 311 13 HOH HOH . I 4 HOH A 12 312 14 HOH HOH . I 4 HOH A 13 313 15 HOH HOH . I 4 HOH A 14 314 16 HOH HOH . I 4 HOH A 15 315 17 HOH HOH . I 4 HOH A 16 316 18 HOH HOH . I 4 HOH A 17 317 19 HOH HOH . I 4 HOH A 18 318 20 HOH HOH . I 4 HOH A 19 319 21 HOH HOH . I 4 HOH A 20 320 22 HOH HOH . I 4 HOH A 21 321 23 HOH HOH . I 4 HOH A 22 322 24 HOH HOH . I 4 HOH A 23 323 25 HOH HOH . I 4 HOH A 24 324 27 HOH HOH . I 4 HOH A 25 325 28 HOH HOH . I 4 HOH A 26 326 29 HOH HOH . I 4 HOH A 27 327 30 HOH HOH . I 4 HOH A 28 328 31 HOH HOH . I 4 HOH A 29 329 32 HOH HOH . I 4 HOH A 30 330 33 HOH HOH . I 4 HOH A 31 331 34 HOH HOH . I 4 HOH A 32 332 35 HOH HOH . I 4 HOH A 33 333 37 HOH HOH . I 4 HOH A 34 334 38 HOH HOH . I 4 HOH A 35 335 39 HOH HOH . I 4 HOH A 36 336 40 HOH HOH . I 4 HOH A 37 337 41 HOH HOH . I 4 HOH A 38 338 42 HOH HOH . I 4 HOH A 39 339 43 HOH HOH . I 4 HOH A 40 340 44 HOH HOH . I 4 HOH A 41 341 45 HOH HOH . I 4 HOH A 42 342 46 HOH HOH . I 4 HOH A 43 343 47 HOH HOH . I 4 HOH A 44 344 49 HOH HOH . I 4 HOH A 45 345 50 HOH HOH . I 4 HOH A 46 346 51 HOH HOH . I 4 HOH A 47 347 52 HOH HOH . I 4 HOH A 48 348 53 HOH HOH . I 4 HOH A 49 349 54 HOH HOH . I 4 HOH A 50 350 55 HOH HOH . I 4 HOH A 51 351 56 HOH HOH . I 4 HOH A 52 352 58 HOH HOH . I 4 HOH A 53 353 59 HOH HOH . I 4 HOH A 54 354 60 HOH HOH . I 4 HOH A 55 355 62 HOH HOH . I 4 HOH A 56 356 64 HOH HOH . I 4 HOH A 57 357 65 HOH HOH . I 4 HOH A 58 358 66 HOH HOH . I 4 HOH A 59 359 67 HOH HOH . I 4 HOH A 60 360 68 HOH HOH . I 4 HOH A 61 361 69 HOH HOH . I 4 HOH A 62 362 70 HOH HOH . I 4 HOH A 63 363 71 HOH HOH . I 4 HOH A 64 364 72 HOH HOH . I 4 HOH A 65 365 73 HOH HOH . I 4 HOH A 66 366 74 HOH HOH . I 4 HOH A 67 367 75 HOH HOH . I 4 HOH A 68 368 76 HOH HOH . I 4 HOH A 69 369 77 HOH HOH . I 4 HOH A 70 370 78 HOH HOH . I 4 HOH A 71 371 80 HOH HOH . I 4 HOH A 72 372 81 HOH HOH . I 4 HOH A 73 373 82 HOH HOH . I 4 HOH A 74 374 83 HOH HOH . I 4 HOH A 75 375 84 HOH HOH . I 4 HOH A 76 376 85 HOH HOH . I 4 HOH A 77 377 86 HOH HOH . I 4 HOH A 78 378 87 HOH HOH . I 4 HOH A 79 379 89 HOH HOH . I 4 HOH A 80 380 90 HOH HOH . I 4 HOH A 81 381 91 HOH HOH . I 4 HOH A 82 382 92 HOH HOH . I 4 HOH A 83 383 93 HOH HOH . I 4 HOH A 84 384 94 HOH HOH . I 4 HOH A 85 385 95 HOH HOH . I 4 HOH A 86 386 96 HOH HOH . I 4 HOH A 87 387 97 HOH HOH . I 4 HOH A 88 388 98 HOH HOH . I 4 HOH A 89 389 99 HOH HOH . I 4 HOH A 90 390 100 HOH HOH . I 4 HOH A 91 391 101 HOH HOH . I 4 HOH A 92 392 102 HOH HOH . I 4 HOH A 93 393 103 HOH HOH . I 4 HOH A 94 394 104 HOH HOH . I 4 HOH A 95 395 105 HOH HOH . I 4 HOH A 96 396 106 HOH HOH . I 4 HOH A 97 397 107 HOH HOH . I 4 HOH A 98 398 108 HOH HOH . I 4 HOH A 99 399 109 HOH HOH . I 4 HOH A 100 400 110 HOH HOH . I 4 HOH A 101 401 111 HOH HOH . I 4 HOH A 102 402 113 HOH HOH . I 4 HOH A 103 403 115 HOH HOH . I 4 HOH A 104 404 116 HOH HOH . I 4 HOH A 105 405 118 HOH HOH . I 4 HOH A 106 406 119 HOH HOH . I 4 HOH A 107 407 120 HOH HOH . I 4 HOH A 108 408 122 HOH HOH . I 4 HOH A 109 409 124 HOH HOH . I 4 HOH A 110 410 125 HOH HOH . I 4 HOH A 111 411 126 HOH HOH . I 4 HOH A 112 412 128 HOH HOH . I 4 HOH A 113 413 129 HOH HOH . I 4 HOH A 114 414 130 HOH HOH . I 4 HOH A 115 415 131 HOH HOH . I 4 HOH A 116 416 132 HOH HOH . I 4 HOH A 117 417 134 HOH HOH . I 4 HOH A 118 418 135 HOH HOH . I 4 HOH A 119 419 137 HOH HOH . I 4 HOH A 120 420 140 HOH HOH . I 4 HOH A 121 421 141 HOH HOH . I 4 HOH A 122 422 143 HOH HOH . I 4 HOH A 123 423 144 HOH HOH . I 4 HOH A 124 424 145 HOH HOH . I 4 HOH A 125 425 146 HOH HOH . I 4 HOH A 126 426 147 HOH HOH . I 4 HOH A 127 427 148 HOH HOH . I 4 HOH A 128 428 151 HOH HOH . I 4 HOH A 129 429 152 HOH HOH . I 4 HOH A 130 430 153 HOH HOH . I 4 HOH A 131 431 154 HOH HOH . I 4 HOH A 132 432 155 HOH HOH . I 4 HOH A 133 433 156 HOH HOH . I 4 HOH A 134 434 157 HOH HOH . I 4 HOH A 135 435 158 HOH HOH . I 4 HOH A 136 436 159 HOH HOH . I 4 HOH A 137 437 160 HOH HOH . I 4 HOH A 138 438 161 HOH HOH . I 4 HOH A 139 439 162 HOH HOH . I 4 HOH A 140 440 163 HOH HOH . I 4 HOH A 141 441 164 HOH HOH . I 4 HOH A 142 442 165 HOH HOH . I 4 HOH A 143 443 166 HOH HOH . I 4 HOH A 144 444 168 HOH HOH . I 4 HOH A 145 445 169 HOH HOH . I 4 HOH A 146 446 170 HOH HOH . I 4 HOH A 147 447 171 HOH HOH . I 4 HOH A 148 448 172 HOH HOH . I 4 HOH A 149 449 173 HOH HOH . I 4 HOH A 150 450 175 HOH HOH . I 4 HOH A 151 451 179 HOH HOH . I 4 HOH A 152 452 180 HOH HOH . I 4 HOH A 153 453 181 HOH HOH . I 4 HOH A 154 454 182 HOH HOH . I 4 HOH A 155 455 183 HOH HOH . I 4 HOH A 156 456 184 HOH HOH . I 4 HOH A 157 457 185 HOH HOH . I 4 HOH A 158 458 186 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -3.585 _atom_site.Cartn_y -24.453 _atom_site.Cartn_z 1.363 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #