data_4IKH # _model_server_result.job_id h4BxACk-SWp6ZapCftXZpg _model_server_result.datetime_utc '2024-11-01 05:29:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ikh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4IKH # _exptl.entry_id 4IKH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 307.323 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLUTATHIONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IKH _cell.length_a 88.189 _cell.length_b 88.189 _cell.length_c 159.834 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IKH _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -44.0945 76.373914 26.639 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 38 A ILE 36 1_555 A N MSE 39 A MSE 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 39 A MSE 37 1_555 A N LEU 40 A LEU 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C GLN 59 A GLN 57 1_555 A N MSE 60 A MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C MSE 60 A MSE 58 1_555 A N THR 61 A THR 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C LEU 121 A LEU 119 1_555 A N MSE 122 A MSE 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 122 A MSE 120 1_555 A N PHE 123 A PHE 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C GLN 124 A GLN 122 1_555 A N MSE 125 A MSE 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 A C MSE 125 A MSE 123 1_555 A N GLY 126 A GLY 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 A C PRO 130 A PRO 128 1_555 A N MSE 131 A MSE 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 A C MSE 131 A MSE 129 1_555 A N PHE 132 A PHE 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 A C ILE 176 A ILE 174 1_555 A N MSE 177 A MSE 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 A C MSE 177 A MSE 175 1_555 A N GLY 178 A GLY 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C10 H17 N3 O6 S' _chem_comp.formula_weight 307.323 _chem_comp.id GSH _chem_comp.mon_nstd_flag . _chem_comp.name GLUTATHIONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4IKH _atom_sites.fract_transf_matrix[1][1] 0.011339 _atom_sites.fract_transf_matrix[1][2] 0.006547 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013093 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006256 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GSH A 1 301 1 GSH GSH . C 3 CL A 1 302 1 CL CL . D 2 GSH A 1 303 1 GSH GSH . E 4 HOH A 1 401 1 HOH HOH . E 4 HOH A 2 402 2 HOH HOH . E 4 HOH A 3 403 3 HOH HOH . E 4 HOH A 4 404 4 HOH HOH . E 4 HOH A 5 405 5 HOH HOH . E 4 HOH A 6 406 6 HOH HOH . E 4 HOH A 7 407 7 HOH HOH . E 4 HOH A 8 408 8 HOH HOH . E 4 HOH A 9 409 9 HOH HOH . E 4 HOH A 10 410 10 HOH HOH . E 4 HOH A 11 411 11 HOH HOH . E 4 HOH A 12 412 14 HOH HOH . E 4 HOH A 13 413 15 HOH HOH . E 4 HOH A 14 414 16 HOH HOH . E 4 HOH A 15 415 17 HOH HOH . E 4 HOH A 16 416 20 HOH HOH . E 4 HOH A 17 417 22 HOH HOH . E 4 HOH A 18 418 23 HOH HOH . E 4 HOH A 19 419 24 HOH HOH . E 4 HOH A 20 420 26 HOH HOH . E 4 HOH A 21 421 27 HOH HOH . E 4 HOH A 22 422 28 HOH HOH . E 4 HOH A 23 423 29 HOH HOH . E 4 HOH A 24 424 30 HOH HOH . E 4 HOH A 25 425 31 HOH HOH . E 4 HOH A 26 426 32 HOH HOH . E 4 HOH A 27 427 34 HOH HOH . E 4 HOH A 28 428 35 HOH HOH . E 4 HOH A 29 429 38 HOH HOH . E 4 HOH A 30 430 39 HOH HOH . E 4 HOH A 31 431 41 HOH HOH . E 4 HOH A 32 432 43 HOH HOH . E 4 HOH A 33 433 44 HOH HOH . E 4 HOH A 34 434 45 HOH HOH . E 4 HOH A 35 435 46 HOH HOH . E 4 HOH A 36 436 47 HOH HOH . E 4 HOH A 37 437 48 HOH HOH . E 4 HOH A 38 438 50 HOH HOH . E 4 HOH A 39 439 51 HOH HOH . E 4 HOH A 40 440 52 HOH HOH . E 4 HOH A 41 441 53 HOH HOH . E 4 HOH A 42 442 54 HOH HOH . E 4 HOH A 43 443 55 HOH HOH . E 4 HOH A 44 444 56 HOH HOH . E 4 HOH A 45 445 57 HOH HOH . E 4 HOH A 46 446 59 HOH HOH . E 4 HOH A 47 447 61 HOH HOH . E 4 HOH A 48 448 62 HOH HOH . E 4 HOH A 49 449 64 HOH HOH . E 4 HOH A 50 450 65 HOH HOH . E 4 HOH A 51 451 66 HOH HOH . E 4 HOH A 52 452 69 HOH HOH . E 4 HOH A 53 453 72 HOH HOH . E 4 HOH A 54 454 73 HOH HOH . E 4 HOH A 55 455 77 HOH HOH . E 4 HOH A 56 456 79 HOH HOH . E 4 HOH A 57 457 81 HOH HOH . E 4 HOH A 58 458 83 HOH HOH . E 4 HOH A 59 459 84 HOH HOH . E 4 HOH A 60 460 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GSH . . . B 2 2.696 45.494 13.995 1 21.39 ? N1 GSH 301 A 1 HETATM 2 C CA1 GSH . . . B 2 3.442 44.296 13.83 1 27.61 ? CA1 GSH 301 A 1 HETATM 3 C C1 GSH . . . B 2 4.577 44.51 12.87 1 32.21 ? C1 GSH 301 A 1 HETATM 4 O O11 GSH . . . B 2 4.448 45.338 11.924 1 27.98 ? O11 GSH 301 A 1 HETATM 5 O O12 GSH . . . B 2 5.672 43.867 12.99 1 31.34 ? O12 GSH 301 A 1 HETATM 6 C CB1 GSH . . . B 2 2.555 43.226 13.287 1 33.17 ? CB1 GSH 301 A 1 HETATM 7 C CG1 GSH . . . B 2 3.37 41.935 13.192 1 30.6 ? CG1 GSH 301 A 1 HETATM 8 C CD1 GSH . . . B 2 2.48 40.762 12.859 1 27.52 ? CD1 GSH 301 A 1 HETATM 9 O OE1 GSH . . . B 2 1.277 40.898 12.788 1 31.6 ? OE1 GSH 301 A 1 HETATM 10 N N2 GSH . . . B 2 3.076 39.454 12.608 1 30.29 ? N2 GSH 301 A 1 HETATM 11 C CA2 GSH . . . B 2 2.24 38.34 12.294 1 33.01 ? CA2 GSH 301 A 1 HETATM 12 C C2 GSH . . . B 2 2.528 37.302 13.363 1 34.73 ? C2 GSH 301 A 1 HETATM 13 O O2 GSH . . . B 2 3.685 37.178 13.777 1 35.21 ? O2 GSH 301 A 1 HETATM 14 C CB2 GSH . . . B 2 2.589 37.772 10.952 1 35.54 ? CB2 GSH 301 A 1 HETATM 15 S SG2 GSH . . . B 2 2.402 38.968 9.643 1 41.39 ? SG2 GSH 301 A 1 HETATM 16 N N3 GSH . . . B 2 1.485 36.456 13.911 1 36.35 ? N3 GSH 301 A 1 HETATM 17 C CA3 GSH . . . B 2 1.824 35.473 14.92 1 46.48 ? CA3 GSH 301 A 1 HETATM 18 C C3 GSH . . . B 2 0.775 35.459 15.979 1 47.87 ? C3 GSH 301 A 1 HETATM 19 O O31 GSH . . . B 2 0.012 36.451 16.127 1 48.91 ? O31 GSH 301 A 1 HETATM 20 O O32 GSH . . . B 2 0.662 34.45 16.722 1 46.11 ? O32 GSH 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #