data_4IKR # _model_server_result.job_id 6q_XoImnfmlUai3Z8J0UMQ _model_server_result.datetime_utc '2024-11-04 23:19:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ikr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4IKR # _exptl.entry_id 4IKR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.03 _cell.angle_gamma 90 _cell.entry_id 4IKR _cell.length_a 47.345 _cell.length_b 77.423 _cell.length_c 48.023 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IKR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 141 A SER 205 1_555 F K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc2 A O ASN 143 A ASN 207 1_555 F K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.812 ? metalc ? metalc3 A O VAL 145 A VAL 209 1_555 F K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc4 A NE2 HIS 148 A HIS 212 1_555 D CO CO . A CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc5 A OD1 ASP 165 A ASP 229 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc6 A OD2 ASP 165 A ASP 229 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc7 A OD2 ASP 176 A ASP 240 1_555 B CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc8 A OD1 ASP 176 A ASP 240 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc9 A NE2 HIS 239 A HIS 303 1_555 B CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc10 A OE1 GLU 272 A GLU 336 1_555 B CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc11 A O SER 299 A SER 363 1_555 F K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc12 A OE2 GLU 303 A GLU 367 1_555 B CO CO . A CO 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc13 A OE1 GLU 303 A GLU 367 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc14 B CO CO . A CO 401 1_555 H O HOH . A HOH 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc15 C CO CO . A CO 402 1_555 H O HOH . A HOH 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc16 C CO CO . A CO 402 1_555 H O HOH . A HOH 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc17 D CO CO . A CO 403 1_555 E N23 PVP . A PVP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc18 D CO CO . A CO 403 1_555 E N3 PVP . A PVP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc19 D CO CO . A CO 403 1_555 H O HOH . A HOH 585 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc20 D CO CO . A CO 403 1_555 H O HOH . A HOH 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc21 D CO CO . A CO 403 1_555 H O HOH . A HOH 588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc22 F K K . A K 405 1_555 H O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4IKR _atom_sites.fract_transf_matrix[1][1] 0.021122 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000378 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020827 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 401 401 CO CO . C 2 CO A 1 402 402 CO CO . D 2 CO A 1 403 403 CO CO . E 3 PVP A 1 404 410 PVP PP1 . F 4 K A 1 405 404 K K . G 5 GOL A 1 406 470 GOL GOL . H 6 HOH A 1 501 1 HOH HOH . H 6 HOH A 2 502 2 HOH HOH . H 6 HOH A 3 503 3 HOH HOH . H 6 HOH A 4 504 4 HOH HOH . H 6 HOH A 5 505 5 HOH HOH . H 6 HOH A 6 506 6 HOH HOH . H 6 HOH A 7 507 7 HOH HOH . H 6 HOH A 8 508 8 HOH HOH . H 6 HOH A 9 509 9 HOH HOH . H 6 HOH A 10 510 10 HOH HOH . H 6 HOH A 11 511 11 HOH HOH . H 6 HOH A 12 512 12 HOH HOH . H 6 HOH A 13 513 13 HOH HOH . H 6 HOH A 14 514 14 HOH HOH . H 6 HOH A 15 515 15 HOH HOH . H 6 HOH A 16 516 16 HOH HOH . H 6 HOH A 17 517 17 HOH HOH . H 6 HOH A 18 518 18 HOH HOH . H 6 HOH A 19 519 19 HOH HOH . H 6 HOH A 20 520 20 HOH HOH . H 6 HOH A 21 521 21 HOH HOH . H 6 HOH A 22 522 22 HOH HOH . H 6 HOH A 23 523 23 HOH HOH . H 6 HOH A 24 524 24 HOH HOH . H 6 HOH A 25 525 25 HOH HOH . H 6 HOH A 26 526 26 HOH HOH . H 6 HOH A 27 527 27 HOH HOH . H 6 HOH A 28 528 28 HOH HOH . H 6 HOH A 29 529 29 HOH HOH . H 6 HOH A 30 530 30 HOH HOH . H 6 HOH A 31 531 31 HOH HOH . H 6 HOH A 32 532 32 HOH HOH . H 6 HOH A 33 533 33 HOH HOH . H 6 HOH A 34 534 34 HOH HOH . H 6 HOH A 35 535 35 HOH HOH . H 6 HOH A 36 536 36 HOH HOH . H 6 HOH A 37 537 37 HOH HOH . H 6 HOH A 38 538 38 HOH HOH . H 6 HOH A 39 539 39 HOH HOH . H 6 HOH A 40 540 40 HOH HOH . H 6 HOH A 41 541 41 HOH HOH . H 6 HOH A 42 542 42 HOH HOH . H 6 HOH A 43 543 43 HOH HOH . H 6 HOH A 44 544 44 HOH HOH . H 6 HOH A 45 545 45 HOH HOH . H 6 HOH A 46 546 46 HOH HOH . H 6 HOH A 47 547 47 HOH HOH . H 6 HOH A 48 548 48 HOH HOH . H 6 HOH A 49 549 49 HOH HOH . H 6 HOH A 50 550 50 HOH HOH . H 6 HOH A 51 551 51 HOH HOH . H 6 HOH A 52 552 52 HOH HOH . H 6 HOH A 53 553 53 HOH HOH . H 6 HOH A 54 554 54 HOH HOH . H 6 HOH A 55 555 55 HOH HOH . H 6 HOH A 56 556 56 HOH HOH . H 6 HOH A 57 557 57 HOH HOH . H 6 HOH A 58 558 58 HOH HOH . H 6 HOH A 59 559 59 HOH HOH . H 6 HOH A 60 560 60 HOH HOH . H 6 HOH A 61 561 61 HOH HOH . H 6 HOH A 62 562 62 HOH HOH . H 6 HOH A 63 563 63 HOH HOH . H 6 HOH A 64 564 64 HOH HOH . H 6 HOH A 65 565 65 HOH HOH . H 6 HOH A 66 566 66 HOH HOH . H 6 HOH A 67 567 67 HOH HOH . H 6 HOH A 68 568 68 HOH HOH . H 6 HOH A 69 569 69 HOH HOH . H 6 HOH A 70 570 70 HOH HOH . H 6 HOH A 71 571 71 HOH HOH . H 6 HOH A 72 572 72 HOH HOH . H 6 HOH A 73 573 73 HOH HOH . H 6 HOH A 74 574 74 HOH HOH . H 6 HOH A 75 575 75 HOH HOH . H 6 HOH A 76 576 76 HOH HOH . H 6 HOH A 77 577 77 HOH HOH . H 6 HOH A 78 578 78 HOH HOH . H 6 HOH A 79 579 79 HOH HOH . H 6 HOH A 80 580 80 HOH HOH . H 6 HOH A 81 581 81 HOH HOH . H 6 HOH A 82 582 82 HOH HOH . H 6 HOH A 83 583 83 HOH HOH . H 6 HOH A 84 584 84 HOH HOH . H 6 HOH A 85 585 85 HOH HOH . H 6 HOH A 86 586 86 HOH HOH . H 6 HOH A 87 587 87 HOH HOH . H 6 HOH A 88 588 88 HOH HOH . H 6 HOH A 89 589 89 HOH HOH . H 6 HOH A 90 590 90 HOH HOH . H 6 HOH A 91 591 91 HOH HOH . H 6 HOH A 92 592 92 HOH HOH . H 6 HOH A 93 593 93 HOH HOH . H 6 HOH A 94 594 94 HOH HOH . H 6 HOH A 95 595 95 HOH HOH . H 6 HOH A 96 596 96 HOH HOH . H 6 HOH A 97 597 97 HOH HOH . H 6 HOH A 98 598 98 HOH HOH . H 6 HOH A 99 599 99 HOH HOH . H 6 HOH A 100 600 100 HOH HOH . H 6 HOH A 101 601 101 HOH HOH . H 6 HOH A 102 602 102 HOH HOH . H 6 HOH A 103 603 103 HOH HOH . H 6 HOH A 104 604 104 HOH HOH . H 6 HOH A 105 605 105 HOH HOH . H 6 HOH A 106 606 106 HOH HOH . H 6 HOH A 107 607 107 HOH HOH . H 6 HOH A 108 608 109 HOH HOH . H 6 HOH A 109 609 110 HOH HOH . H 6 HOH A 110 610 112 HOH HOH . H 6 HOH A 111 611 113 HOH HOH . H 6 HOH A 112 612 114 HOH HOH . H 6 HOH A 113 613 115 HOH HOH . H 6 HOH A 114 614 116 HOH HOH . H 6 HOH A 115 615 118 HOH HOH . H 6 HOH A 116 616 119 HOH HOH . H 6 HOH A 117 617 120 HOH HOH . H 6 HOH A 118 618 121 HOH HOH . H 6 HOH A 119 619 122 HOH HOH . H 6 HOH A 120 620 123 HOH HOH . H 6 HOH A 121 621 124 HOH HOH . H 6 HOH A 122 622 125 HOH HOH . H 6 HOH A 123 623 126 HOH HOH . H 6 HOH A 124 624 127 HOH HOH . H 6 HOH A 125 625 128 HOH HOH . H 6 HOH A 126 626 129 HOH HOH . H 6 HOH A 127 627 130 HOH HOH . H 6 HOH A 128 628 131 HOH HOH . H 6 HOH A 129 629 132 HOH HOH . H 6 HOH A 130 630 133 HOH HOH . H 6 HOH A 131 631 134 HOH HOH . H 6 HOH A 132 632 135 HOH HOH . H 6 HOH A 133 633 136 HOH HOH . H 6 HOH A 134 634 137 HOH HOH . H 6 HOH A 135 635 138 HOH HOH . H 6 HOH A 136 636 139 HOH HOH . H 6 HOH A 137 637 140 HOH HOH . H 6 HOH A 138 638 142 HOH HOH . H 6 HOH A 139 639 143 HOH HOH . H 6 HOH A 140 640 144 HOH HOH . H 6 HOH A 141 641 145 HOH HOH . H 6 HOH A 142 642 146 HOH HOH . H 6 HOH A 143 643 147 HOH HOH . H 6 HOH A 144 644 148 HOH HOH . H 6 HOH A 145 645 150 HOH HOH . H 6 HOH A 146 646 151 HOH HOH . H 6 HOH A 147 647 152 HOH HOH . H 6 HOH A 148 648 153 HOH HOH . H 6 HOH A 149 649 154 HOH HOH . H 6 HOH A 150 650 155 HOH HOH . H 6 HOH A 151 651 156 HOH HOH . H 6 HOH A 152 652 157 HOH HOH . H 6 HOH A 153 653 158 HOH HOH . H 6 HOH A 154 654 159 HOH HOH . H 6 HOH A 155 655 160 HOH HOH . H 6 HOH A 156 656 161 HOH HOH . H 6 HOH A 157 657 162 HOH HOH . H 6 HOH A 158 658 163 HOH HOH . H 6 HOH A 159 659 164 HOH HOH . H 6 HOH A 160 660 167 HOH HOH . H 6 HOH A 161 661 168 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -1.109 _atom_site.Cartn_y 0.895 _atom_site.Cartn_z 11.946 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.43 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #