data_4IKT # _model_server_result.job_id Wp-graUrV_diWGZpZx9jSw _model_server_result.datetime_utc '2024-11-05 15:22:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ikt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4IKT # _exptl.entry_id 4IKT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.73 _cell.angle_gamma 90 _cell.entry_id 4IKT _cell.length_a 47.185 _cell.length_b 77.372 _cell.length_c 47.69 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IKT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 141 A SER 205 1_555 F K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc2 A O ASN 143 A ASN 207 1_555 F K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? metalc ? metalc3 A O VAL 145 A VAL 209 1_555 F K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc4 A NE2 HIS 148 A HIS 212 1_555 E CO CO . A CO 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc5 A OD1 ASP 165 A ASP 229 1_555 D CO CO . A CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc6 A OD2 ASP 165 A ASP 229 1_555 D CO CO . A CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc7 A OD2 ASP 176 A ASP 240 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc8 A OD1 ASP 176 A ASP 240 1_555 D CO CO . A CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc9 A NE2 HIS 239 A HIS 303 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc10 A OE1 GLU 272 A GLU 336 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc11 A O SER 299 A SER 363 1_555 F K K . A K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc12 A OE2 GLU 303 A GLU 367 1_555 C CO CO . A CO 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc13 A OE1 GLU 303 A GLU 367 1_555 D CO CO . A CO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc14 B N2 TFV . A TFV 401 1_555 E CO CO . A CO 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc15 B N1 TFV . A TFV 401 1_555 E CO CO . A CO 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc16 C CO CO . A CO 402 1_555 H O HOH . A HOH 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.846 ? metalc ? metalc17 D CO CO . A CO 403 1_555 H O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc18 D CO CO . A CO 403 1_555 H O HOH . A HOH 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc19 E CO CO . A CO 404 1_555 H O HOH . A HOH 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc20 E CO CO . A CO 404 1_555 H O HOH . A HOH 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc21 E CO CO . A CO 404 1_555 H O HOH . A HOH 579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc22 F K K . A K 405 1_555 H O HOH . A HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4IKT _atom_sites.fract_transf_matrix[1][1] 0.021193 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00064 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012925 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TFV A 1 401 410 TFV PTF . C 3 CO A 1 402 401 CO CO . D 3 CO A 1 403 402 CO CO . E 3 CO A 1 404 81 CO CO . F 4 K A 1 405 404 K K . G 5 GOL A 1 406 470 GOL GOL . H 6 HOH A 1 501 1 HOH HOH . H 6 HOH A 2 502 2 HOH HOH . H 6 HOH A 3 503 3 HOH HOH . H 6 HOH A 4 504 4 HOH HOH . H 6 HOH A 5 505 5 HOH HOH . H 6 HOH A 6 506 6 HOH HOH . H 6 HOH A 7 507 7 HOH HOH . H 6 HOH A 8 508 8 HOH HOH . H 6 HOH A 9 509 9 HOH HOH . H 6 HOH A 10 510 10 HOH HOH . H 6 HOH A 11 511 11 HOH HOH . H 6 HOH A 12 512 12 HOH HOH . H 6 HOH A 13 513 13 HOH HOH . H 6 HOH A 14 514 14 HOH HOH . H 6 HOH A 15 515 15 HOH HOH . H 6 HOH A 16 516 16 HOH HOH . H 6 HOH A 17 517 17 HOH HOH . H 6 HOH A 18 518 18 HOH HOH . H 6 HOH A 19 519 19 HOH HOH . H 6 HOH A 20 520 20 HOH HOH . H 6 HOH A 21 521 21 HOH HOH . H 6 HOH A 22 522 22 HOH HOH . H 6 HOH A 23 523 23 HOH HOH . H 6 HOH A 24 524 24 HOH HOH . H 6 HOH A 25 525 25 HOH HOH . H 6 HOH A 26 526 26 HOH HOH . H 6 HOH A 27 527 27 HOH HOH . H 6 HOH A 28 528 28 HOH HOH . H 6 HOH A 29 529 29 HOH HOH . H 6 HOH A 30 530 30 HOH HOH . H 6 HOH A 31 531 31 HOH HOH . H 6 HOH A 32 532 32 HOH HOH . H 6 HOH A 33 533 33 HOH HOH . H 6 HOH A 34 534 34 HOH HOH . H 6 HOH A 35 535 35 HOH HOH . H 6 HOH A 36 536 37 HOH HOH . H 6 HOH A 37 537 38 HOH HOH . H 6 HOH A 38 538 39 HOH HOH . H 6 HOH A 39 539 40 HOH HOH . H 6 HOH A 40 540 41 HOH HOH . H 6 HOH A 41 541 42 HOH HOH . H 6 HOH A 42 542 43 HOH HOH . H 6 HOH A 43 543 44 HOH HOH . H 6 HOH A 44 544 45 HOH HOH . H 6 HOH A 45 545 46 HOH HOH . H 6 HOH A 46 546 47 HOH HOH . H 6 HOH A 47 547 48 HOH HOH . H 6 HOH A 48 548 49 HOH HOH . H 6 HOH A 49 549 50 HOH HOH . H 6 HOH A 50 550 51 HOH HOH . H 6 HOH A 51 551 52 HOH HOH . H 6 HOH A 52 552 53 HOH HOH . H 6 HOH A 53 553 54 HOH HOH . H 6 HOH A 54 554 55 HOH HOH . H 6 HOH A 55 555 56 HOH HOH . H 6 HOH A 56 556 57 HOH HOH . H 6 HOH A 57 557 58 HOH HOH . H 6 HOH A 58 558 59 HOH HOH . H 6 HOH A 59 559 60 HOH HOH . H 6 HOH A 60 560 61 HOH HOH . H 6 HOH A 61 561 62 HOH HOH . H 6 HOH A 62 562 63 HOH HOH . H 6 HOH A 63 563 64 HOH HOH . H 6 HOH A 64 564 65 HOH HOH . H 6 HOH A 65 565 66 HOH HOH . H 6 HOH A 66 566 67 HOH HOH . H 6 HOH A 67 567 68 HOH HOH . H 6 HOH A 68 568 69 HOH HOH . H 6 HOH A 69 569 70 HOH HOH . H 6 HOH A 70 570 71 HOH HOH . H 6 HOH A 71 571 73 HOH HOH . H 6 HOH A 72 572 74 HOH HOH . H 6 HOH A 73 573 75 HOH HOH . H 6 HOH A 74 574 76 HOH HOH . H 6 HOH A 75 575 77 HOH HOH . H 6 HOH A 76 576 78 HOH HOH . H 6 HOH A 77 577 82 HOH HOH . H 6 HOH A 78 578 83 HOH HOH . H 6 HOH A 79 579 84 HOH HOH . H 6 HOH A 80 580 85 HOH HOH . H 6 HOH A 81 581 87 HOH HOH . H 6 HOH A 82 582 88 HOH HOH . H 6 HOH A 83 583 89 HOH HOH . H 6 HOH A 84 584 90 HOH HOH . H 6 HOH A 85 585 91 HOH HOH . H 6 HOH A 86 586 92 HOH HOH . H 6 HOH A 87 587 93 HOH HOH . H 6 HOH A 88 588 94 HOH HOH . H 6 HOH A 89 589 95 HOH HOH . H 6 HOH A 90 590 96 HOH HOH . H 6 HOH A 91 591 97 HOH HOH . H 6 HOH A 92 592 98 HOH HOH . H 6 HOH A 93 593 99 HOH HOH . H 6 HOH A 94 594 100 HOH HOH . H 6 HOH A 95 595 101 HOH HOH . H 6 HOH A 96 596 102 HOH HOH . H 6 HOH A 97 597 103 HOH HOH . H 6 HOH A 98 598 104 HOH HOH . H 6 HOH A 99 599 105 HOH HOH . H 6 HOH A 100 600 106 HOH HOH . H 6 HOH A 101 601 107 HOH HOH . H 6 HOH A 102 602 108 HOH HOH . H 6 HOH A 103 603 109 HOH HOH . H 6 HOH A 104 604 110 HOH HOH . H 6 HOH A 105 605 111 HOH HOH . H 6 HOH A 106 606 112 HOH HOH . H 6 HOH A 107 607 113 HOH HOH . H 6 HOH A 108 608 114 HOH HOH . H 6 HOH A 109 609 115 HOH HOH . H 6 HOH A 110 610 116 HOH HOH . H 6 HOH A 111 611 121 HOH HOH . H 6 HOH A 112 612 122 HOH HOH . H 6 HOH A 113 613 123 HOH HOH . H 6 HOH A 114 614 124 HOH HOH . H 6 HOH A 115 615 125 HOH HOH . H 6 HOH A 116 616 126 HOH HOH . H 6 HOH A 117 617 127 HOH HOH . H 6 HOH A 118 618 128 HOH HOH . H 6 HOH A 119 619 129 HOH HOH . H 6 HOH A 120 620 130 HOH HOH . H 6 HOH A 121 621 131 HOH HOH . H 6 HOH A 122 622 132 HOH HOH . H 6 HOH A 123 623 133 HOH HOH . H 6 HOH A 124 624 134 HOH HOH . H 6 HOH A 125 625 135 HOH HOH . H 6 HOH A 126 626 136 HOH HOH . H 6 HOH A 127 627 137 HOH HOH . H 6 HOH A 128 628 138 HOH HOH . H 6 HOH A 129 629 139 HOH HOH . H 6 HOH A 130 630 140 HOH HOH . H 6 HOH A 131 631 141 HOH HOH . H 6 HOH A 132 632 142 HOH HOH . H 6 HOH A 133 633 143 HOH HOH . H 6 HOH A 134 634 144 HOH HOH . H 6 HOH A 135 635 145 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 23.001 _atom_site.Cartn_y -0.253 _atom_site.Cartn_z 9.036 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 13.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 1 #