data_4IKZ # _model_server_result.job_id eGCl15k_Zh2te853AOQn3w _model_server_result.datetime_utc '2024-12-22 02:17:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ikz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":607}' # _entry.id 4IKZ # _exptl.entry_id 4IKZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 196.141 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(1R)-1-phosphonoethyl]-L-alaninamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.65 _cell.angle_gamma 90 _cell.entry_id 4IKZ _cell.length_a 53.527 _cell.length_b 94.083 _cell.length_c 57.859 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H13 N2 O4 P' _chem_comp.formula_weight 196.141 _chem_comp.id AFS _chem_comp.mon_nstd_flag . _chem_comp.name N-[(1R)-1-phosphonoethyl]-L-alaninamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Alafosfalin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CB1 CA1 AFS sing 1 n n CA1 N1 AFS sing 2 n n CA1 C1 AFS sing 3 n n O23 P AFS doub 4 n n N2 C1 AFS sing 5 n n N2 CA2 AFS sing 6 n n C1 O1 AFS doub 7 n n P O22 AFS sing 8 n n P CA2 AFS sing 9 n n P O21 AFS sing 10 n n CA2 CB2 AFS sing 11 n n N1 H1 AFS sing 12 n n N1 H2 AFS sing 13 n n CA1 H4 AFS sing 14 n n CB1 H5 AFS sing 15 n n CB1 H6 AFS sing 16 n n CB1 H7 AFS sing 17 n n N2 H8 AFS sing 18 n n CA2 H9 AFS sing 19 n n CB2 H10 AFS sing 20 n n CB2 H11 AFS sing 21 n n CB2 H12 AFS sing 22 n n O21 H13 AFS sing 23 n n O22 H14 AFS sing 24 n n # _atom_sites.entry_id 4IKZ _atom_sites.fract_transf_matrix[1][1] 0.018682 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007798 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010629 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018728 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 601 2 SO4 SO4 . C 2 SO4 A 1 602 3 SO4 SO4 . D 2 SO4 A 1 603 4 SO4 SO4 . E 2 SO4 A 1 604 5 SO4 SO4 . F 2 SO4 A 1 605 6 SO4 SO4 . G 2 SO4 A 1 606 7 SO4 SO4 . H 3 AFS A 1 607 1 AFS AFS . I 4 HOH A 1 701 1 HOH HOH . I 4 HOH A 2 702 2 HOH HOH . I 4 HOH A 3 703 3 HOH HOH . I 4 HOH A 4 704 4 HOH HOH . I 4 HOH A 5 705 5 HOH HOH . I 4 HOH A 6 706 6 HOH HOH . I 4 HOH A 7 707 7 HOH HOH . I 4 HOH A 8 708 8 HOH HOH . I 4 HOH A 9 709 9 HOH HOH . I 4 HOH A 10 710 10 HOH HOH . I 4 HOH A 11 711 11 HOH HOH . I 4 HOH A 12 712 12 HOH HOH . I 4 HOH A 13 713 13 HOH HOH . I 4 HOH A 14 714 14 HOH HOH . I 4 HOH A 15 715 15 HOH HOH . I 4 HOH A 16 716 16 HOH HOH . I 4 HOH A 17 717 17 HOH HOH . I 4 HOH A 18 718 18 HOH HOH . I 4 HOH A 19 719 19 HOH HOH . I 4 HOH A 20 720 20 HOH HOH . I 4 HOH A 21 721 21 HOH HOH . I 4 HOH A 22 722 22 HOH HOH . I 4 HOH A 23 723 23 HOH HOH . I 4 HOH A 24 724 24 HOH HOH . I 4 HOH A 25 725 25 HOH HOH . I 4 HOH A 26 726 26 HOH HOH . I 4 HOH A 27 727 27 HOH HOH . I 4 HOH A 28 728 28 HOH HOH . I 4 HOH A 29 729 29 HOH HOH . I 4 HOH A 30 730 30 HOH HOH . I 4 HOH A 31 731 31 HOH HOH . I 4 HOH A 32 732 32 HOH HOH . I 4 HOH A 33 733 33 HOH HOH . I 4 HOH A 34 734 34 HOH HOH . I 4 HOH A 35 735 35 HOH HOH . I 4 HOH A 36 736 36 HOH HOH . I 4 HOH A 37 737 37 HOH HOH . I 4 HOH A 38 738 38 HOH HOH . I 4 HOH A 39 739 39 HOH HOH . I 4 HOH A 40 740 40 HOH HOH . I 4 HOH A 41 741 41 HOH HOH . I 4 HOH A 42 742 42 HOH HOH . I 4 HOH A 43 743 43 HOH HOH . I 4 HOH A 44 744 45 HOH HOH . I 4 HOH A 45 745 48 HOH HOH . I 4 HOH A 46 746 49 HOH HOH . I 4 HOH A 47 747 50 HOH HOH . I 4 HOH A 48 748 55 HOH HOH . I 4 HOH A 49 749 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 AFS . . . H 3 14.103 15.391 3.149 1 72.09 ? O1 AFS 607 A 1 HETATM 2 N N1 AFS . . . H 3 11.892 14.415 1.84 1 43.94 ? N1 AFS 607 A 1 HETATM 3 C CA1 AFS . . . H 3 13.182 14.436 1.207 1 66.21 ? CA1 AFS 607 A 1 HETATM 4 C C1 AFS . . . H 3 14.237 14.575 2.249 1 68.44 ? C1 AFS 607 A 1 HETATM 5 C CB1 AFS . . . H 3 13.271 15.581 0.257 1 55.6 ? CB1 AFS 607 A 1 HETATM 6 N N2 AFS . . . H 3 15.405 13.75 2.189 1 61.25 ? N2 AFS 607 A 1 HETATM 7 C CA2 AFS . . . H 3 16.425 13.874 3.188 1 73.76 ? CA2 AFS 607 A 1 HETATM 8 C CB2 AFS . . . H 3 17.118 12.563 3.369 1 57.65 ? CB2 AFS 607 A 1 HETATM 9 P P AFS . . . H 3 17.638 15.142 2.686 1 44.89 ? P AFS 607 A 1 HETATM 10 O O21 AFS . . . H 3 19.007 14.934 3.253 1 73.58 ? O21 AFS 607 A 1 HETATM 11 O O22 AFS . . . H 3 17.284 16.536 3.098 1 57.05 ? O22 AFS 607 A 1 HETATM 12 O O23 AFS . . . H 3 17.855 15.229 1.208 1 58.82 ? O23 AFS 607 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 600 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #