data_4IL4 # _model_server_result.job_id QybY5elkADbXfwqH3vy8KA _model_server_result.datetime_utc '2024-10-20 19:34:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4il4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":408}' # _entry.id 4IL4 # _exptl.entry_id 4IL4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 573.576 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'dodecyl 4-O-alpha-D-glucopyranosyl-1-seleno-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.7 _cell.angle_gamma 90 _cell.entry_id 4IL4 _cell.length_a 182.069 _cell.length_b 132.491 _cell.length_c 160.219 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IL4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 M N N ? 5 R N N ? 5 W N N ? 5 BA N N ? 5 CA N N ? 5 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 71 A ILE 71 1_555 J NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc2 B O ILE 71 B ILE 71 1_555 P NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc3 C O ILE 71 C ILE 71 1_555 U NA NA . C NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc4 D O ILE 71 D ILE 71 1_555 Z NA NA . D NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? metalc ? metalc5 E O ILE 71 E ILE 71 1_555 FA NA NA . E NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? # _chem_comp.formula 'C24 H46 O10 Se' _chem_comp.formula_weight 573.576 _chem_comp.id LSM _chem_comp.mon_nstd_flag . _chem_comp.name 'dodecyl 4-O-alpha-D-glucopyranosyl-1-seleno-beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms DODECYL-BETA-D-SELENOMALTOSIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag SE C1 LSM sing 200 n n SE C1' LSM sing 201 n n C1 C2 LSM sing 202 n n C1 H1 LSM sing 203 n n C1 H1A LSM sing 204 n n C2 C3 LSM sing 205 n n C2 H2 LSM sing 206 n n C2 H2A LSM sing 207 n n C3 C4 LSM sing 208 n n C3 H3 LSM sing 209 n n C3 H3A LSM sing 210 n n C4 C5 LSM sing 211 n n C4 H4 LSM sing 212 n n C4 H4A LSM sing 213 n n C5 C6 LSM sing 214 n n C5 H5 LSM sing 215 n n C5 H5A LSM sing 216 n n C6 C7 LSM sing 217 n n C6 H6 LSM sing 218 n n C6 H6A LSM sing 219 n n C7 C8 LSM sing 220 n n C7 H7 LSM sing 221 n n C7 H7A LSM sing 222 n n C8 C9 LSM sing 223 n n C8 H8 LSM sing 224 n n C8 H8A LSM sing 225 n n C9 H9 LSM sing 226 n n C9 H9A LSM sing 227 n n C1' C2' LSM sing 228 n n C1' O5' LSM sing 229 n n C1' H1' LSM sing 230 n n C1B O1B LSM sing 231 n n C1B C2B LSM sing 232 n n C1B O5B LSM sing 233 n n C1B H1B LSM sing 234 n n O1B C4' LSM sing 235 n n C2' O2' LSM sing 236 n n C2' C3' LSM sing 237 n n C2' H2' LSM sing 238 n n O2' HO2' LSM sing 239 n n C2B O2B LSM sing 240 n n C2B C3B LSM sing 241 n n C2B H2B LSM sing 242 n n O2B HO2B LSM sing 243 n n C3' O3' LSM sing 244 n n C3' C4' LSM sing 245 n n C3' H3' LSM sing 246 n n O3' HO3' LSM sing 247 n n C3B O3B LSM sing 248 n n C3B C4B LSM sing 249 n n C3B H3B LSM sing 250 n n O3B HO3B LSM sing 251 n n C4' C5' LSM sing 252 n n C4' H4' LSM sing 253 n n O4B C4B LSM sing 254 n n O4B HO4B LSM sing 255 n n C4B C5B LSM sing 256 n n C4B H4B LSM sing 257 n n C5' O5' LSM sing 258 n n C5' C6' LSM sing 259 n n C5' H5' LSM sing 260 n n C5B O5B LSM sing 261 n n C5B C6B LSM sing 262 n n C5B H5B LSM sing 263 n n C6' O6' LSM sing 264 n n C6' H6' LSM sing 265 n n C6' "H6'A" LSM sing 266 n n O6' HO6' LSM sing 267 n n C6B O6B LSM sing 268 n n C6B H6B LSM sing 269 n n C6B H6BA LSM sing 270 n n O6B HO6B LSM sing 271 n n C9 C10 LSM sing 272 n n C10 C11 LSM sing 273 n n C11 C12 LSM sing 274 n n C10 H10 LSM sing 275 n n C10 H10A LSM sing 276 n n C11 H11 LSM sing 277 n n C11 H11A LSM sing 278 n n C12 H12 LSM sing 279 n n C12 H12A LSM sing 280 n n C12 H12B LSM sing 281 n n # _atom_sites.entry_id 4IL4 _atom_sites.fract_transf_matrix[1][1] 0.005492 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001238 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006398 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ACT A 1 401 4 ACT ACT . G 3 CL A 1 402 3 CL CL . H 3 CL A 1 403 6 CL CL . I 3 CL A 1 404 8 CL CL . J 4 NA A 1 405 9 NA NA . K 4 NA A 1 406 14 NA NA . L 2 ACT A 1 407 1 ACT ACT . M 5 LSM A 1 408 4 LSM LSM . N 2 ACT B 1 401 3 ACT ACT . O 3 CL B 1 402 4 CL CL . P 4 NA B 1 403 10 NA NA . Q 2 ACT B 1 404 4 ACT ACT . R 5 LSM B 1 405 5 LSM LSM . S 2 ACT C 1 401 2 ACT ACT . T 3 CL C 1 402 5 CL CL . U 4 NA C 1 403 11 NA NA . V 2 ACT C 1 404 5 ACT ACT . W 5 LSM C 1 405 6 LSM LSM . X 2 ACT D 1 401 1 ACT ACT . Y 3 CL D 1 402 1 CL CL . Z 4 NA D 1 403 12 NA NA . AA 2 ACT D 1 404 2 ACT ACT . BA 5 LSM D 1 405 1 LSM LSM . CA 5 LSM D 1 406 2 LSM LSM . DA 2 ACT E 1 401 5 ACT ACT . EA 3 CL E 1 402 2 CL CL . FA 4 NA E 1 403 13 NA NA . GA 2 ACT E 1 404 3 ACT ACT . HA 5 LSM E 1 405 3 LSM LSM . IA 6 HOH A 1 501 13 HOH HOH . IA 6 HOH A 2 502 24 HOH HOH . IA 6 HOH A 3 503 25 HOH HOH . IA 6 HOH A 4 504 32 HOH HOH . JA 6 HOH B 1 501 2 HOH HOH . JA 6 HOH B 2 502 3 HOH HOH . JA 6 HOH B 3 503 4 HOH HOH . JA 6 HOH B 4 504 5 HOH HOH . JA 6 HOH B 5 505 6 HOH HOH . JA 6 HOH B 6 506 7 HOH HOH . JA 6 HOH B 7 507 8 HOH HOH . JA 6 HOH B 8 508 15 HOH HOH . JA 6 HOH B 9 509 21 HOH HOH . JA 6 HOH B 10 510 26 HOH HOH . JA 6 HOH B 11 511 30 HOH HOH . KA 6 HOH C 1 501 11 HOH HOH . KA 6 HOH C 2 502 12 HOH HOH . KA 6 HOH C 3 503 19 HOH HOH . KA 6 HOH C 4 504 20 HOH HOH . KA 6 HOH C 5 505 27 HOH HOH . LA 6 HOH D 1 501 10 HOH HOH . LA 6 HOH D 2 502 14 HOH HOH . LA 6 HOH D 3 503 23 HOH HOH . LA 6 HOH D 4 504 28 HOH HOH . LA 6 HOH D 5 505 31 HOH HOH . MA 6 HOH E 1 501 1 HOH HOH . MA 6 HOH E 2 502 9 HOH HOH . MA 6 HOH E 3 503 16 HOH HOH . MA 6 HOH E 4 504 17 HOH HOH . MA 6 HOH E 5 505 22 HOH HOH . MA 6 HOH E 6 506 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 SE SE LSM . . . M 5 47.686 -21.689 36.453 1 123.2 ? SE LSM 408 A 1 HETATM 2 C C1 LSM . . . M 5 48.298 -22.808 37.787 1 114.03 ? C1 LSM 408 A 1 HETATM 3 C C2 LSM . . . M 5 49.694 -22.342 38.229 1 103.89 ? C2 LSM 408 A 1 HETATM 4 C C3 LSM . . . M 5 50.265 -23.183 39.4 1 94.78 ? C3 LSM 408 A 1 HETATM 5 C C4 LSM . . . M 5 51.074 -22.258 40.337 1 88.41 ? C4 LSM 408 A 1 HETATM 6 C C5 LSM . . . M 5 52.141 -22.986 41.172 1 82.41 ? C5 LSM 408 A 1 HETATM 7 C C6 LSM . . . M 5 53.233 -22.009 41.662 1 77.53 ? C6 LSM 408 A 1 HETATM 8 C C7 LSM . . . M 5 54.049 -22.594 42.813 1 75.26 ? C7 LSM 408 A 1 HETATM 9 C C8 LSM . . . M 5 55.29 -21.728 43.077 1 74.44 ? C8 LSM 408 A 1 HETATM 10 C C9 LSM . . . M 5 56.488 -22.55 43.57 1 73.19 ? C9 LSM 408 A 1 HETATM 11 C C1' LSM . . . M 5 46.211 -20.983 37.219 1 123.91 ? C1' LSM 408 A 1 HETATM 12 C C10 LSM . . . M 5 57.009 -22.011 44.914 1 72.87 ? C10 LSM 408 A 1 HETATM 13 C C11 LSM . . . M 5 58.494 -22.324 45.136 1 72.12 ? C11 LSM 408 A 1 HETATM 14 C C12 LSM . . . M 5 58.947 -21.959 46.535 1 69.85 ? C12 LSM 408 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #