data_4IL9 # _model_server_result.job_id kynIJu-YUuzb_Uvlxt5ABQ _model_server_result.datetime_utc '2024-11-21 14:19:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4il9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":404}' # _entry.id 4IL9 # _exptl.entry_id 4IL9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 622.834 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIUNDECYL PHOSPHATIDYL CHOLINE' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.16 _cell.angle_gamma 90 _cell.entry_id 4IL9 _cell.length_a 180.52 _cell.length_b 132.14 _cell.length_c 159.96 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 T N N ? 3 U N N ? 3 DA N N ? 3 EA N N ? 3 OA N N ? 3 PA N N ? 3 ZA N N ? 3 AB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 72 A PRO 68 1_555 Q NA NA . A NA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.165 ? metalc ? metalc2 A O ILE 75 A ILE 71 1_555 Q NA NA . A NA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc3 B O ILE 75 B ILE 71 1_555 AA NA NA . B NA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc4 C O PRO 72 C PRO 68 1_555 LA NA NA . C NA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc5 C O ILE 75 C ILE 71 1_555 LA NA NA . C NA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc6 D O ILE 75 D ILE 71 1_555 WA NA NA . D NA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc7 E O PRO 72 E PRO 68 1_555 GB NA NA . E NA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.001 ? metalc ? metalc8 E O ILE 75 E ILE 71 1_555 GB NA NA . E NA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? # _chem_comp.formula 'C32 H65 N O8 P 1' _chem_comp.formula_weight 622.834 _chem_comp.id PLC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIUNDECYL PHOSPHATIDYL CHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLC sing 348 n n C1 O3P PLC sing 349 n n C1 H11 PLC sing 350 n n C1 H12 PLC sing 351 n n C2 C3 PLC sing 352 n n C2 O2 PLC sing 353 n n C2 H2 PLC sing 354 n n C3 O3 PLC sing 355 n n C3 H31 PLC sing 356 n n C3 H32 PLC sing 357 n n C4 C5 PLC sing 358 n n C4 O4P PLC sing 359 n n C4 H41 PLC sing 360 n n C4 H42 PLC sing 361 n n C5 N PLC sing 362 n n C5 H51 PLC sing 363 n n C5 H52 PLC sing 364 n n C6 N PLC sing 365 n n C6 H61 PLC sing 366 n n C6 H62 PLC sing 367 n n C6 H63 PLC sing 368 n n C7 N PLC sing 369 n n C7 H71 PLC sing 370 n n C7 H72 PLC sing 371 n n C7 H73 PLC sing 372 n n C8 N PLC sing 373 n n C8 H81 PLC sing 374 n n C8 H82 PLC sing 375 n n C8 H83 PLC sing 376 n n C' C1' PLC sing 377 n n C' O' PLC doub 378 n n C' O2 PLC sing 379 n n C1' C2' PLC sing 380 n n C1' "H1'1" PLC sing 381 n n C1' "H1'2" PLC sing 382 n n C2' C3' PLC sing 383 n n C2' "H2'1" PLC sing 384 n n C2' "H2'2" PLC sing 385 n n C3' C4' PLC sing 386 n n C3' "H3'1" PLC sing 387 n n C3' "H3'2" PLC sing 388 n n C4' C5' PLC sing 389 n n C4' "H4'1" PLC sing 390 n n C4' "H4'2" PLC sing 391 n n C5' C6' PLC sing 392 n n C5' "H5'1" PLC sing 393 n n C5' "H5'2" PLC sing 394 n n C6' C7' PLC sing 395 n n C6' "H6'1" PLC sing 396 n n C6' "H6'2" PLC sing 397 n n C7' C8' PLC sing 398 n n C7' "H7'1" PLC sing 399 n n C7' "H7'2" PLC sing 400 n n C8' C9' PLC sing 401 n n C8' "H8'1" PLC sing 402 n n C8' "H8'2" PLC sing 403 n n C9' CA' PLC sing 404 n n C9' "H9'1" PLC sing 405 n n C9' "H9'2" PLC sing 406 n n CA' CB' PLC sing 407 n n CA' "HT'1" PLC sing 408 n n CA' "HT'2" PLC sing 409 n n CB' "HE'1" PLC sing 410 n n CB' "HE'2" PLC sing 411 n n CB' "HE'3" PLC sing 412 n n CB C1B PLC sing 413 n n CB OB PLC doub 414 n n CB O3 PLC sing 415 n n C1B C2B PLC sing 416 n n C1B H1A1 PLC sing 417 n n C1B H1A2 PLC sing 418 n n C2B C3B PLC sing 419 n n C2B H2A1 PLC sing 420 n n C2B H2A2 PLC sing 421 n n C3B C4B PLC sing 422 n n C3B H3A1 PLC sing 423 n n C3B H3A2 PLC sing 424 n n C4B C5B PLC sing 425 n n C4B H4A1 PLC sing 426 n n C4B H4A2 PLC sing 427 n n C5B C6B PLC sing 428 n n C5B H5A1 PLC sing 429 n n C5B H5A2 PLC sing 430 n n C6B C7B PLC sing 431 n n C6B H6A1 PLC sing 432 n n C6B H6A2 PLC sing 433 n n C7B C8B PLC sing 434 n n C7B H7A1 PLC sing 435 n n C7B H7A2 PLC sing 436 n n C8B C9B PLC sing 437 n n C8B H8A1 PLC sing 438 n n C8B H8A2 PLC sing 439 n n C9B CAA PLC sing 440 n n C9B H9A1 PLC sing 441 n n C9B H9A2 PLC sing 442 n n CAA CBA PLC sing 443 n n CAA HTA1 PLC sing 444 n n CAA HTA2 PLC sing 445 n n CBA HEA1 PLC sing 446 n n CBA HEA2 PLC sing 447 n n CBA HEA3 PLC sing 448 n n O1P P PLC doub 449 n n O2P P PLC sing 450 n n O2P HOP2 PLC sing 451 n n O3P P PLC sing 452 n n O4P P PLC sing 453 n n # _atom_sites.entry_id 4IL9 _atom_sites.fract_transf_matrix[1][1] 0.00554 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001194 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ACT A 1 401 4 ACT ACT . G 2 ACT A 1 402 6 ACT ACT . H 3 PLC A 1 403 1 PLC PLC . I 3 PLC A 1 404 3 PLC PLC . J 4 UNL A 1 405 5 UNL UNK . K 4 UNL A 1 406 6 UNL UNK . L 5 BR A 1 407 2 BR BR . M 5 BR A 1 408 7 BR BR . N 5 BR A 1 409 11 BR BR . O 6 LMT A 1 410 5 LMT LMT . P 7 NA A 1 411 1 NA NA . Q 7 NA A 1 412 3 NA NA . R 2 ACT B 1 401 3 ACT ACT . S 2 ACT B 1 402 9 ACT ACT . T 3 PLC B 1 403 4 PLC PLC . U 3 PLC B 1 404 6 PLC PLC . V 4 UNL B 1 405 1 UNL UNK . W 4 UNL B 1 406 7 UNL UNK . X 5 BR B 1 407 1 BR BR . Y 5 BR B 1 408 12 BR BR . Z 6 LMT B 1 409 6 LMT LMT . AA 7 NA B 1 410 4 NA NA . BA 2 ACT C 1 401 2 ACT ACT . CA 2 ACT C 1 402 10 ACT ACT . DA 3 PLC C 1 403 7 PLC PLC . EA 3 PLC C 1 404 9 PLC PLC . FA 4 UNL C 1 405 2 UNL UNK . GA 4 UNL C 1 406 8 UNL UNK . HA 5 BR C 1 407 5 BR BR . IA 5 BR C 1 408 8 BR BR . JA 6 LMT C 1 409 1 LMT LMT . KA 6 LMT C 1 410 4 LMT LMT . LA 7 NA C 1 411 5 NA NA . MA 2 ACT D 1 401 1 ACT ACT . NA 2 ACT D 1 402 7 ACT ACT . OA 3 PLC D 1 403 10 PLC PLC . PA 3 PLC D 1 404 12 PLC PLC . QA 4 UNL D 1 405 3 UNL UNK . RA 4 UNL D 1 406 9 UNL UNK . SA 5 BR D 1 407 4 BR BR . TA 5 BR D 1 408 6 BR BR . UA 5 BR D 1 409 9 BR BR . VA 6 LMT D 1 410 2 LMT LMT . WA 7 NA D 1 411 6 NA NA . XA 2 ACT E 1 401 5 ACT ACT . YA 2 ACT E 1 402 8 ACT ACT . ZA 3 PLC E 1 403 13 PLC PLC . AB 3 PLC E 1 404 15 PLC PLC . BB 4 UNL E 1 405 4 UNL UNK . CB 4 UNL E 1 406 10 UNL UNK . DB 5 BR E 1 407 3 BR BR . EB 5 BR E 1 408 10 BR BR . FB 6 LMT E 1 409 3 LMT LMT . GB 7 NA E 1 410 2 NA NA . HB 8 HOH A 1 501 1 HOH HOH . HB 8 HOH A 2 502 3 HOH HOH . HB 8 HOH A 3 503 4 HOH HOH . HB 8 HOH A 4 504 5 HOH HOH . HB 8 HOH A 5 505 13 HOH HOH . HB 8 HOH A 6 506 36 HOH HOH . HB 8 HOH A 7 507 39 HOH HOH . HB 8 HOH A 8 508 49 HOH HOH . HB 8 HOH A 9 509 50 HOH HOH . HB 8 HOH A 10 510 51 HOH HOH . HB 8 HOH A 11 511 54 HOH HOH . HB 8 HOH A 12 512 55 HOH HOH . HB 8 HOH A 13 513 70 HOH HOH . HB 8 HOH A 14 514 73 HOH HOH . HB 8 HOH A 15 515 82 HOH HOH . HB 8 HOH A 16 516 92 HOH HOH . HB 8 HOH A 17 517 94 HOH HOH . IB 8 HOH B 1 501 8 HOH HOH . IB 8 HOH B 2 502 10 HOH HOH . IB 8 HOH B 3 503 11 HOH HOH . IB 8 HOH B 4 504 12 HOH HOH . IB 8 HOH B 5 505 14 HOH HOH . IB 8 HOH B 6 506 47 HOH HOH . IB 8 HOH B 7 507 59 HOH HOH . IB 8 HOH B 8 508 61 HOH HOH . IB 8 HOH B 9 509 62 HOH HOH . IB 8 HOH B 10 510 77 HOH HOH . IB 8 HOH B 11 511 78 HOH HOH . IB 8 HOH B 12 512 79 HOH HOH . IB 8 HOH B 13 513 80 HOH HOH . IB 8 HOH B 14 514 81 HOH HOH . IB 8 HOH B 15 515 83 HOH HOH . IB 8 HOH B 16 516 93 HOH HOH . IB 8 HOH B 17 517 98 HOH HOH . IB 8 HOH B 18 518 101 HOH HOH . JB 8 HOH C 1 501 15 HOH HOH . JB 8 HOH C 2 502 16 HOH HOH . JB 8 HOH C 3 503 17 HOH HOH . JB 8 HOH C 4 504 18 HOH HOH . JB 8 HOH C 5 505 19 HOH HOH . JB 8 HOH C 6 506 20 HOH HOH . JB 8 HOH C 7 507 21 HOH HOH . JB 8 HOH C 8 508 22 HOH HOH . JB 8 HOH C 9 509 23 HOH HOH . JB 8 HOH C 10 510 24 HOH HOH . JB 8 HOH C 11 511 25 HOH HOH . JB 8 HOH C 12 512 26 HOH HOH . JB 8 HOH C 13 513 57 HOH HOH . JB 8 HOH C 14 514 58 HOH HOH . JB 8 HOH C 15 515 67 HOH HOH . JB 8 HOH C 16 516 74 HOH HOH . JB 8 HOH C 17 517 75 HOH HOH . JB 8 HOH C 18 518 84 HOH HOH . JB 8 HOH C 19 519 89 HOH HOH . JB 8 HOH C 20 520 95 HOH HOH . JB 8 HOH C 21 521 97 HOH HOH . JB 8 HOH C 22 522 99 HOH HOH . JB 8 HOH C 23 523 100 HOH HOH . KB 8 HOH D 1 501 28 HOH HOH . KB 8 HOH D 2 502 30 HOH HOH . KB 8 HOH D 3 503 31 HOH HOH . KB 8 HOH D 4 504 32 HOH HOH . KB 8 HOH D 5 505 33 HOH HOH . KB 8 HOH D 6 506 34 HOH HOH . KB 8 HOH D 7 507 46 HOH HOH . KB 8 HOH D 8 508 52 HOH HOH . KB 8 HOH D 9 509 65 HOH HOH . KB 8 HOH D 10 510 66 HOH HOH . KB 8 HOH D 11 511 68 HOH HOH . KB 8 HOH D 12 512 69 HOH HOH . KB 8 HOH D 13 513 71 HOH HOH . KB 8 HOH D 14 514 86 HOH HOH . KB 8 HOH D 15 515 88 HOH HOH . KB 8 HOH D 16 516 90 HOH HOH . LB 8 HOH E 1 501 35 HOH HOH . LB 8 HOH E 2 502 38 HOH HOH . LB 8 HOH E 3 503 41 HOH HOH . LB 8 HOH E 4 504 43 HOH HOH . LB 8 HOH E 5 505 44 HOH HOH . LB 8 HOH E 6 506 45 HOH HOH . LB 8 HOH E 7 507 48 HOH HOH . LB 8 HOH E 8 508 53 HOH HOH . LB 8 HOH E 9 509 63 HOH HOH . LB 8 HOH E 10 510 72 HOH HOH . LB 8 HOH E 11 511 85 HOH HOH . LB 8 HOH E 12 512 87 HOH HOH . LB 8 HOH E 13 513 91 HOH HOH . LB 8 HOH E 14 514 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CB PLC . . . EA 3 58.719 -53.264 48.729 1 76.47 ? CB PLC 404 C 1 HETATM 2 C C1B PLC . . . EA 3 57.944 -53.769 47.497 1 77.27 ? C1B PLC 404 C 1 HETATM 3 C C2B PLC . . . EA 3 58.25 -55.245 47.201 1 76.9 ? C2B PLC 404 C 1 HETATM 4 C C3B PLC . . . EA 3 56.966 -56.022 46.847 1 76.19 ? C3B PLC 404 C 1 HETATM 5 C C4B PLC . . . EA 3 56.897 -56.399 45.361 1 75.18 ? C4B PLC 404 C 1 HETATM 6 C C5B PLC . . . EA 3 55.842 -57.488 45.123 1 74.65 ? C5B PLC 404 C 1 HETATM 7 C C6B PLC . . . EA 3 55.698 -57.885 43.653 1 74.31 ? C6B PLC 404 C 1 HETATM 8 C C7B PLC . . . EA 3 54.57 -58.918 43.499 1 75.41 ? C7B PLC 404 C 1 HETATM 9 C C8B PLC . . . EA 3 54.534 -59.542 42.092 1 77.07 ? C8B PLC 404 C 1 HETATM 10 C C9B PLC . . . EA 3 53.405 -60.569 41.85 1 78.39 ? C9B PLC 404 C 1 HETATM 11 C CAA PLC . . . EA 3 53.548 -61.21 40.448 1 78.69 ? CAA PLC 404 C 1 HETATM 12 C CBA PLC . . . EA 3 52.348 -62.055 40.116 1 78.37 ? CBA PLC 404 C 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #