data_4ILB # _model_server_result.job_id idldz9kXY8a0YRoTUSTWjw _model_server_result.datetime_utc '2024-11-19 05:21:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ilb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":403}' # _entry.id 4ILB # _exptl.entry_id 4ILB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 622.834 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIUNDECYL PHOSPHATIDYL CHOLINE' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.09 _cell.angle_gamma 90 _cell.entry_id 4ILB _cell.length_a 180.984 _cell.length_b 132.412 _cell.length_c 159.884 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ILB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 R N N ? 3 S N N ? 3 AA N N ? 3 BA N N ? 3 JA N N ? 3 KA N N ? 3 TA N N ? 3 UA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 72 A PRO 68 1_555 L NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? metalc ? metalc2 A O ILE 75 A ILE 71 1_555 L NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc3 A OE1 GLU 226 A GLU 222 1_555 M RB RB . A RB 408 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc4 M RB RB . A RB 408 1_555 B OE1 GLU 226 B GLU 222 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.535 ? metalc ? metalc5 M RB RB . A RB 408 1_555 C OE1 GLU 226 C GLU 222 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.596 ? metalc ? metalc6 M RB RB . A RB 408 1_555 D OE1 GLU 226 D GLU 222 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.554 ? metalc ? metalc7 M RB RB . A RB 408 1_555 E OE1 GLU 226 E GLU 222 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.633 ? metalc ? metalc8 B O PRO 72 B PRO 68 1_555 W NA NA . B NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.941 ? metalc ? metalc9 B O ILE 75 B ILE 71 1_555 W NA NA . B NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc10 C O PRO 72 C PRO 68 1_555 FA NA NA . C NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc11 C O ILE 75 C ILE 71 1_555 FA NA NA . C NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc12 D O ILE 75 D ILE 71 1_555 PA NA NA . D NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc13 E O PRO 72 E PRO 68 1_555 YA NA NA . E NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc14 E O ILE 75 E ILE 71 1_555 YA NA NA . E NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? # _chem_comp.formula 'C32 H65 N O8 P 1' _chem_comp.formula_weight 622.834 _chem_comp.id PLC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIUNDECYL PHOSPHATIDYL CHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLC sing 348 n n C1 O3P PLC sing 349 n n C1 H11 PLC sing 350 n n C1 H12 PLC sing 351 n n C2 C3 PLC sing 352 n n C2 O2 PLC sing 353 n n C2 H2 PLC sing 354 n n C3 O3 PLC sing 355 n n C3 H31 PLC sing 356 n n C3 H32 PLC sing 357 n n C4 C5 PLC sing 358 n n C4 O4P PLC sing 359 n n C4 H41 PLC sing 360 n n C4 H42 PLC sing 361 n n C5 N PLC sing 362 n n C5 H51 PLC sing 363 n n C5 H52 PLC sing 364 n n C6 N PLC sing 365 n n C6 H61 PLC sing 366 n n C6 H62 PLC sing 367 n n C6 H63 PLC sing 368 n n C7 N PLC sing 369 n n C7 H71 PLC sing 370 n n C7 H72 PLC sing 371 n n C7 H73 PLC sing 372 n n C8 N PLC sing 373 n n C8 H81 PLC sing 374 n n C8 H82 PLC sing 375 n n C8 H83 PLC sing 376 n n C' C1' PLC sing 377 n n C' O' PLC doub 378 n n C' O2 PLC sing 379 n n C1' C2' PLC sing 380 n n C1' "H1'1" PLC sing 381 n n C1' "H1'2" PLC sing 382 n n C2' C3' PLC sing 383 n n C2' "H2'1" PLC sing 384 n n C2' "H2'2" PLC sing 385 n n C3' C4' PLC sing 386 n n C3' "H3'1" PLC sing 387 n n C3' "H3'2" PLC sing 388 n n C4' C5' PLC sing 389 n n C4' "H4'1" PLC sing 390 n n C4' "H4'2" PLC sing 391 n n C5' C6' PLC sing 392 n n C5' "H5'1" PLC sing 393 n n C5' "H5'2" PLC sing 394 n n C6' C7' PLC sing 395 n n C6' "H6'1" PLC sing 396 n n C6' "H6'2" PLC sing 397 n n C7' C8' PLC sing 398 n n C7' "H7'1" PLC sing 399 n n C7' "H7'2" PLC sing 400 n n C8' C9' PLC sing 401 n n C8' "H8'1" PLC sing 402 n n C8' "H8'2" PLC sing 403 n n C9' CA' PLC sing 404 n n C9' "H9'1" PLC sing 405 n n C9' "H9'2" PLC sing 406 n n CA' CB' PLC sing 407 n n CA' "HT'1" PLC sing 408 n n CA' "HT'2" PLC sing 409 n n CB' "HE'1" PLC sing 410 n n CB' "HE'2" PLC sing 411 n n CB' "HE'3" PLC sing 412 n n CB C1B PLC sing 413 n n CB OB PLC doub 414 n n CB O3 PLC sing 415 n n C1B C2B PLC sing 416 n n C1B H1A1 PLC sing 417 n n C1B H1A2 PLC sing 418 n n C2B C3B PLC sing 419 n n C2B H2A1 PLC sing 420 n n C2B H2A2 PLC sing 421 n n C3B C4B PLC sing 422 n n C3B H3A1 PLC sing 423 n n C3B H3A2 PLC sing 424 n n C4B C5B PLC sing 425 n n C4B H4A1 PLC sing 426 n n C4B H4A2 PLC sing 427 n n C5B C6B PLC sing 428 n n C5B H5A1 PLC sing 429 n n C5B H5A2 PLC sing 430 n n C6B C7B PLC sing 431 n n C6B H6A1 PLC sing 432 n n C6B H6A2 PLC sing 433 n n C7B C8B PLC sing 434 n n C7B H7A1 PLC sing 435 n n C7B H7A2 PLC sing 436 n n C8B C9B PLC sing 437 n n C8B H8A1 PLC sing 438 n n C8B H8A2 PLC sing 439 n n C9B CAA PLC sing 440 n n C9B H9A1 PLC sing 441 n n C9B H9A2 PLC sing 442 n n CAA CBA PLC sing 443 n n CAA HTA1 PLC sing 444 n n CAA HTA2 PLC sing 445 n n CBA HEA1 PLC sing 446 n n CBA HEA2 PLC sing 447 n n CBA HEA3 PLC sing 448 n n O1P P PLC doub 449 n n O2P P PLC sing 450 n n O2P HOP2 PLC sing 451 n n O3P P PLC sing 452 n n O4P P PLC sing 453 n n # _atom_sites.entry_id 4ILB _atom_sites.fract_transf_matrix[1][1] 0.005525 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001184 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007552 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 LMT A 1 401 5 LMT LMT . G 3 PLC A 1 402 1 PLC PLC . H 3 PLC A 1 403 3 PLC PLC . I 4 UNL A 1 404 5 UNL UNK . J 4 UNL A 1 405 6 UNL UNK . K 5 CL A 1 406 2 CL CL . L 6 NA A 1 407 5 NA NA . M 7 RB A 1 408 1 RB RB . N 8 ACT A 1 409 4 ACT ACT . O 8 ACT A 1 410 6 ACT ACT . P 2 LMT B 1 401 4 LMT LMT . Q 2 LMT B 1 402 6 LMT LMT . R 3 PLC B 1 403 4 PLC PLC . S 3 PLC B 1 404 6 PLC PLC . T 4 UNL B 1 405 1 UNL UNK . U 4 UNL B 1 406 7 UNL UNK . V 5 CL B 1 407 3 CL CL . W 6 NA B 1 408 1 NA NA . X 8 ACT B 1 409 3 ACT ACT . Y 8 ACT B 1 410 9 ACT ACT . Z 2 LMT C 1 401 1 LMT LMT . AA 3 PLC C 1 402 7 PLC PLC . BA 3 PLC C 1 403 9 PLC PLC . CA 4 UNL C 1 404 2 UNL UNK . DA 4 UNL C 1 405 8 UNL UNK . EA 5 CL C 1 406 4 CL CL . FA 6 NA C 1 407 2 NA NA . GA 8 ACT C 1 408 1 ACT ACT . HA 8 ACT C 1 409 2 ACT ACT . IA 2 LMT D 1 401 2 LMT LMT . JA 3 PLC D 1 402 10 PLC PLC . KA 3 PLC D 1 403 12 PLC PLC . LA 4 UNL D 1 404 3 UNL UNK . MA 4 UNL D 1 405 9 UNL UNK . NA 5 CL D 1 406 5 CL CL . OA 6 NA D 1 407 1 NA NA . PA 6 NA D 1 408 3 NA NA . QA 8 ACT D 1 409 7 ACT ACT . RA 8 ACT D 1 410 10 ACT ACT . SA 2 LMT E 1 401 3 LMT LMT . TA 3 PLC E 1 402 13 PLC PLC . UA 3 PLC E 1 403 15 PLC PLC . VA 4 UNL E 1 404 4 UNL UNK . WA 4 UNL E 1 405 10 UNL UNK . XA 5 CL E 1 406 1 CL CL . YA 6 NA E 1 407 4 NA NA . ZA 8 ACT E 1 408 5 ACT ACT . AB 8 ACT E 1 409 8 ACT ACT . BB 9 HOH A 1 501 4 HOH HOH . BB 9 HOH A 2 502 8 HOH HOH . BB 9 HOH A 3 503 9 HOH HOH . BB 9 HOH A 4 504 14 HOH HOH . BB 9 HOH A 5 505 20 HOH HOH . BB 9 HOH A 6 506 33 HOH HOH . BB 9 HOH A 7 507 38 HOH HOH . BB 9 HOH A 8 508 40 HOH HOH . BB 9 HOH A 9 509 51 HOH HOH . BB 9 HOH A 10 510 64 HOH HOH . BB 9 HOH A 11 511 80 HOH HOH . BB 9 HOH A 12 512 92 HOH HOH . BB 9 HOH A 13 513 102 HOH HOH . BB 9 HOH A 14 514 105 HOH HOH . CB 9 HOH B 1 501 6 HOH HOH . CB 9 HOH B 2 502 7 HOH HOH . CB 9 HOH B 3 503 18 HOH HOH . CB 9 HOH B 4 504 19 HOH HOH . CB 9 HOH B 5 505 22 HOH HOH . CB 9 HOH B 6 506 31 HOH HOH . CB 9 HOH B 7 507 39 HOH HOH . CB 9 HOH B 8 508 41 HOH HOH . CB 9 HOH B 9 509 48 HOH HOH . CB 9 HOH B 10 510 53 HOH HOH . CB 9 HOH B 11 511 65 HOH HOH . CB 9 HOH B 12 512 68 HOH HOH . CB 9 HOH B 13 513 76 HOH HOH . CB 9 HOH B 14 514 78 HOH HOH . CB 9 HOH B 15 515 82 HOH HOH . CB 9 HOH B 16 516 83 HOH HOH . CB 9 HOH B 17 517 88 HOH HOH . CB 9 HOH B 18 518 94 HOH HOH . CB 9 HOH B 19 519 103 HOH HOH . CB 9 HOH B 20 520 106 HOH HOH . DB 9 HOH C 1 501 5 HOH HOH . DB 9 HOH C 2 502 16 HOH HOH . DB 9 HOH C 3 503 24 HOH HOH . DB 9 HOH C 4 504 25 HOH HOH . DB 9 HOH C 5 505 28 HOH HOH . DB 9 HOH C 6 506 34 HOH HOH . DB 9 HOH C 7 507 45 HOH HOH . DB 9 HOH C 8 508 49 HOH HOH . DB 9 HOH C 9 509 59 HOH HOH . DB 9 HOH C 10 510 60 HOH HOH . DB 9 HOH C 11 511 63 HOH HOH . DB 9 HOH C 12 512 70 HOH HOH . DB 9 HOH C 13 513 90 HOH HOH . DB 9 HOH C 14 514 93 HOH HOH . DB 9 HOH C 15 515 99 HOH HOH . DB 9 HOH C 16 516 107 HOH HOH . EB 9 HOH D 1 501 1 HOH HOH . EB 9 HOH D 2 502 2 HOH HOH . EB 9 HOH D 3 503 11 HOH HOH . EB 9 HOH D 4 504 21 HOH HOH . EB 9 HOH D 5 505 23 HOH HOH . EB 9 HOH D 6 506 26 HOH HOH . EB 9 HOH D 7 507 27 HOH HOH . EB 9 HOH D 8 508 36 HOH HOH . EB 9 HOH D 9 509 37 HOH HOH . EB 9 HOH D 10 510 46 HOH HOH . EB 9 HOH D 11 511 55 HOH HOH . EB 9 HOH D 12 512 56 HOH HOH . EB 9 HOH D 13 513 95 HOH HOH . EB 9 HOH D 14 514 98 HOH HOH . EB 9 HOH D 15 515 100 HOH HOH . EB 9 HOH D 16 516 104 HOH HOH . FB 9 HOH E 1 501 10 HOH HOH . FB 9 HOH E 2 502 15 HOH HOH . FB 9 HOH E 3 503 29 HOH HOH . FB 9 HOH E 4 504 32 HOH HOH . FB 9 HOH E 5 505 35 HOH HOH . FB 9 HOH E 6 506 47 HOH HOH . FB 9 HOH E 7 507 58 HOH HOH . FB 9 HOH E 8 508 61 HOH HOH . FB 9 HOH E 9 509 62 HOH HOH . FB 9 HOH E 10 510 66 HOH HOH . FB 9 HOH E 11 511 72 HOH HOH . FB 9 HOH E 12 512 73 HOH HOH . FB 9 HOH E 13 513 75 HOH HOH . FB 9 HOH E 14 514 77 HOH HOH . FB 9 HOH E 15 515 89 HOH HOH . FB 9 HOH E 16 516 91 HOH HOH . FB 9 HOH E 17 517 96 HOH HOH . FB 9 HOH E 18 518 97 HOH HOH . FB 9 HOH E 19 519 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CB PLC . . . H 3 43.962 -4.953 55.917 1 77.35 ? CB PLC 403 A 1 HETATM 2 C C1B PLC . . . H 3 43.411 -3.985 54.857 1 77.53 ? C1B PLC 403 A 1 HETATM 3 C C2B PLC . . . H 3 42.409 -2.975 55.478 1 76.21 ? C2B PLC 403 A 1 HETATM 4 C C3B PLC . . . H 3 42.122 -1.789 54.53 1 74.73 ? C3B PLC 403 A 1 HETATM 5 C C4B PLC . . . H 3 40.888 -2.006 53.624 1 74.62 ? C4B PLC 403 A 1 HETATM 6 C C5B PLC . . . H 3 40.491 -0.73 52.844 1 73.28 ? C5B PLC 403 A 1 HETATM 7 C C6B PLC . . . H 3 39.133 -0.849 52.129 1 72.31 ? C6B PLC 403 A 1 HETATM 8 C C7B PLC . . . H 3 38.881 0.436 51.311 1 72.65 ? C7B PLC 403 A 1 HETATM 9 C C8B PLC . . . H 3 37.543 0.442 50.526 1 71.1 ? C8B PLC 403 A 1 HETATM 10 C C9B PLC . . . H 3 37.338 1.662 49.596 1 67.77 ? C9B PLC 403 A 1 HETATM 11 C CAA PLC . . . H 3 35.835 1.928 49.347 1 65.71 ? CAA PLC 403 A 1 HETATM 12 C CBA PLC . . . H 3 35.648 2.935 48.236 1 65.05 ? CBA PLC 403 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #