data_4ILC # _model_server_result.job_id nTG7XJOsvMm_ayuxRsQvPA _model_server_result.datetime_utc '2024-11-19 05:37:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ilc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"WA","auth_seq_id":402}' # _entry.id 4ILC # _exptl.entry_id 4ILC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 622.834 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIUNDECYL PHOSPHATIDYL CHOLINE' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.02 _cell.angle_gamma 90 _cell.entry_id 4ILC _cell.length_a 182.328 _cell.length_b 132.1 _cell.length_c 161.137 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ILC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 R N N ? 3 S N N ? 3 BA N N ? 3 CA N N ? 3 MA N N ? 3 NA N N ? 3 WA N N ? 3 XA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 75 A ILE 71 1_555 O NA NA . A NA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc2 B O PRO 72 B PRO 68 1_555 Y NA NA . B NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc3 B O ILE 75 B ILE 71 1_555 Y NA NA . B NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc4 C O PRO 72 C PRO 68 1_555 JA NA NA . C NA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.196 ? metalc ? metalc5 C O ILE 75 C ILE 71 1_555 JA NA NA . C NA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc6 D O ILE 75 D ILE 71 1_555 TA NA NA . D NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc7 E O PRO 72 E PRO 68 1_555 DB NA NA . E NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.131 ? metalc ? metalc8 E O ILE 75 E ILE 71 1_555 DB NA NA . E NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? # _chem_comp.formula 'C32 H65 N O8 P 1' _chem_comp.formula_weight 622.834 _chem_comp.id PLC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIUNDECYL PHOSPHATIDYL CHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLC sing 348 n n C1 O3P PLC sing 349 n n C1 H11 PLC sing 350 n n C1 H12 PLC sing 351 n n C2 C3 PLC sing 352 n n C2 O2 PLC sing 353 n n C2 H2 PLC sing 354 n n C3 O3 PLC sing 355 n n C3 H31 PLC sing 356 n n C3 H32 PLC sing 357 n n C4 C5 PLC sing 358 n n C4 O4P PLC sing 359 n n C4 H41 PLC sing 360 n n C4 H42 PLC sing 361 n n C5 N PLC sing 362 n n C5 H51 PLC sing 363 n n C5 H52 PLC sing 364 n n C6 N PLC sing 365 n n C6 H61 PLC sing 366 n n C6 H62 PLC sing 367 n n C6 H63 PLC sing 368 n n C7 N PLC sing 369 n n C7 H71 PLC sing 370 n n C7 H72 PLC sing 371 n n C7 H73 PLC sing 372 n n C8 N PLC sing 373 n n C8 H81 PLC sing 374 n n C8 H82 PLC sing 375 n n C8 H83 PLC sing 376 n n C' C1' PLC sing 377 n n C' O' PLC doub 378 n n C' O2 PLC sing 379 n n C1' C2' PLC sing 380 n n C1' "H1'1" PLC sing 381 n n C1' "H1'2" PLC sing 382 n n C2' C3' PLC sing 383 n n C2' "H2'1" PLC sing 384 n n C2' "H2'2" PLC sing 385 n n C3' C4' PLC sing 386 n n C3' "H3'1" PLC sing 387 n n C3' "H3'2" PLC sing 388 n n C4' C5' PLC sing 389 n n C4' "H4'1" PLC sing 390 n n C4' "H4'2" PLC sing 391 n n C5' C6' PLC sing 392 n n C5' "H5'1" PLC sing 393 n n C5' "H5'2" PLC sing 394 n n C6' C7' PLC sing 395 n n C6' "H6'1" PLC sing 396 n n C6' "H6'2" PLC sing 397 n n C7' C8' PLC sing 398 n n C7' "H7'1" PLC sing 399 n n C7' "H7'2" PLC sing 400 n n C8' C9' PLC sing 401 n n C8' "H8'1" PLC sing 402 n n C8' "H8'2" PLC sing 403 n n C9' CA' PLC sing 404 n n C9' "H9'1" PLC sing 405 n n C9' "H9'2" PLC sing 406 n n CA' CB' PLC sing 407 n n CA' "HT'1" PLC sing 408 n n CA' "HT'2" PLC sing 409 n n CB' "HE'1" PLC sing 410 n n CB' "HE'2" PLC sing 411 n n CB' "HE'3" PLC sing 412 n n CB C1B PLC sing 413 n n CB OB PLC doub 414 n n CB O3 PLC sing 415 n n C1B C2B PLC sing 416 n n C1B H1A1 PLC sing 417 n n C1B H1A2 PLC sing 418 n n C2B C3B PLC sing 419 n n C2B H2A1 PLC sing 420 n n C2B H2A2 PLC sing 421 n n C3B C4B PLC sing 422 n n C3B H3A1 PLC sing 423 n n C3B H3A2 PLC sing 424 n n C4B C5B PLC sing 425 n n C4B H4A1 PLC sing 426 n n C4B H4A2 PLC sing 427 n n C5B C6B PLC sing 428 n n C5B H5A1 PLC sing 429 n n C5B H5A2 PLC sing 430 n n C6B C7B PLC sing 431 n n C6B H6A1 PLC sing 432 n n C6B H6A2 PLC sing 433 n n C7B C8B PLC sing 434 n n C7B H7A1 PLC sing 435 n n C7B H7A2 PLC sing 436 n n C8B C9B PLC sing 437 n n C8B H8A1 PLC sing 438 n n C8B H8A2 PLC sing 439 n n C9B CAA PLC sing 440 n n C9B H9A1 PLC sing 441 n n C9B H9A2 PLC sing 442 n n CAA CBA PLC sing 443 n n CAA HTA1 PLC sing 444 n n CAA HTA2 PLC sing 445 n n CBA HEA1 PLC sing 446 n n CBA HEA2 PLC sing 447 n n CBA HEA3 PLC sing 448 n n O1P P PLC doub 449 n n O2P P PLC sing 450 n n O2P HOP2 PLC sing 451 n n O3P P PLC sing 452 n n O4P P PLC sing 453 n n # _atom_sites.entry_id 4ILC _atom_sites.fract_transf_matrix[1][1] 0.005485 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001268 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00637 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ACT A 1 401 4 ACT ACT . G 3 PLC A 1 402 1 PLC PLC . H 3 PLC A 1 403 3 PLC PLC . I 4 UNL A 1 404 5 UNL UNK . J 4 UNL A 1 405 6 UNL UNK . K 5 CL A 1 406 3 CL CL . L 2 ACT A 1 407 1 ACT ACT . M 6 LMT A 1 408 4 LMT LMT . N 6 LMT A 1 409 5 LMT LMT . O 7 NA A 1 410 2 NA NA . P 8 SO4 A 1 411 2 SO4 SO4 . Q 2 ACT B 1 401 3 ACT ACT . R 3 PLC B 1 402 4 PLC PLC . S 3 PLC B 1 403 6 PLC PLC . T 4 UNL B 1 404 1 UNL UNK . U 4 UNL B 1 405 7 UNL UNK . V 5 CL B 1 406 4 CL CL . W 2 ACT B 1 407 4 ACT ACT . X 6 LMT B 1 408 6 LMT LMT . Y 7 NA B 1 409 3 NA NA . Z 8 SO4 B 1 410 1 SO4 SO4 . AA 2 ACT C 1 401 2 ACT ACT . BA 3 PLC C 1 402 7 PLC PLC . CA 3 PLC C 1 403 9 PLC PLC . DA 4 UNL C 1 404 2 UNL UNK . EA 4 UNL C 1 405 8 UNL UNK . FA 5 CL C 1 406 5 CL CL . GA 2 ACT C 1 407 5 ACT ACT . HA 6 LMT C 1 408 1 LMT LMT . IA 7 NA C 1 409 1 NA NA . JA 7 NA C 1 410 4 NA NA . KA 8 SO4 C 1 411 5 SO4 SO4 . LA 2 ACT D 1 401 1 ACT ACT . MA 3 PLC D 1 402 10 PLC PLC . NA 3 PLC D 1 403 12 PLC PLC . OA 4 UNL D 1 404 3 UNL UNK . PA 4 UNL D 1 405 9 UNL UNK . QA 5 CL D 1 406 1 CL CL . RA 2 ACT D 1 407 2 ACT ACT . SA 6 LMT D 1 408 2 LMT LMT . TA 7 NA D 1 409 5 NA NA . UA 8 SO4 D 1 410 4 SO4 SO4 . VA 2 ACT E 1 401 5 ACT ACT . WA 3 PLC E 1 402 13 PLC PLC . XA 3 PLC E 1 403 15 PLC PLC . YA 4 UNL E 1 404 4 UNL UNK . ZA 4 UNL E 1 405 10 UNL UNK . AB 5 CL E 1 406 2 CL CL . BB 2 ACT E 1 407 3 ACT ACT . CB 6 LMT E 1 408 3 LMT LMT . DB 7 NA E 1 409 6 NA NA . EB 8 SO4 E 1 410 3 SO4 SO4 . FB 9 HOH A 1 501 4 HOH HOH . FB 9 HOH A 2 502 40 HOH HOH . GB 9 HOH B 1 501 5 HOH HOH . GB 9 HOH B 2 502 8 HOH HOH . GB 9 HOH B 3 503 9 HOH HOH . GB 9 HOH B 4 504 10 HOH HOH . GB 9 HOH B 5 505 11 HOH HOH . GB 9 HOH B 6 506 17 HOH HOH . GB 9 HOH B 7 507 18 HOH HOH . GB 9 HOH B 8 508 21 HOH HOH . GB 9 HOH B 9 509 25 HOH HOH . GB 9 HOH B 10 510 30 HOH HOH . GB 9 HOH B 11 511 36 HOH HOH . HB 9 HOH C 1 501 1 HOH HOH . HB 9 HOH C 2 502 2 HOH HOH . HB 9 HOH C 3 503 6 HOH HOH . HB 9 HOH C 4 504 12 HOH HOH . HB 9 HOH C 5 505 16 HOH HOH . HB 9 HOH C 6 506 19 HOH HOH . HB 9 HOH C 7 507 37 HOH HOH . IB 9 HOH D 1 501 7 HOH HOH . IB 9 HOH D 2 502 13 HOH HOH . IB 9 HOH D 3 503 20 HOH HOH . IB 9 HOH D 4 504 23 HOH HOH . IB 9 HOH D 5 505 26 HOH HOH . IB 9 HOH D 6 506 27 HOH HOH . IB 9 HOH D 7 507 28 HOH HOH . IB 9 HOH D 8 508 29 HOH HOH . IB 9 HOH D 9 509 31 HOH HOH . IB 9 HOH D 10 510 32 HOH HOH . IB 9 HOH D 11 511 33 HOH HOH . IB 9 HOH D 12 512 34 HOH HOH . IB 9 HOH D 13 513 35 HOH HOH . IB 9 HOH D 14 514 38 HOH HOH . JB 9 HOH E 1 501 3 HOH HOH . JB 9 HOH E 2 502 14 HOH HOH . JB 9 HOH E 3 503 15 HOH HOH . JB 9 HOH E 4 504 22 HOH HOH . JB 9 HOH E 5 505 24 HOH HOH . JB 9 HOH E 6 506 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLC . . . WA 3 70.779 -2.398 28.591 1 129.08 ? C1 PLC 402 E 1 HETATM 2 C C2 PLC . . . WA 3 70.55 -3.435 29.732 1 122.18 ? C2 PLC 402 E 1 HETATM 3 C C3 PLC . . . WA 3 71.837 -3.729 30.576 1 117.68 ? C3 PLC 402 E 1 HETATM 4 C C4 PLC . . . WA 3 72.814 -3.202 23.843 1 138.62 ? C4 PLC 402 E 1 HETATM 5 C C5 PLC . . . WA 3 74.055 -2.263 24.054 1 138.47 ? C5 PLC 402 E 1 HETATM 6 C C6 PLC . . . WA 3 76.274 -1.36 23.504 1 137.93 ? C6 PLC 402 E 1 HETATM 7 C C7 PLC . . . WA 3 76.112 -3.764 23.947 1 137.78 ? C7 PLC 402 E 1 HETATM 8 C C8 PLC . . . WA 3 75.189 -2.83 21.797 1 138.26 ? C8 PLC 402 E 1 HETATM 9 C C' PLC . . . WA 3 69.307 -1.924 31.47 1 110.03 ? C' PLC 402 E 1 HETATM 10 C C1' PLC . . . WA 3 69.661 -2.048 32.944 1 97.98 ? C1' PLC 402 E 1 HETATM 11 C C2' PLC . . . WA 3 68.48 -1.705 33.855 1 87.8 ? C2' PLC 402 E 1 HETATM 12 C C3' PLC . . . WA 3 68.187 -2.869 34.778 1 80.71 ? C3' PLC 402 E 1 HETATM 13 C C4' PLC . . . WA 3 68.88 -2.786 36.132 1 78.07 ? C4' PLC 402 E 1 HETATM 14 C C5' PLC . . . WA 3 68.557 -4.013 37.019 1 77.78 ? C5' PLC 402 E 1 HETATM 15 C C6' PLC . . . WA 3 68.834 -3.753 38.518 1 75.34 ? C6' PLC 402 E 1 HETATM 16 C C7' PLC . . . WA 3 68.621 -4.996 39.394 1 73.07 ? C7' PLC 402 E 1 HETATM 17 C CB PLC . . . WA 3 72.367 -5.165 32.491 1 107.74 ? CB PLC 402 E 1 HETATM 18 C C1B PLC . . . WA 3 71.752 -6.077 33.514 1 102.71 ? C1B PLC 402 E 1 HETATM 19 C C2B PLC . . . WA 3 71.335 -5.318 34.778 1 98.17 ? C2B PLC 402 E 1 HETATM 20 C C3B PLC . . . WA 3 71.904 -5.998 36.027 1 94.87 ? C3B PLC 402 E 1 HETATM 21 C C4B PLC . . . WA 3 71.15 -7.241 36.508 1 91.84 ? C4B PLC 402 E 1 HETATM 22 C C5B PLC . . . WA 3 71.457 -7.569 37.975 1 91.56 ? C5B PLC 402 E 1 HETATM 23 C C6B PLC . . . WA 3 72.533 -8.648 38.145 1 91.66 ? C6B PLC 402 E 1 HETATM 24 C C7B PLC . . . WA 3 72.231 -9.513 39.373 1 92.88 ? C7B PLC 402 E 1 HETATM 25 O O' PLC . . . WA 3 68.864 -0.918 30.907 1 111.51 ? O' PLC 402 E 1 HETATM 26 O OB PLC . . . WA 3 73.559 -4.938 32.387 1 108.93 ? OB PLC 402 E 1 HETATM 27 O O2 PLC . . . WA 3 69.424 -3.053 30.604 1 118.76 ? O2 PLC 402 E 1 HETATM 28 O O3 PLC . . . WA 3 71.441 -4.621 31.622 1 112.87 ? O3 PLC 402 E 1 HETATM 29 O O1P PLC . . . WA 3 69.943 -2.812 25.232 1 144.43 ? O1P PLC 402 E 1 HETATM 30 O O2P PLC . . . WA 3 71.759 -1.029 25.865 1 144.74 ? O2P PLC 402 E 1 HETATM 31 O O3P PLC . . . WA 3 71.142 -3.085 27.417 1 135.99 ? O3P PLC 402 E 1 HETATM 32 O O4P PLC . . . WA 3 72.31 -3.432 25.127 1 140.89 ? O4P PLC 402 E 1 HETATM 33 N N PLC . . . WA 3 75.374 -2.593 23.308 1 138 ? N PLC 402 E 1 HETATM 34 P P PLC . . . WA 3 71.298 -2.432 25.959 1 143.14 ? P PLC 402 E 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 34 #