data_4ILD # _model_server_result.job_id N_zyYhjjfrnm2rMKE0VIBQ _model_server_result.datetime_utc '2024-10-11 14:22:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ild # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":2411}' # _entry.id 4ILD # _exptl.entry_id 4ILD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.23 _cell.angle_gamma 90 _cell.entry_id 4ILD _cell.length_a 136.72 _cell.length_b 54.45 _cell.length_c 95.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ILD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 2401 NAG 2 n C NAG 2 C 2 NAG A 2402 NAG 2 n D NAG 1 D 1 NAG A 2403 NAG 2 n D NAG 2 D 2 NAG A 2404 NAG 2 n E NAG 1 E 1 NAG A 2405 NAG 2 n E NAG 2 E 2 NAG A 2406 NAG 2 n F NAG 1 F 1 NAG A 2407 NAG 2 n F NAG 2 F 2 NAG A 2408 NAG 2 n G NAG 1 G 1 NAG B 2401 NAG 2 n G NAG 2 G 2 NAG B 2402 NAG 2 n H NAG 1 H 1 NAG B 2403 NAG 2 n H NAG 2 H 2 NAG B 2404 NAG 2 n I NAG 1 I 1 NAG B 2405 NAG 2 n I NAG 2 I 2 NAG B 2406 NAG 2 n J NAG 1 J 1 NAG B 2407 NAG 2 n J NAG 2 J 2 NAG B 2408 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 796 1_555 A SG CYS 55 A CYS 832 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? disulf ? disulf2 A SG CYS 45 A CYS 822 1_555 A SG CYS 83 A CYS 860 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 A SG CYS 96 A CYS 873 1_555 A SG CYS 104 A CYS 881 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 120 A CYS 897 1_555 A SG CYS 141 A CYS 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf5 A SG CYS 123 A CYS 900 1_555 A SG CYS 157 A CYS 934 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf6 A SG CYS 172 A CYS 949 1_555 A SG CYS 193 A CYS 970 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 A SG CYS 210 A CYS 987 1_555 B SG CYS 210 B CYS 987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 B SG CYS 19 B CYS 796 1_555 B SG CYS 55 B CYS 832 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf9 B SG CYS 45 B CYS 822 1_555 B SG CYS 83 B CYS 860 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf10 B SG CYS 96 B CYS 873 1_555 B SG CYS 104 B CYS 881 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? disulf ? disulf11 B SG CYS 120 B CYS 897 1_555 B SG CYS 141 B CYS 918 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf12 B SG CYS 123 B CYS 900 1_555 B SG CYS 157 B CYS 934 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf13 B SG CYS 172 B CYS 949 1_555 B SG CYS 193 B CYS 970 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? covale ? covale1 A ND2 ASN 32 A ASN 809 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale2 A ND2 ASN 101 A ASN 878 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale3 A ND2 ASN 145 A ASN 922 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale4 A ND2 ASN 213 A ASN 990 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale5 B ND2 ASN 32 B ASN 809 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 B ND2 ASN 101 B ASN 878 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale7 B ND2 ASN 145 B ASN 922 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale8 B ND2 ASN 213 B ASN 990 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale9 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale11 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale12 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale13 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale14 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale15 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale16 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? metalc ? metalc1 A OD2 ASP 11 A ASP 788 1_555 K CA CA . A CA 2409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc2 A OD1 ASP 108 A ASP 885 1_555 L CA CA . A CA 2410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc3 A OD2 ASP 108 A ASP 885 1_555 L CA CA . A CA 2410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc4 B OD1 ASP 22 B ASP 799 1_555 R U IUM . B IUM 2413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc5 B OD2 ASP 22 B ASP 799 1_555 R U IUM . B IUM 2413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.58 ? metalc ? metalc6 B OE1 GLU 129 B GLU 906 1_555 P U IUM . B IUM 2411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc7 B OE1 GLU 131 B GLU 908 1_555 P U IUM . B IUM 2411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.514 ? metalc ? metalc8 B NZ LYS 176 B LYS 953 1_555 P U IUM . B IUM 2411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.295 ? metalc ? metalc9 B OE1 GLU 197 B GLU 974 1_555 O U IUM . B IUM 2410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? metalc ? metalc10 B OD2 ASP 244 B ASP 1021 1_555 N CA CA . B CA 2409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc11 B OD1 ASP 244 B ASP 1021 1_555 N CA CA . B CA 2409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc12 P U IUM . B IUM 2411 1_555 Q O1 IUM . B IUM 2412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.346 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4ILD _atom_sites.fract_transf_matrix[1][1] 0.007314 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000285 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 3 CA A 1 2409 2409 CA CA . L 3 CA A 1 2410 2410 CA CA . M 3 CA A 1 2411 2411 CA CA . N 3 CA B 1 2409 2409 CA CA . O 4 IUM B 1 2410 2410 IUM IUM . P 4 IUM B 1 2411 2411 IUM IUM . Q 4 IUM B 1 2412 2412 IUM IUM . R 4 IUM B 1 2413 2413 IUM IUM . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 3 _atom_site.Cartn_x 30.991 _atom_site.Cartn_y -7.319 _atom_site.Cartn_z -23.255 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 2411 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #