data_4IM3 # _model_server_result.job_id u7J1XUXfXBwMJcm0ewbIcg _model_server_result.datetime_utc '2024-11-25 06:33:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4im3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 4IM3 # _exptl.entry_id 4IM3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 591.468 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(3-{[5-iodo-4-({3-[(thiophen-2-ylcarbonyl)amino]propyl}amino)pyrimidin-2-yl]amino}phenyl)pyrrolidine-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IM3 _cell.length_a 141.32 _cell.length_b 141.32 _cell.length_c 85.421 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IM3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_764 -x+2,-x+y+1,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 211.98 122.38671 -28.473667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 97 A CYS 91 1_555 G HG HG . A HG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.171 ? metalc ? metalc2 A SG CYS 429 A CYS 423 1_555 D HG HG . A HG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.375 ? metalc ? metalc3 A SG CYS 432 A CYS 426 1_555 E HG HG . A HG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.168 ? metalc ? metalc4 A SG CYS 477 A CYS 471 1_555 C HG HG . A HG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.198 ? metalc ? metalc5 A SG CYS 564 A CYS 558 1_555 F HG HG . A HG 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.213 ? # _chem_comp.formula 'C23 H26 I N7 O2 S' _chem_comp.formula_weight 591.468 _chem_comp.id BX7 _chem_comp.mon_nstd_flag . _chem_comp.name N-(3-{[5-iodo-4-({3-[(thiophen-2-ylcarbonyl)amino]propyl}amino)pyrimidin-2-yl]amino}phenyl)pyrrolidine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C34 C33 BX7 doub 70 n y C34 S02 BX7 sing 71 n y C33 C32 BX7 sing 72 n y S02 C31 BX7 sing 73 n y C32 C31 BX7 doub 74 n y C31 C29 BX7 sing 75 n n C29 O04 BX7 doub 76 n n C29 N09 BX7 sing 77 n n N09 C23 BX7 sing 78 n n I01 C28 BX7 sing 79 n n C23 C19 BX7 sing 80 n n N07 C21 BX7 sing 81 n n N07 C26 BX7 sing 82 n n C21 C19 BX7 sing 83 n n C28 C26 BX7 doub 84 n y C28 C30 BX7 sing 85 n y C26 N10 BX7 sing 86 n y C30 N11 BX7 doub 87 n y N10 C27 BX7 doub 88 n y N11 C27 BX7 sing 89 n y C27 N08 BX7 sing 90 n n C25 C24 BX7 doub 91 n y C25 C22 BX7 sing 92 n y C24 C20 BX7 sing 93 n y N08 C22 BX7 sing 94 n n C22 C18 BX7 doub 95 n y C20 C17 BX7 doub 96 n y C18 C17 BX7 sing 97 n y C17 N06 BX7 sing 98 n n O03 C16 BX7 doub 99 n n N06 C16 BX7 sing 100 n n C16 N05 BX7 sing 101 n n N05 C15 BX7 sing 102 n n N05 C14 BX7 sing 103 n n C15 C12 BX7 sing 104 n n C14 C13 BX7 sing 105 n n C12 C13 BX7 sing 106 n n N06 H1 BX7 sing 107 n n N07 H2 BX7 sing 108 n n N08 H3 BX7 sing 109 n n N09 H4 BX7 sing 110 n n C12 H5 BX7 sing 111 n n C12 H6 BX7 sing 112 n n C13 H7 BX7 sing 113 n n C13 H8 BX7 sing 114 n n C14 H9 BX7 sing 115 n n C14 H10 BX7 sing 116 n n C15 H11 BX7 sing 117 n n C15 H12 BX7 sing 118 n n C18 H13 BX7 sing 119 n n C19 H14 BX7 sing 120 n n C19 H15 BX7 sing 121 n n C20 H16 BX7 sing 122 n n C21 H17 BX7 sing 123 n n C21 H18 BX7 sing 124 n n C23 H19 BX7 sing 125 n n C23 H20 BX7 sing 126 n n C24 H21 BX7 sing 127 n n C25 H22 BX7 sing 128 n n C30 H23 BX7 sing 129 n n C32 H24 BX7 sing 130 n n C33 H25 BX7 sing 131 n n C34 H26 BX7 sing 132 n n # _atom_sites.entry_id 4IM3 _atom_sites.fract_transf_matrix[1][1] 0.007076 _atom_sites.fract_transf_matrix[1][2] 0.004085 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BX7 A 1 701 1 BX7 DRG . C 3 HG A 1 702 1 HG HG . D 3 HG A 1 703 2 HG HG . E 3 HG A 1 704 3 HG HG . F 3 HG A 1 705 4 HG HG . G 3 HG A 1 706 5 HG HG . H 4 CL A 1 707 1 CL CL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 I I01 BX7 . A . B 2 113.951 16.768 -31.763 0.46 259.31 ? I01 BX7 701 A 1 HETATM 2 I I01 BX7 . B . B 2 113.984 16.939 -31.98 0.54 263.57 ? I01 BX7 701 A 1 HETATM 3 S S02 BX7 . A . B 2 110.731 11.514 -29.884 0.46 324.5 ? S02 BX7 701 A 1 HETATM 4 S S02 BX7 . B . B 2 110.655 11.553 -29.933 0.54 324.49 ? S02 BX7 701 A 1 HETATM 5 O O03 BX7 . A . B 2 114.746 18.117 -20.783 0.46 134.3 ? O03 BX7 701 A 1 HETATM 6 O O03 BX7 . B . B 2 117.148 19.411 -20.42 0.54 108.24 ? O03 BX7 701 A 1 HETATM 7 O O04 BX7 . A . B 2 110.742 13.235 -26.333 0.46 153.95 ? O04 BX7 701 A 1 HETATM 8 O O04 BX7 . B . B 2 110.832 13.27 -26.386 0.54 154.13 ? O04 BX7 701 A 1 HETATM 9 N N05 BX7 . A . B 2 113.051 16.903 -21.417 0.46 115.43 ? N05 BX7 701 A 1 HETATM 10 N N05 BX7 . B . B 2 118.47 21.145 -20.521 0.54 104.97 ? N05 BX7 701 A 1 HETATM 11 N N06 BX7 . A . B 2 114.42 17.767 -23.024 0.46 122.63 ? N06 BX7 701 A 1 HETATM 12 N N06 BX7 . B . B 2 117.637 20.31 -22.47 0.54 101.67 ? N06 BX7 701 A 1 HETATM 13 N N07 BX7 . A . B 2 113.655 16.226 -28.721 0.46 143.61 ? N07 BX7 701 A 1 HETATM 14 N N07 BX7 . B . B 2 113.852 16.044 -29.012 0.54 143.51 ? N07 BX7 701 A 1 HETATM 15 N N08 BX7 . A . B 2 116.6 19.441 -26.904 0.46 120.51 ? N08 BX7 701 A 1 HETATM 16 N N08 BX7 . B . B 2 116.353 19.402 -26.864 0.54 120.24 ? N08 BX7 701 A 1 HETATM 17 N N09 BX7 . A . B 2 110.815 14.147 -28.421 0.46 147.54 ? N09 BX7 701 A 1 HETATM 18 N N09 BX7 . B . B 2 110.968 14.185 -28.468 0.54 147.37 ? N09 BX7 701 A 1 HETATM 19 N N10 BX7 . A . B 2 115.1 17.813 -27.751 0.46 133.79 ? N10 BX7 701 A 1 HETATM 20 N N10 BX7 . B . B 2 115.087 17.694 -27.911 0.54 134.09 ? N10 BX7 701 A 1 HETATM 21 N N11 BX7 . A . B 2 116.31 19.216 -29.14 0.46 130.58 ? N11 BX7 701 A 1 HETATM 22 N N11 BX7 . B . B 2 116.038 19.433 -29.128 0.54 129.82 ? N11 BX7 701 A 1 HETATM 23 C C12 BX7 . A . B 2 111.648 15.282 -20.294 0.46 106.62 ? C12 BX7 701 A 1 HETATM 24 C C12 BX7 . B . B 2 119.156 22.828 -18.934 0.54 97.26 ? C12 BX7 701 A 1 HETATM 25 C C13 BX7 . A . B 2 110.788 16.079 -21.403 0.46 102.27 ? C13 BX7 701 A 1 HETATM 26 C C13 BX7 . B . B 2 120.349 22.559 -19.988 0.54 102.12 ? C13 BX7 701 A 1 HETATM 27 C C14 BX7 . A . B 2 112.087 16.203 -22.208 0.46 109.33 ? C14 BX7 701 A 1 HETATM 28 C C14 BX7 . B . B 2 119.25 22.239 -21.009 0.54 99.26 ? C14 BX7 701 A 1 HETATM 29 C C15 BX7 . A . B 2 112.462 16.573 -20.153 0.46 112.03 ? C15 BX7 701 A 1 HETATM 30 C C15 BX7 . B . B 2 118.772 21.36 -19.138 0.54 102.41 ? C15 BX7 701 A 1 HETATM 31 C C16 BX7 . A . B 2 114.124 17.624 -21.724 0.46 125.36 ? C16 BX7 701 A 1 HETATM 32 C C16 BX7 . B . B 2 117.718 20.238 -21.135 0.54 105.73 ? C16 BX7 701 A 1 HETATM 33 C C17 BX7 . A . B 2 115.447 18.449 -23.559 0.46 115.71 ? C17 BX7 701 A 1 HETATM 34 C C17 BX7 . B . B 2 116.945 19.507 -23.293 0.54 103.63 ? C17 BX7 701 A 1 HETATM 35 C C18 BX7 . A . B 2 115.509 18.538 -24.947 0.46 117.87 ? C18 BX7 701 A 1 HETATM 36 C C18 BX7 . B . B 2 116.969 19.803 -24.652 0.54 109.51 ? C18 BX7 701 A 1 HETATM 37 C C19 BX7 . A . B 2 111.904 15.947 -27.006 0.46 143.73 ? C19 BX7 701 A 1 HETATM 38 C C19 BX7 . B . B 2 112.31 15.796 -27.125 0.54 143.29 ? C19 BX7 701 A 1 HETATM 39 C C20 BX7 . A . B 2 116.397 19.134 -22.802 0.46 106.32 ? C20 BX7 701 A 1 HETATM 40 C C20 BX7 . B . B 2 116.175 18.432 -22.855 0.54 109 ? C20 BX7 701 A 1 HETATM 41 C C21 BX7 . A . B 2 113.308 15.574 -27.45 0.46 143.21 ? C21 BX7 701 A 1 HETATM 42 C C21 BX7 . B . B 2 113.611 15.311 -27.762 0.54 143.49 ? C21 BX7 701 A 1 HETATM 43 C C22 BX7 . A . B 2 116.467 19.327 -25.577 0.46 115.47 ? C22 BX7 701 A 1 HETATM 44 C C22 BX7 . B . B 2 116.283 19.024 -25.578 0.54 116.9 ? C22 BX7 701 A 1 HETATM 45 C C23 BX7 . A . B 2 110.858 15.576 -28.063 0.46 145.42 ? C23 BX7 701 A 1 HETATM 46 C C23 BX7 . B . B 2 111.129 15.595 -28.079 0.54 145.17 ? C23 BX7 701 A 1 HETATM 47 C C24 BX7 . A . B 2 117.403 19.866 -23.417 0.46 104.27 ? C24 BX7 701 A 1 HETATM 48 C C24 BX7 . B . B 2 115.472 17.651 -23.762 0.54 118.06 ? C24 BX7 701 A 1 HETATM 49 C C25 BX7 . A . B 2 117.441 19.947 -24.801 0.46 108.7 ? C25 BX7 701 A 1 HETATM 50 C C25 BX7 . B . B 2 115.518 17.956 -25.115 0.54 119.65 ? C25 BX7 701 A 1 HETATM 51 C C26 BX7 . A . B 2 114.49 17.259 -28.815 0.46 140.76 ? C26 BX7 701 A 1 HETATM 52 C C26 BX7 . B . B 2 114.572 17.166 -29.031 0.54 141.06 ? C26 BX7 701 A 1 HETATM 53 C C27 BX7 . A . B 2 115.917 18.877 -27.906 0.46 127.13 ? C27 BX7 701 A 1 HETATM 54 C C27 BX7 . B . B 2 115.798 18.837 -27.947 0.54 126.97 ? C27 BX7 701 A 1 HETATM 55 C C28 BX7 . A . B 2 114.837 17.677 -30.088 0.46 140.6 ? C28 BX7 701 A 1 HETATM 56 C C28 BX7 . B . B 2 114.795 17.791 -30.242 0.54 140.67 ? C28 BX7 701 A 1 HETATM 57 C C29 BX7 . A . B 2 110.772 13.134 -27.559 0.46 151.21 ? C29 BX7 701 A 1 HETATM 58 C C29 BX7 . B . B 2 110.851 13.171 -27.613 0.54 151.15 ? C29 BX7 701 A 1 HETATM 59 C C30 BX7 . A . B 2 115.744 18.716 -30.218 0.46 136.16 ? C30 BX7 701 A 1 HETATM 60 C C30 BX7 . B . B 2 115.547 18.959 -30.259 0.54 135.48 ? C30 BX7 701 A 1 HETATM 61 C C31 BX7 . A . B 2 110.732 11.768 -28.234 0.46 152.19 ? C31 BX7 701 A 1 HETATM 62 C C31 BX7 . B . B 2 110.696 11.813 -28.286 0.54 152.02 ? C31 BX7 701 A 1 HETATM 63 C C32 BX7 . A . B 2 110.68 10.587 -27.617 0.46 156.84 ? C32 BX7 701 A 1 HETATM 64 C C32 BX7 . B . B 2 110.571 10.642 -27.662 0.54 156.95 ? C32 BX7 701 A 1 HETATM 65 C C33 BX7 . A . B 2 110.646 9.535 -28.465 0.46 163.28 ? C33 BX7 701 A 1 HETATM 66 C C33 BX7 . B . B 2 110.447 9.591 -28.503 0.54 163.61 ? C33 BX7 701 A 1 HETATM 67 C C34 BX7 . A . B 2 110.666 9.83 -29.775 0.46 165.97 ? C34 BX7 701 A 1 HETATM 68 C C34 BX7 . B . B 2 110.468 9.879 -29.815 0.54 166.06 ? C34 BX7 701 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 68 #