data_4IM6 # _model_server_result.job_id 2NZW3hUODCE08F7J11XZig _model_server_result.datetime_utc '2025-03-06 01:02:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4im6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 4IM6 # _exptl.entry_id 4IM6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4IM6 _cell.length_a 84.69 _cell.length_b 84.69 _cell.length_c 130.47 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -42.345 -73.343691 -21.745 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 109 A SER 893 1_555 A N CSO 110 A CSO 894 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C CSO 110 A CSO 894 1_555 A N LYS 111 A LYS 895 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.294 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 143 n n C1 C2 GOL sing 144 n n C1 H11 GOL sing 145 n n C1 H12 GOL sing 146 n n O1 HO1 GOL sing 147 n n C2 O2 GOL sing 148 n n C2 C3 GOL sing 149 n n C2 H2 GOL sing 150 n n O2 HO2 GOL sing 151 n n C3 O3 GOL sing 152 n n C3 H31 GOL sing 153 n n C3 H32 GOL sing 154 n n O3 HO3 GOL sing 155 n n # _atom_sites.entry_id 4IM6 _atom_sites.fract_transf_matrix[1][1] 0.011808 _atom_sites.fract_transf_matrix[1][2] 0.006817 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013634 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007665 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1001 1 GOL GOL . C 3 HOH A 1 1101 1 HOH HOH . C 3 HOH A 2 1102 2 HOH HOH . C 3 HOH A 3 1103 3 HOH HOH . C 3 HOH A 4 1104 4 HOH HOH . C 3 HOH A 5 1105 5 HOH HOH . C 3 HOH A 6 1106 6 HOH HOH . C 3 HOH A 7 1107 7 HOH HOH . C 3 HOH A 8 1108 8 HOH HOH . C 3 HOH A 9 1109 9 HOH HOH . C 3 HOH A 10 1110 10 HOH HOH . C 3 HOH A 11 1111 11 HOH HOH . C 3 HOH A 12 1112 12 HOH HOH . C 3 HOH A 13 1113 13 HOH HOH . C 3 HOH A 14 1114 14 HOH HOH . C 3 HOH A 15 1115 15 HOH HOH . C 3 HOH A 16 1116 16 HOH HOH . C 3 HOH A 17 1117 17 HOH HOH . C 3 HOH A 18 1118 18 HOH HOH . C 3 HOH A 19 1119 19 HOH HOH . C 3 HOH A 20 1120 20 HOH HOH . C 3 HOH A 21 1121 21 HOH HOH . C 3 HOH A 22 1122 22 HOH HOH . C 3 HOH A 23 1123 23 HOH HOH . C 3 HOH A 24 1124 24 HOH HOH . C 3 HOH A 25 1125 25 HOH HOH . C 3 HOH A 26 1126 26 HOH HOH . C 3 HOH A 27 1127 27 HOH HOH . C 3 HOH A 28 1128 28 HOH HOH . C 3 HOH A 29 1129 29 HOH HOH . C 3 HOH A 30 1130 30 HOH HOH . C 3 HOH A 31 1131 31 HOH HOH . C 3 HOH A 32 1132 32 HOH HOH . C 3 HOH A 33 1133 33 HOH HOH . C 3 HOH A 34 1134 34 HOH HOH . C 3 HOH A 35 1135 35 HOH HOH . C 3 HOH A 36 1136 36 HOH HOH . C 3 HOH A 37 1137 37 HOH HOH . C 3 HOH A 38 1138 38 HOH HOH . C 3 HOH A 39 1139 39 HOH HOH . C 3 HOH A 40 1140 40 HOH HOH . C 3 HOH A 41 1141 41 HOH HOH . C 3 HOH A 42 1142 42 HOH HOH . C 3 HOH A 43 1143 43 HOH HOH . C 3 HOH A 44 1144 44 HOH HOH . C 3 HOH A 45 1145 45 HOH HOH . C 3 HOH A 46 1146 46 HOH HOH . C 3 HOH A 47 1147 47 HOH HOH . C 3 HOH A 48 1148 48 HOH HOH . C 3 HOH A 49 1149 49 HOH HOH . C 3 HOH A 50 1150 50 HOH HOH . C 3 HOH A 51 1151 51 HOH HOH . C 3 HOH A 52 1152 52 HOH HOH . C 3 HOH A 53 1153 53 HOH HOH . C 3 HOH A 54 1154 54 HOH HOH . C 3 HOH A 55 1155 55 HOH HOH . C 3 HOH A 56 1156 56 HOH HOH . C 3 HOH A 57 1157 57 HOH HOH . C 3 HOH A 58 1158 58 HOH HOH . C 3 HOH A 59 1159 59 HOH HOH . C 3 HOH A 60 1160 60 HOH HOH . C 3 HOH A 61 1161 61 HOH HOH . C 3 HOH A 62 1162 62 HOH HOH . C 3 HOH A 63 1163 63 HOH HOH . C 3 HOH A 64 1164 64 HOH HOH . C 3 HOH A 65 1165 65 HOH HOH . C 3 HOH A 66 1166 66 HOH HOH . C 3 HOH A 67 1167 67 HOH HOH . C 3 HOH A 68 1168 68 HOH HOH . C 3 HOH A 69 1169 69 HOH HOH . C 3 HOH A 70 1170 70 HOH HOH . C 3 HOH A 71 1171 71 HOH HOH . C 3 HOH A 72 1172 72 HOH HOH . C 3 HOH A 73 1173 73 HOH HOH . C 3 HOH A 74 1174 74 HOH HOH . C 3 HOH A 75 1175 75 HOH HOH . C 3 HOH A 76 1176 76 HOH HOH . C 3 HOH A 77 1177 77 HOH HOH . C 3 HOH A 78 1178 78 HOH HOH . C 3 HOH A 79 1179 79 HOH HOH . C 3 HOH A 80 1180 80 HOH HOH . C 3 HOH A 81 1181 81 HOH HOH . C 3 HOH A 82 1182 82 HOH HOH . C 3 HOH A 83 1183 83 HOH HOH . C 3 HOH A 84 1184 84 HOH HOH . C 3 HOH A 85 1185 85 HOH HOH . C 3 HOH A 86 1186 86 HOH HOH . C 3 HOH A 87 1187 87 HOH HOH . C 3 HOH A 88 1188 88 HOH HOH . C 3 HOH A 89 1189 89 HOH HOH . C 3 HOH A 90 1190 90 HOH HOH . C 3 HOH A 91 1191 91 HOH HOH . C 3 HOH A 92 1192 92 HOH HOH . C 3 HOH A 93 1193 93 HOH HOH . C 3 HOH A 94 1194 94 HOH HOH . C 3 HOH A 95 1195 95 HOH HOH . C 3 HOH A 96 1196 96 HOH HOH . C 3 HOH A 97 1197 97 HOH HOH . C 3 HOH A 98 1198 98 HOH HOH . C 3 HOH A 99 1199 99 HOH HOH . C 3 HOH A 100 1200 100 HOH HOH . C 3 HOH A 101 1201 101 HOH HOH . C 3 HOH A 102 1202 102 HOH HOH . C 3 HOH A 103 1203 103 HOH HOH . C 3 HOH A 104 1204 104 HOH HOH . C 3 HOH A 105 1205 105 HOH HOH . C 3 HOH A 106 1206 106 HOH HOH . C 3 HOH A 107 1207 107 HOH HOH . C 3 HOH A 108 1208 108 HOH HOH . C 3 HOH A 109 1209 109 HOH HOH . C 3 HOH A 110 1210 110 HOH HOH . C 3 HOH A 111 1211 111 HOH HOH . C 3 HOH A 112 1212 112 HOH HOH . C 3 HOH A 113 1213 113 HOH HOH . C 3 HOH A 114 1214 114 HOH HOH . C 3 HOH A 115 1215 115 HOH HOH . C 3 HOH A 116 1216 116 HOH HOH . C 3 HOH A 117 1217 117 HOH HOH . C 3 HOH A 118 1218 118 HOH HOH . C 3 HOH A 119 1219 119 HOH HOH . C 3 HOH A 120 1220 121 HOH HOH . C 3 HOH A 121 1221 122 HOH HOH . C 3 HOH A 122 1222 123 HOH HOH . C 3 HOH A 123 1223 124 HOH HOH . C 3 HOH A 124 1224 125 HOH HOH . C 3 HOH A 125 1225 126 HOH HOH . C 3 HOH A 126 1226 127 HOH HOH . C 3 HOH A 127 1227 128 HOH HOH . C 3 HOH A 128 1228 130 HOH HOH . C 3 HOH A 129 1229 131 HOH HOH . C 3 HOH A 130 1230 132 HOH HOH . C 3 HOH A 131 1231 133 HOH HOH . C 3 HOH A 132 1232 134 HOH HOH . C 3 HOH A 133 1233 135 HOH HOH . C 3 HOH A 134 1234 136 HOH HOH . C 3 HOH A 135 1235 137 HOH HOH . C 3 HOH A 136 1236 138 HOH HOH . C 3 HOH A 137 1237 139 HOH HOH . C 3 HOH A 138 1238 140 HOH HOH . C 3 HOH A 139 1239 141 HOH HOH . C 3 HOH A 140 1240 142 HOH HOH . C 3 HOH A 141 1241 143 HOH HOH . C 3 HOH A 142 1242 144 HOH HOH . C 3 HOH A 143 1243 146 HOH HOH . C 3 HOH A 144 1244 147 HOH HOH . C 3 HOH A 145 1245 148 HOH HOH . C 3 HOH A 146 1246 149 HOH HOH . C 3 HOH A 147 1247 150 HOH HOH . C 3 HOH A 148 1248 151 HOH HOH . C 3 HOH A 149 1249 152 HOH HOH . C 3 HOH A 150 1250 153 HOH HOH . C 3 HOH A 151 1251 155 HOH HOH . C 3 HOH A 152 1252 156 HOH HOH . C 3 HOH A 153 1253 157 HOH HOH . C 3 HOH A 154 1254 158 HOH HOH . C 3 HOH A 155 1255 159 HOH HOH . C 3 HOH A 156 1256 160 HOH HOH . C 3 HOH A 157 1257 161 HOH HOH . C 3 HOH A 158 1258 162 HOH HOH . C 3 HOH A 159 1259 163 HOH HOH . C 3 HOH A 160 1260 164 HOH HOH . C 3 HOH A 161 1261 165 HOH HOH . C 3 HOH A 162 1262 166 HOH HOH . C 3 HOH A 163 1263 167 HOH HOH . C 3 HOH A 164 1264 168 HOH HOH . C 3 HOH A 165 1265 169 HOH HOH . C 3 HOH A 166 1266 170 HOH HOH . C 3 HOH A 167 1267 171 HOH HOH . C 3 HOH A 168 1268 172 HOH HOH . C 3 HOH A 169 1269 173 HOH HOH . C 3 HOH A 170 1270 174 HOH HOH . C 3 HOH A 171 1271 175 HOH HOH . C 3 HOH A 172 1272 176 HOH HOH . C 3 HOH A 173 1273 177 HOH HOH . C 3 HOH A 174 1274 178 HOH HOH . C 3 HOH A 175 1275 179 HOH HOH . C 3 HOH A 176 1276 180 HOH HOH . C 3 HOH A 177 1277 181 HOH HOH . C 3 HOH A 178 1278 182 HOH HOH . C 3 HOH A 179 1279 183 HOH HOH . C 3 HOH A 180 1280 184 HOH HOH . C 3 HOH A 181 1281 185 HOH HOH . C 3 HOH A 182 1282 186 HOH HOH . C 3 HOH A 183 1283 187 HOH HOH . C 3 HOH A 184 1284 188 HOH HOH . C 3 HOH A 185 1285 189 HOH HOH . C 3 HOH A 186 1286 190 HOH HOH . C 3 HOH A 187 1287 191 HOH HOH . C 3 HOH A 188 1288 192 HOH HOH . C 3 HOH A 189 1289 193 HOH HOH . C 3 HOH A 190 1290 194 HOH HOH . C 3 HOH A 191 1291 195 HOH HOH . C 3 HOH A 192 1292 196 HOH HOH . C 3 HOH A 193 1293 197 HOH HOH . C 3 HOH A 194 1294 198 HOH HOH . C 3 HOH A 195 1295 199 HOH HOH . C 3 HOH A 196 1296 200 HOH HOH . C 3 HOH A 197 1297 201 HOH HOH . C 3 HOH A 198 1298 202 HOH HOH . C 3 HOH A 199 1299 203 HOH HOH . C 3 HOH A 200 1300 204 HOH HOH . C 3 HOH A 201 1301 205 HOH HOH . C 3 HOH A 202 1302 206 HOH HOH . C 3 HOH A 203 1303 207 HOH HOH . C 3 HOH A 204 1304 208 HOH HOH . C 3 HOH A 205 1305 209 HOH HOH . C 3 HOH A 206 1306 210 HOH HOH . C 3 HOH A 207 1307 211 HOH HOH . C 3 HOH A 208 1308 212 HOH HOH . C 3 HOH A 209 1309 213 HOH HOH . C 3 HOH A 210 1310 214 HOH HOH . C 3 HOH A 211 1311 215 HOH HOH . C 3 HOH A 212 1312 216 HOH HOH . C 3 HOH A 213 1313 217 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -0.364 -39.679 -12.248 1 51.77 ? C1 GOL 1001 A 1 HETATM 2 O O1 GOL . . . B 2 -0.718 -38.372 -12.728 1 47.76 ? O1 GOL 1001 A 1 HETATM 3 C C2 GOL . . . B 2 1.151 -39.854 -12.238 1 43.15 ? C2 GOL 1001 A 1 HETATM 4 O O2 GOL . . . B 2 1.68 -38.92 -11.348 1 33.33 ? O2 GOL 1001 A 1 HETATM 5 C C3 GOL . . . B 2 1.52 -41.233 -11.663 1 39.56 ? C3 GOL 1001 A 1 HETATM 6 O O3 GOL . . . B 2 2.919 -41.246 -11.728 1 44.49 ? O3 GOL 1001 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #