data_4IMM # _model_server_result.job_id puGcYSQGBEzn3gfNvcQwIQ _model_server_result.datetime_utc '2025-02-11 10:04:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4imm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4IMM # _exptl.entry_id 4IMM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.11 _cell.angle_gamma 90 _cell.entry_id 4IMM _cell.length_a 65.3 _cell.length_b 78.62 _cell.length_c 70.99 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4IMM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,M 1 1 B,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLN 76 A GLN 76 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? metalc ? metalc2 A O ILE 92 A ILE 92 1_555 G NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc3 A OG SER 94 A SER 94 1_555 G NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc4 A O ILE 117 A ILE 117 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.076 ? metalc ? metalc5 A OG SER 153 A SER 153 1_555 F NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.06 ? metalc ? metalc6 A O ALA 155 A ALA 155 1_555 F NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.192 ? metalc ? metalc7 A O PRO 156 A PRO 156 1_555 F NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? metalc ? metalc8 A O ALA 157 A ALA 157 1_555 E NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc9 A O VAL 196 A VAL 196 1_555 I CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc10 A O ARG 197 A ARG 197 1_555 J MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc11 A O GLY 198 A GLY 198 1_555 I CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc12 A OD2 ASP 249 A ASP 249 1_555 I CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc13 A OD2 ASP 251 A ASP 251 1_555 I CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc14 A OD1 ASP 251 A ASP 251 1_555 I CA CA . A CA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc15 A OD2 ASP 251 A ASP 251 1_555 J MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc16 A O GLY 278 A GLY 278 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc17 A OG1 THR 280 A THR 280 1_555 H NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc18 A OG SER 288 A SER 288 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.102 ? metalc ? metalc19 A O LYS 290 A LYS 290 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.025 ? metalc ? metalc20 A O LYS 291 A LYS 291 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc21 A OE1 GLN 381 A GLN 381 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc22 E NA NA . A NA 403 1_555 M O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc23 I CA CA . A CA 407 1_555 M O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc24 I CA CA . A CA 407 1_555 M O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc25 B O VAL 196 B VAL 196 1_555 L CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc26 B O GLY 198 B GLY 198 1_555 L CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc27 B OD2 ASP 249 B ASP 249 1_555 L CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc28 B OD2 ASP 251 B ASP 251 1_555 L CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc29 B OD1 ASP 251 B ASP 251 1_555 L CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc30 L CA CA . B CA 402 1_555 N O HOH . B HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4IMM _atom_sites.fract_transf_matrix[1][1] 0.015314 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000564 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012719 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014096 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 401 1 NA NA . D 2 NA A 1 402 2 NA NA . E 2 NA A 1 403 3 NA NA . F 2 NA A 1 404 4 NA NA . G 2 NA A 1 405 5 NA NA . H 2 NA A 1 406 6 NA NA . I 3 CA A 1 407 3 CA CA . J 4 MG A 1 408 1 MG MG . K 3 CA B 1 401 1 CA CA . L 3 CA B 1 402 2 CA CA . M 5 HOH A 1 501 1 HOH HOH . M 5 HOH A 2 502 3 HOH HOH . M 5 HOH A 3 503 4 HOH HOH . M 5 HOH A 4 504 5 HOH HOH . M 5 HOH A 5 505 6 HOH HOH . M 5 HOH A 6 506 8 HOH HOH . M 5 HOH A 7 507 10 HOH HOH . M 5 HOH A 8 508 11 HOH HOH . M 5 HOH A 9 509 12 HOH HOH . M 5 HOH A 10 510 13 HOH HOH . M 5 HOH A 11 511 14 HOH HOH . M 5 HOH A 12 512 15 HOH HOH . M 5 HOH A 13 513 17 HOH HOH . M 5 HOH A 14 514 18 HOH HOH . M 5 HOH A 15 515 20 HOH HOH . M 5 HOH A 16 516 21 HOH HOH . M 5 HOH A 17 517 22 HOH HOH . M 5 HOH A 18 518 25 HOH HOH . M 5 HOH A 19 519 26 HOH HOH . M 5 HOH A 20 520 30 HOH HOH . M 5 HOH A 21 521 31 HOH HOH . M 5 HOH A 22 522 32 HOH HOH . M 5 HOH A 23 523 33 HOH HOH . M 5 HOH A 24 524 37 HOH HOH . M 5 HOH A 25 525 38 HOH HOH . M 5 HOH A 26 526 39 HOH HOH . M 5 HOH A 27 527 40 HOH HOH . M 5 HOH A 28 528 44 HOH HOH . M 5 HOH A 29 529 45 HOH HOH . M 5 HOH A 30 530 46 HOH HOH . M 5 HOH A 31 531 48 HOH HOH . M 5 HOH A 32 532 49 HOH HOH . M 5 HOH A 33 533 50 HOH HOH . M 5 HOH A 34 534 51 HOH HOH . M 5 HOH A 35 535 52 HOH HOH . M 5 HOH A 36 536 53 HOH HOH . M 5 HOH A 37 537 54 HOH HOH . M 5 HOH A 38 538 57 HOH HOH . M 5 HOH A 39 539 59 HOH HOH . M 5 HOH A 40 540 60 HOH HOH . M 5 HOH A 41 541 61 HOH HOH . M 5 HOH A 42 542 62 HOH HOH . M 5 HOH A 43 543 63 HOH HOH . M 5 HOH A 44 544 65 HOH HOH . M 5 HOH A 45 545 67 HOH HOH . M 5 HOH A 46 546 70 HOH HOH . M 5 HOH A 47 547 71 HOH HOH . M 5 HOH A 48 548 73 HOH HOH . M 5 HOH A 49 549 74 HOH HOH . M 5 HOH A 50 550 75 HOH HOH . M 5 HOH A 51 551 77 HOH HOH . M 5 HOH A 52 552 78 HOH HOH . M 5 HOH A 53 553 80 HOH HOH . M 5 HOH A 54 554 81 HOH HOH . M 5 HOH A 55 555 82 HOH HOH . M 5 HOH A 56 556 83 HOH HOH . M 5 HOH A 57 557 84 HOH HOH . M 5 HOH A 58 558 85 HOH HOH . M 5 HOH A 59 559 88 HOH HOH . M 5 HOH A 60 560 91 HOH HOH . M 5 HOH A 61 561 92 HOH HOH . N 5 HOH B 1 501 2 HOH HOH . N 5 HOH B 2 502 7 HOH HOH . N 5 HOH B 3 503 9 HOH HOH . N 5 HOH B 4 504 16 HOH HOH . N 5 HOH B 5 505 19 HOH HOH . N 5 HOH B 6 506 23 HOH HOH . N 5 HOH B 7 507 24 HOH HOH . N 5 HOH B 8 508 27 HOH HOH . N 5 HOH B 9 509 28 HOH HOH . N 5 HOH B 10 510 29 HOH HOH . N 5 HOH B 11 511 34 HOH HOH . N 5 HOH B 12 512 35 HOH HOH . N 5 HOH B 13 513 36 HOH HOH . N 5 HOH B 14 514 41 HOH HOH . N 5 HOH B 15 515 42 HOH HOH . N 5 HOH B 16 516 43 HOH HOH . N 5 HOH B 17 517 47 HOH HOH . N 5 HOH B 18 518 55 HOH HOH . N 5 HOH B 19 519 56 HOH HOH . N 5 HOH B 20 520 58 HOH HOH . N 5 HOH B 21 521 64 HOH HOH . N 5 HOH B 22 522 66 HOH HOH . N 5 HOH B 23 523 72 HOH HOH . N 5 HOH B 24 524 76 HOH HOH . N 5 HOH B 25 525 86 HOH HOH . N 5 HOH B 26 526 87 HOH HOH . N 5 HOH B 27 527 93 HOH HOH . N 5 HOH B 28 528 94 HOH HOH . N 5 HOH B 29 529 95 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 49.53 _atom_site.Cartn_y 33.393 _atom_site.Cartn_z -7.346 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #